Gcaud8573.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8573.t1
Unique NameGcaud8573.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length402
Homology
BLAST of Gcaud8573.t1 vs. uniprot
Match: A0A2V3IUN9_9FLOR (Mitochondrial inner membrane protein COX18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUN9_9FLOR)

HSP 1 Score: 508 bits (1307), Expect = 2.170e-177
Identity = 248/323 (76.78%), Postives = 284/323 (87.93%), Query Frame = 0
Query:   75 EFSKAAADNLQAFHEAIPIDCPWSLTIPLISLAIRGISLPLLYHNQLHRGRARIAAKEDPRIQHFVRNSPGTLVQKYYTYRRLRRIVLRSAYTSSWQQFNWHLTVHLPLIISASLGMRELSVRSDNGWSGTSLAWLTDLGAPDPTSALPLLTAGLWLWNLEPGAVPSQKLHPVQKLPITAGRFVLRSFQVLSVVSLSVTTQLPSGLVLFWACNALLTTGLRNALGSDVFRQRIGLLTESDLKEISVPPIMKATGQAFEEMRKELSTIQTELLSRFKGRAVDESLVQDVNRMLKRERMSGRMIADLKAVIRTDDQDGKKYLAIV 397
            +FS  AAD LQA HEA+P D PWS+TIPL SLAIRG+SLPLLYHN++HRGR RIAAKE PRIQHFVRN+PGTL+QKY+TYRRL R+ LRSA TSS + F WHL VHLPLIISASLGMRELS R+DNGWS TSL WL+DL APD T+ LPLLTAGLWLWNLEPGA PS KLHPVQKLPI AGRF+LRSFQVLSVVS+SVTTQLPSGLVLFWACNA+LTTGLR  L +D  R+RIGLLT +DLKEIS PP+M+ATG+AFE+MR+EL+T+Q ELL+RF G  VDESL  +VNRMLKRERMSGR+++DLKAV+RTD+ DGKKY+A+V
Sbjct:   53 QFSSTAADQLQALHEAVPFDLPWSVTIPLTSLAIRGLSLPLLYHNEVHRGRVRIAAKEQPRIQHFVRNTPGTLLQKYWTYRRLNRLTLRSAGTSSLRNFKWHLVVHLPLIISASLGMRELSSRADNGWSVTSLGWLSDLSAPDATAVLPLLTAGLWLWNLEPGATPSTKLHPVQKLPIHAGRFILRSFQVLSVVSVSVTTQLPSGLVLFWACNAMLTTGLRYILSNDGLRRRIGLLTAADLKEISAPPVMQATGKAFEQMRRELATVQRELLARFDGHRVDESLCDEVNRMLKRERMSGRIVSDLKAVVRTDETDGKKYVAVV 375          
BLAST of Gcaud8573.t1 vs. uniprot
Match: A0A067MBF3_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MBF3_9AGAM)

HSP 1 Score: 62.0 bits (149), Expect = 8.600e-7
Identity = 69/280 (24.64%), Postives = 114/280 (40.71%), Query Frame = 0
Query:   97 WSLTIPLISLAIRGISLPLLYHNQLHRGRARIAAKEDPRIQHFVRNSPGTLV---QKYYTYRRLRRIVLRSAYTSSWQQFNWHLTVHLPLIISASLGMRELSVRSDNGWSGTSLAWLTDLGAPDPTSALPLLTAGLWLWNLEPGAVPSQKLHPVQKLPITAGRFVLRSFQVLSVVSLSVTTQLPSGLVLFWACNALLTTGLRNALGSDVFRQRIGL----LTESDLKEISVPPIMKATGQAF-----------EEMRKELSTIQTELLSRFKGRAVDESL 358
            W+  I    L  R   LP+L+  Q++ GR    AK +P +Q  + N+        Q   T   L+   L     ++  +      V  PL +    G+R +            LAW TDL  PDP   LP+L+AG  L  +   AV ++ +             +L  F+V+++VS+ V   LPSGL++++ CN L+             R  IGL      E  LK  + P +       +           +  +KE++  + E L + +    ++SL
Sbjct:  190 WAGAILAAVLLTRAAVLPVLFKVQVNNGRL---AKINPELQLHMANAREAKEKGDQVAMTTAVLKAQTLLRENDANPARSMLGPLVQFPLALGFFFGIRGMCALPLESLKTGGLAWFTDLTIPDPYYVLPVLSAGAMLTMMR--AVSAETVQTEN------SAHMLNFFRVITLVSIPVIANLPSGLLVYFCCNGLVLLVQSQLTRLPAVRSYIGLQPLPTAEQVLKTQNDPKLNPGVYDTYVAGLEWYKGVKKNAKKEIARAEAEALEKARREREEKSL 458          
BLAST of Gcaud8573.t1 vs. uniprot
Match: A0A1E4U2X6_PACTA (Uncharacterized protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4U2X6_PACTA)

HSP 1 Score: 61.2 bits (147), Expect = 1.100e-6
Identity = 61/265 (23.02%), Postives = 122/265 (46.04%), Query Frame = 0
Query:   96 PWSLTIPLISLAIRGISLPLLYHN-QLHRGRARIAAKEDPRIQHFVRNSPGTLVQKYYTYRR--LRRIVLRSAYTSSWQQFNWHLTVHLPLIISASLGMRELSVRSDNGWSGTSLAWLTDLGAPDPTSALPLLTAGLWLWNLEPGA-VPSQKLHPVQKLPITAGRFVLRSFQVLSVVSLSVTTQLPSGLVLFWACNALLTTGLRNALGSDVFRQRIGLLTESDLKEISVPP------IMKATGQAFEEMRK--ELSTIQTELLSR 348
            PW  TI   ++A+R I  PL   +  +    ++   + DP ++  + ++     Q+    R+  L++  +++ Y +          + LPL +    G+R +++   +G++     W TDL APDP   L +++A +++ +++ G    + +  P  K  +T           L +VS+  T  L SG+VL++A NA+        L S+ FR+ +G+     + E+ + P      I+       E+ +K  E   ++TE L +
Sbjct:   89 PWWGTIIATTVAMRVILFPLYVKSADIVAKNSKAKPELDPIMKKVMASNDFAEKQRLALQRKHILKKYGIKNRYLAI-------PVLQLPLALGFFAGLRSMALVPVDGFTTQGAYWFTDLSAPDPYLGLQIISASVFIASMKLGGETGTAQFSPGIKKLMTY----------LPIVSIPATMYLSSGVVLYFAANAVCAVLQSALLRSEAFRKMVGI---EPIPEVVIDPSKANEGILDLAKNFIEDTKKKAEAKALETERLEK 333          
The following BLAST results are available for this feature:
BLAST of Gcaud8573.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IUN9_9FLOR2.170e-17776.78Mitochondrial inner membrane protein COX18 n=1 Tax... [more]
A0A067MBF3_9AGAM8.600e-724.64Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
A0A1E4U2X6_PACTA1.100e-623.02Uncharacterized protein n=1 Tax=Pachysolen tannoph... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001708Membrane insertase YidC/ALB3/OXA1/COX18PANTHERPTHR12428OXA1coord: 79..337
NoneNo IPR availablePANTHERPTHR12428:SF34MITOCHONDRIAL INNER MEMBRANE PROTEIN OXA1Lcoord: 79..337

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:46112..47506 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8573.t1Gcaud8573.t1Gracilaria caudata M_176_S67 malemRNANODE_15_length_84509_cov_4.337096 46112..47506 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8573.t1 ID=Gcaud8573.t1|Name=Gcaud8573.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=402bp
LPAEISIDLYAEHPDSRRNFCGQFAIVSWHIVHGNRSLWSLTDGLENWVA
MAEITCSLLLFPWASPRPMYPHVDEFSKAAADNLQAFHEAIPIDCPWSLT
IPLISLAIRGISLPLLYHNQLHRGRARIAAKEDPRIQHFVRNSPGTLVQK
YYTYRRLRRIVLRSAYTSSWQQFNWHLTVHLPLIISASLGMRELSVRSDN
GWSGTSLAWLTDLGAPDPTSALPLLTAGLWLWNLEPGAVPSQKLHPVQKL
PITAGRFVLRSFQVLSVVSLSVTTQLPSGLVLFWACNALLTTGLRNALGS
DVFRQRIGLLTESDLKEISVPPIMKATGQAFEEMRKELSTIQTELLSRFK
GRAVDESLVQDVNRMLKRERMSGRMIADLKAVIRTDDQDGKKYLAIVPSG
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001708YidC/ALB3/OXA1/COX18