Gcaud8573.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8573.t1
Unique Name	Gcaud8573.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	402

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_15_length_84509_cov_4.337096	contig	NODE_15_length_84509_cov_4.337096:46112..47506 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707293.1
Preferred name	OXA1
PFAMs	60KD_IMP
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00632
KEGG ko	ko:K01465,ko:K03217
KEGG TC	2.A.9
KEGG Reaction	R01993
KEGG Pathway	ko00240,ko01100,ko02024,ko03060,ko03070,map00240,map01100,map02024,map03060,map03070
KEGG Module	M00051,M00335
GOs	GO:0000002,GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008535,GO:0008565,GO:0009987,GO:0015031,GO:0015075,GO:0015267,GO:0015318,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017004,GO:0017038,GO:0019866,GO:0022607,GO:0022803,GO:0022838,GO:0022857,GO:0030061,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032977,GO:0032978,GO:0032979,GO:0033036,GO:0033108,GO:0033365,GO:0033615,GO:0033617,GO:0034220,GO:0034613,GO:0034622,GO:0042886,GO:0043021,GO:0043022,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045039,GO:0045184,GO:0046907,GO:0051179,GO:0051204,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0065003,GO:0070071,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0097002,GO:0097177,GO:1990542
Evalue	1.04e-25
EggNOG OGs	COG0706@1\|root,KOG1239@2759\|Eukaryota
EC	3.5.2.3
Description	membrane insertase activity
COG category	U
BRITE	ko00000,ko00001,ko00002,ko01000,ko02044,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8573	Gcaud8573	Gracilaria caudata M_176_S67 male	gene	NODE_15_length_84509_cov_4.337096 46112..47506 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8573.t1	Gcaud8573.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_15_length_84509_cov_4.337096 46112..47506 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8573.t1.stop1	Gcaud8573.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_15_length_84509_cov_4.337096 46112..46114 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8573.t1.CDS1	Gcaud8573.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 46112..47102 -
Gcaud8573.t1.CDS2	Gcaud8573.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 47215..47388 -
Gcaud8573.t1.CDS3	Gcaud8573.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 47466..47506 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8573.t1.exon1	Gcaud8573.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 46112..47102 -
Gcaud8573.t1.exon2	Gcaud8573.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 47215..47388 -
Gcaud8573.t1.exon3	Gcaud8573.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 47466..47506 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8573.t1.intron1	Gcaud8573.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_15_length_84509_cov_4.337096 47103..47214 -
Gcaud8573.t1.intron2	Gcaud8573.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_15_length_84509_cov_4.337096 47389..47465 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8573.t1.start1	Gcaud8573.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_15_length_84509_cov_4.337096 47504..47506 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_15_length_84509_cov_4.337096:46112..47506-
coding sequence from alignment at NODE_15_length_84509_cov_4.337096:46112..47506-

mRNA sequence

>Gcaud8573.t1 ID=Gcaud8573.t1|Name=Gcaud8573.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp
LPAEISIDLYAEHPDSRRNFCGQFAIVSWHIVHGNRSLWSLTDGLENWVA
MAEITCSLLLFPWASPRPMYPHVDEFSKAAADNLQAFHEAIPIDCPWSLT
IPLISLAIRGISLPLLYHNQLHRGRARIAAKEDPRIQHFVRNSPGTLVQK
YYTYRRLRRIVLRSAYTSSWQQFNWHLTVHLPLIISASLGMRELSVRSDN
GWSGTSLAWLTDLGAPDPTSALPLLTAGLWLWNLEPGAVPSQKLHPVQKL
PITAGRFVLRSFQVLSVVSLSVTTQLPSGLVLFWACNALLTTGLRNALGS
DVFRQRIGLLTESDLKEISVPPIMKATGQAFEEMRKELSTIQTELLSRFK
GRAVDESLVQDVNRMLKRERMSGRMIADLKAVIRTDDQDGKKYLAIVPSG
T*

spliced messenger RNA

>Gcaud8573.t1 ID=Gcaud8573.t1|Name=Gcaud8573.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:46112..47506- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCAGCGGAGATATCTATCGATCTTTATGCAGAGCATCCCGACTCAAG
AAGAAACTTTTGTGGACAATTCGCAATCGTGAGCTGGCACATTGTTCACG
GAAATCGTTCATTGTGGAGTCTTACCGATGGCCTTGAGAACTGGGTTGCT
ATGGCAGAAATCACTTGCTCCTTACTACTATTTCCGTGGGCTTCGCCAAG
GCCCATGTACCCACATGTAGACGAATTCTCTAAAGCTGCAGCTGACAATT
TACAAGCCTTTCACGAAGCGATTCCTATTGACTGTCCTTGGTCTCTGACT
ATTCCTTTGATATCACTAGCAATTCGTGGAATATCTCTTCCTCTGCTATA
CCACAATCAACTTCATCGAGGTCGTGCTAGAATTGCCGCCAAAGAGGATC
CTCGCATTCAGCACTTCGTACGGAACTCTCCCGGAACTCTGGTGCAGAAG
TATTACACTTATCGCCGTCTTCGCCGAATAGTGCTGCGATCTGCATATAC
ATCATCATGGCAGCAGTTCAACTGGCATCTCACAGTTCACCTACCTCTCA
TCATTTCTGCATCACTTGGAATGCGCGAGCTTTCAGTTCGTTCTGACAAC
GGGTGGAGTGGCACGTCTTTGGCATGGCTCACTGACTTGGGCGCCCCAGA
TCCAACCAGTGCCTTGCCGCTGCTTACGGCGGGATTGTGGTTGTGGAACT
TGGAGCCTGGGGCCGTTCCTTCTCAGAAACTTCATCCAGTGCAGAAGCTT
CCTATAACTGCTGGGAGATTTGTTTTGCGTTCGTTTCAAGTGCTTTCTGT
TGTCTCGCTGTCGGTCACGACACAACTTCCGTCAGGTCTTGTACTCTTTT
GGGCATGTAATGCGCTATTGACAACAGGTTTGCGTAACGCTTTAGGGAGT
GACGTGTTTAGACAAAGAATTGGTCTCTTAACAGAATCTGATCTGAAGGA
AATATCTGTACCGCCCATAATGAAAGCTACCGGGCAAGCTTTTGAAGAAA
TGAGAAAGGAATTGAGTACGATACAAACGGAGTTGTTGTCGAGATTCAAA
GGGCGTGCGGTTGACGAAAGTCTCGTGCAAGATGTCAATCGAATGCTAAA
GAGAGAACGGATGAGTGGGCGGATGATAGCTGACTTGAAGGCTGTTATCC
GAACAGATGATCAAGATGGAAAAAAGTATTTGGCCATAGTTCCTAGTGGC
ACCTAG

protein sequence of Gcaud8573.t1

>Gcaud8573.t1 ID=Gcaud8573.t1|Name=Gcaud8573.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=402bp
LPAEISIDLYAEHPDSRRNFCGQFAIVSWHIVHGNRSLWSLTDGLENWVA
MAEITCSLLLFPWASPRPMYPHVDEFSKAAADNLQAFHEAIPIDCPWSLT
IPLISLAIRGISLPLLYHNQLHRGRARIAAKEDPRIQHFVRNSPGTLVQK
YYTYRRLRRIVLRSAYTSSWQQFNWHLTVHLPLIISASLGMRELSVRSDN
GWSGTSLAWLTDLGAPDPTSALPLLTAGLWLWNLEPGAVPSQKLHPVQKL
PITAGRFVLRSFQVLSVVSLSVTTQLPSGLVLFWACNALLTTGLRNALGS
DVFRQRIGLLTESDLKEISVPPIMKATGQAFEEMRKELSTIQTELLSRFK
GRAVDESLVQDVNRMLKRERMSGRMIADLKAVIRTDDQDGKKYLAIVPSG
T*

mRNA from alignment at NODE_15_length_84509_cov_4.337096:46112..47506-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8573.t1 ID=Gcaud8573.t1|Name=Gcaud8573.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:46112..47506- (Gracilaria caudata M_176_S67 male)
CTGCCAGCGGAGATATCTATCGATCTTTATGCAGAGCATCCGTAAGTGTC
TCATTTTTGTTAACGACTTACTCCGGATTGGCGTTCCCTTCTAAATCGTA
TTCCATAACCCTTCCTAGCGACTCAAGAAGAAACTTTTGTGGACAATTCG
CAATCGTGAGCTGGCACATTGTTCACGGAAATCGTTCATTGTGGAGTCTT
ACCGATGGCCTTGAGAACTGGGTTGCTATGGCAGAAATCACTTGCTCCTT
ACTACTATTTCCGTGGGCTTCGCCAAGGCCCATGTACCCACAGTGCAAAG
TTACGAAGACTTTCGCTTCGGGATCTTTCTTATCCTTGCTCTAATCGCAA
TCTGTCGACATTGGCATCGACTTCTGCGCCAACATCGCCCTCAATTTTGT
CTAGTGTAGACGAATTCTCTAAAGCTGCAGCTGACAATTTACAAGCCTTT
CACGAAGCGATTCCTATTGACTGTCCTTGGTCTCTGACTATTCCTTTGAT
ATCACTAGCAATTCGTGGAATATCTCTTCCTCTGCTATACCACAATCAAC
TTCATCGAGGTCGTGCTAGAATTGCCGCCAAAGAGGATCCTCGCATTCAG
CACTTCGTACGGAACTCTCCCGGAACTCTGGTGCAGAAGTATTACACTTA
TCGCCGTCTTCGCCGAATAGTGCTGCGATCTGCATATACATCATCATGGC
AGCAGTTCAACTGGCATCTCACAGTTCACCTACCTCTCATCATTTCTGCA
TCACTTGGAATGCGCGAGCTTTCAGTTCGTTCTGACAACGGGTGGAGTGG
CACGTCTTTGGCATGGCTCACTGACTTGGGCGCCCCAGATCCAACCAGTG
CCTTGCCGCTGCTTACGGCGGGATTGTGGTTGTGGAACTTGGAGCCTGGG
GCCGTTCCTTCTCAGAAACTTCATCCAGTGCAGAAGCTTCCTATAACTGC
TGGGAGATTTGTTTTGCGTTCGTTTCAAGTGCTTTCTGTTGTCTCGCTGT
CGGTCACGACACAACTTCCGTCAGGTCTTGTACTCTTTTGGGCATGTAAT
GCGCTATTGACAACAGGTTTGCGTAACGCTTTAGGGAGTGACGTGTTTAG
ACAAAGAATTGGTCTCTTAACAGAATCTGATCTGAAGGAAATATCTGTAC
CGCCCATAATGAAAGCTACCGGGCAAGCTTTTGAAGAAATGAGAAAGGAA
TTGAGTACGATACAAACGGAGTTGTTGTCGAGATTCAAAGGGCGTGCGGT
TGACGAAAGTCTCGTGCAAGATGTCAATCGAATGCTAAAGAGAGAACGGA
TGAGTGGGCGGATGATAGCTGACTTGAAGGCTGTTATCCGAACAGATGAT
CAAGATGGAAAAAAGTATTTGGCCATAGTTCCTAGTGGCACCTAG

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:46112..47506-

>Gcaud8573.t1 ID=Gcaud8573.t1|Name=Gcaud8573.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1206bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:46112..47506- (Gracilaria caudata M_176_S67 male)
CTGCCAGCGGAGATATCTATCGATCTTTATGCAGAGCATCCCGACTCAAG
AAGAAACTTTTGTGGACAATTCGCAATCGTGAGCTGGCACATTGTTCACG
GAAATCGTTCATTGTGGAGTCTTACCGATGGCCTTGAGAACTGGGTTGCT
ATGGCAGAAATCACTTGCTCCTTACTACTATTTCCGTGGGCTTCGCCAAG
GCCCATGTACCCACATGTAGACGAATTCTCTAAAGCTGCAGCTGACAATT
TACAAGCCTTTCACGAAGCGATTCCTATTGACTGTCCTTGGTCTCTGACT
ATTCCTTTGATATCACTAGCAATTCGTGGAATATCTCTTCCTCTGCTATA
CCACAATCAACTTCATCGAGGTCGTGCTAGAATTGCCGCCAAAGAGGATC
CTCGCATTCAGCACTTCGTACGGAACTCTCCCGGAACTCTGGTGCAGAAG
TATTACACTTATCGCCGTCTTCGCCGAATAGTGCTGCGATCTGCATATAC
ATCATCATGGCAGCAGTTCAACTGGCATCTCACAGTTCACCTACCTCTCA
TCATTTCTGCATCACTTGGAATGCGCGAGCTTTCAGTTCGTTCTGACAAC
GGGTGGAGTGGCACGTCTTTGGCATGGCTCACTGACTTGGGCGCCCCAGA
TCCAACCAGTGCCTTGCCGCTGCTTACGGCGGGATTGTGGTTGTGGAACT
TGGAGCCTGGGGCCGTTCCTTCTCAGAAACTTCATCCAGTGCAGAAGCTT
CCTATAACTGCTGGGAGATTTGTTTTGCGTTCGTTTCAAGTGCTTTCTGT
TGTCTCGCTGTCGGTCACGACACAACTTCCGTCAGGTCTTGTACTCTTTT
GGGCATGTAATGCGCTATTGACAACAGGTTTGCGTAACGCTTTAGGGAGT
GACGTGTTTAGACAAAGAATTGGTCTCTTAACAGAATCTGATCTGAAGGA
AATATCTGTACCGCCCATAATGAAAGCTACCGGGCAAGCTTTTGAAGAAA
TGAGAAAGGAATTGAGTACGATACAAACGGAGTTGTTGTCGAGATTCAAA
GGGCGTGCGGTTGACGAAAGTCTCGTGCAAGATGTCAATCGAATGCTAAA
GAGAGAACGGATGAGTGGGCGGATGATAGCTGACTTGAAGGCTGTTATCC
GAACAGATGATCAAGATGGAAAAAAGTATTTGGCCATAGTTCCTAGTGGC
ACCTAG