Gcaud8558.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8558.t1
Unique Name	Gcaud8558.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_15_length_84509_cov_4.337096	contig	NODE_15_length_84509_cov_4.337096:9284..10588 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ07294
PFAMs	Ground-like,Hint,Kelch_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06224,ko:K11990,ko:K16669
KEGG Pathway	ko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG Module	M00678
GOs	GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue	3.19e-23
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota
Description	intein-mediated protein splicing
COG category	M
BRITE	ko00000,ko00001,ko00002,ko00536,ko01002,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8558	Gcaud8558	Gracilaria caudata M_176_S67 male	gene	NODE_15_length_84509_cov_4.337096 9284..10588 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8558.t1.stop1	Gcaud8558.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_15_length_84509_cov_4.337096 9284..9286 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8558.t1.CDS1	Gcaud8558.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 9284..10588 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8558.t1.exon1	Gcaud8558.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 9284..10588 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8558.t1.start1	Gcaud8558.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_15_length_84509_cov_4.337096 10586..10588 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8558.t1	Gcaud8558.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_15_length_84509_cov_4.337096 9284..10588 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_15_length_84509_cov_4.337096:9284..10588-
coding sequence from alignment at NODE_15_length_84509_cov_4.337096:9284..10588-

mRNA sequence

>Gcaud8558.t1 ID=Gcaud8558.t1|Name=Gcaud8558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp
MRFTAVCVAFATSFLAHAVMVPFSLRQTAPEDAIGTFNVGQFLGGGCPGR
ISHSETANEDGVIPHSVMSIGPNPCVDDGAMPIFTDPNEALELVQADTSR
ALISQFINAEVSAIYGVENSVRDCTRVMFPVGTLVIIFQPVNNVVIGLDQ
YFMNRRYMIVDDPEVEGICRYSAPRRVVEAPMPEESPEETEEEPAVVLPA
PTTLPEEPTETDEGTAPVPVPVPGSVGGPDATVLPVSDVDTEEESEEPSE
TPDDDPICFPADGSVQLEDGSVKRMDQIEIGDSVMVGKNVFSEVFMFSHR
LSNVKHTFVKMELENGQSLEATSGHYIYVNGVLSAASRVKVGDSLELMSG
DRAAVSQVSVVMKSGLFNPQTLHGDIVVNGVRASTFTQSVEICTATALMA
PLRFVYALFGWSGSFLDGGLDSVANMLPNGAAVL*

spliced messenger RNA

>Gcaud8558.t1 ID=Gcaud8558.t1|Name=Gcaud8558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:9284..10588- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCACCGCTGTTTGCGTGGCGTTCGCCACATCTTTCCTTGCCCA
CGCCGTTATGGTGCCATTTTCGCTTCGCCAAACCGCTCCGGAGGACGCCA
TCGGCACGTTTAACGTTGGCCAATTTCTCGGTGGAGGTTGCCCGGGTCGC
ATCTCTCACTCCGAGACCGCCAATGAAGATGGTGTGATTCCCCACAGCGT
CATGTCAATTGGCCCCAACCCTTGTGTTGATGACGGTGCCATGCCCATCT
TCACAGACCCTAACGAGGCTCTTGAACTCGTTCAGGCAGACACGTCTCGT
GCCCTCATTTCTCAGTTCATCAACGCTGAAGTTTCGGCGATCTATGGTGT
TGAGAATTCCGTGCGTGACTGTACCCGTGTCATGTTCCCGGTTGGCACCT
TGGTAATTATCTTTCAACCGGTCAATAATGTCGTCATCGGTTTGGATCAA
TACTTTATGAACCGCCGTTACATGATTGTTGACGATCCCGAAGTGGAAGG
AATTTGCCGCTACTCCGCACCCCGTCGTGTTGTGGAGGCTCCCATGCCAG
AAGAGTCTCCGGAAGAGACTGAAGAAGAACCAGCTGTTGTGCTTCCAGCA
CCGACCACACTGCCGGAAGAACCCACTGAAACTGATGAAGGTACTGCACC
AGTCCCCGTGCCGGTGCCCGGCAGCGTGGGTGGTCCCGATGCGACTGTTC
TCCCGGTGTCTGATGTTGATACCGAGGAGGAGTCAGAAGAACCCTCTGAG
ACTCCAGATGATGACCCGATTTGCTTCCCAGCCGACGGCAGCGTGCAGCT
GGAGGACGGCTCCGTCAAGCGTATGGATCAAATTGAGATCGGAGACTCCG
TGATGGTTGGAAAGAACGTGTTCTCAGAGGTGTTCATGTTCTCACACCGC
CTCTCTAATGTGAAGCACACCTTTGTGAAGATGGAGCTGGAGAACGGACA
AAGTCTCGAGGCAACTAGTGGACACTATATTTACGTGAACGGCGTTCTTT
CGGCCGCCTCTAGAGTGAAGGTGGGAGATTCACTCGAGCTTATGTCTGGA
GATCGTGCGGCTGTGTCGCAGGTGTCTGTGGTGATGAAGAGCGGTCTGTT
CAACCCTCAGACGCTTCATGGAGACATCGTTGTGAACGGAGTGAGAGCTA
GTACATTCACTCAGAGCGTGGAGATTTGCACAGCCACGGCATTGATGGCG
CCGCTGAGGTTTGTGTACGCGCTGTTTGGATGGAGCGGTAGCTTCTTGGA
CGGTGGTCTGGATAGCGTGGCCAACATGCTGCCGAACGGAGCTGCTGTGT
TGTAG

protein sequence of Gcaud8558.t1

>Gcaud8558.t1 ID=Gcaud8558.t1|Name=Gcaud8558.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=435bp
MRFTAVCVAFATSFLAHAVMVPFSLRQTAPEDAIGTFNVGQFLGGGCPGR
ISHSETANEDGVIPHSVMSIGPNPCVDDGAMPIFTDPNEALELVQADTSR
ALISQFINAEVSAIYGVENSVRDCTRVMFPVGTLVIIFQPVNNVVIGLDQ
YFMNRRYMIVDDPEVEGICRYSAPRRVVEAPMPEESPEETEEEPAVVLPA
PTTLPEEPTETDEGTAPVPVPVPGSVGGPDATVLPVSDVDTEEESEEPSE
TPDDDPICFPADGSVQLEDGSVKRMDQIEIGDSVMVGKNVFSEVFMFSHR
LSNVKHTFVKMELENGQSLEATSGHYIYVNGVLSAASRVKVGDSLELMSG
DRAAVSQVSVVMKSGLFNPQTLHGDIVVNGVRASTFTQSVEICTATALMA
PLRFVYALFGWSGSFLDGGLDSVANMLPNGAAVL*

mRNA from alignment at NODE_15_length_84509_cov_4.337096:9284..10588-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8558.t1 ID=Gcaud8558.t1|Name=Gcaud8558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:9284..10588- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCACCGCTGTTTGCGTGGCGTTCGCCACATCTTTCCTTGCCCA
CGCCGTTATGGTGCCATTTTCGCTTCGCCAAACCGCTCCGGAGGACGCCA
TCGGCACGTTTAACGTTGGCCAATTTCTCGGTGGAGGTTGCCCGGGTCGC
ATCTCTCACTCCGAGACCGCCAATGAAGATGGTGTGATTCCCCACAGCGT
CATGTCAATTGGCCCCAACCCTTGTGTTGATGACGGTGCCATGCCCATCT
TCACAGACCCTAACGAGGCTCTTGAACTCGTTCAGGCAGACACGTCTCGT
GCCCTCATTTCTCAGTTCATCAACGCTGAAGTTTCGGCGATCTATGGTGT
TGAGAATTCCGTGCGTGACTGTACCCGTGTCATGTTCCCGGTTGGCACCT
TGGTAATTATCTTTCAACCGGTCAATAATGTCGTCATCGGTTTGGATCAA
TACTTTATGAACCGCCGTTACATGATTGTTGACGATCCCGAAGTGGAAGG
AATTTGCCGCTACTCCGCACCCCGTCGTGTTGTGGAGGCTCCCATGCCAG
AAGAGTCTCCGGAAGAGACTGAAGAAGAACCAGCTGTTGTGCTTCCAGCA
CCGACCACACTGCCGGAAGAACCCACTGAAACTGATGAAGGTACTGCACC
AGTCCCCGTGCCGGTGCCCGGCAGCGTGGGTGGTCCCGATGCGACTGTTC
TCCCGGTGTCTGATGTTGATACCGAGGAGGAGTCAGAAGAACCCTCTGAG
ACTCCAGATGATGACCCGATTTGCTTCCCAGCCGACGGCAGCGTGCAGCT
GGAGGACGGCTCCGTCAAGCGTATGGATCAAATTGAGATCGGAGACTCCG
TGATGGTTGGAAAGAACGTGTTCTCAGAGGTGTTCATGTTCTCACACCGC
CTCTCTAATGTGAAGCACACCTTTGTGAAGATGGAGCTGGAGAACGGACA
AAGTCTCGAGGCAACTAGTGGACACTATATTTACGTGAACGGCGTTCTTT
CGGCCGCCTCTAGAGTGAAGGTGGGAGATTCACTCGAGCTTATGTCTGGA
GATCGTGCGGCTGTGTCGCAGGTGTCTGTGGTGATGAAGAGCGGTCTGTT
CAACCCTCAGACGCTTCATGGAGACATCGTTGTGAACGGAGTGAGAGCTA
GTACATTCACTCAGAGCGTGGAGATTTGCACAGCCACGGCATTGATGGCG
CCGCTGAGGTTTGTGTACGCGCTGTTTGGATGGAGCGGTAGCTTCTTGGA
CGGTGGTCTGGATAGCGTGGCCAACATGCTGCCGAACGGAGCTGCTGTGT
TGTAG

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:9284..10588-

>Gcaud8558.t1 ID=Gcaud8558.t1|Name=Gcaud8558.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1305bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:9284..10588- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCACCGCTGTTTGCGTGGCGTTCGCCACATCTTTCCTTGCCCA
CGCCGTTATGGTGCCATTTTCGCTTCGCCAAACCGCTCCGGAGGACGCCA
TCGGCACGTTTAACGTTGGCCAATTTCTCGGTGGAGGTTGCCCGGGTCGC
ATCTCTCACTCCGAGACCGCCAATGAAGATGGTGTGATTCCCCACAGCGT
CATGTCAATTGGCCCCAACCCTTGTGTTGATGACGGTGCCATGCCCATCT
TCACAGACCCTAACGAGGCTCTTGAACTCGTTCAGGCAGACACGTCTCGT
GCCCTCATTTCTCAGTTCATCAACGCTGAAGTTTCGGCGATCTATGGTGT
TGAGAATTCCGTGCGTGACTGTACCCGTGTCATGTTCCCGGTTGGCACCT
TGGTAATTATCTTTCAACCGGTCAATAATGTCGTCATCGGTTTGGATCAA
TACTTTATGAACCGCCGTTACATGATTGTTGACGATCCCGAAGTGGAAGG
AATTTGCCGCTACTCCGCACCCCGTCGTGTTGTGGAGGCTCCCATGCCAG
AAGAGTCTCCGGAAGAGACTGAAGAAGAACCAGCTGTTGTGCTTCCAGCA
CCGACCACACTGCCGGAAGAACCCACTGAAACTGATGAAGGTACTGCACC
AGTCCCCGTGCCGGTGCCCGGCAGCGTGGGTGGTCCCGATGCGACTGTTC
TCCCGGTGTCTGATGTTGATACCGAGGAGGAGTCAGAAGAACCCTCTGAG
ACTCCAGATGATGACCCGATTTGCTTCCCAGCCGACGGCAGCGTGCAGCT
GGAGGACGGCTCCGTCAAGCGTATGGATCAAATTGAGATCGGAGACTCCG
TGATGGTTGGAAAGAACGTGTTCTCAGAGGTGTTCATGTTCTCACACCGC
CTCTCTAATGTGAAGCACACCTTTGTGAAGATGGAGCTGGAGAACGGACA
AAGTCTCGAGGCAACTAGTGGACACTATATTTACGTGAACGGCGTTCTTT
CGGCCGCCTCTAGAGTGAAGGTGGGAGATTCACTCGAGCTTATGTCTGGA
GATCGTGCGGCTGTGTCGCAGGTGTCTGTGGTGATGAAGAGCGGTCTGTT
CAACCCTCAGACGCTTCATGGAGACATCGTTGTGAACGGAGTGAGAGCTA
GTACATTCACTCAGAGCGTGGAGATTTGCACAGCCACGGCATTGATGGCG
CCGCTGAGGTTTGTGTACGCGCTGTTTGGATGGAGCGGTAGCTTCTTGGA
CGGTGGTCTGGATAGCGTGGCCAACATGCTGCCGAACGGAGCTGCTGTGT
TGTAG