Gcaud8570.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8570.t1
Unique Name	Gcaud8570.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_15_length_84509_cov_4.337096	contig	NODE_15_length_84509_cov_4.337096:42384..43352 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707798.1
PFAMs	Peptidase_M24
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01265
Evalue	1.59e-136
EggNOG OGs	COG0024@1\|root,KOG2738@2759\|Eukaryota
EC	3.4.11.18
Description	metalloexopeptidase activity
COG category	E
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8570	Gcaud8570	Gracilaria caudata M_176_S67 male	gene	NODE_15_length_84509_cov_4.337096 42384..43352 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8570.t1.start1	Gcaud8570.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_15_length_84509_cov_4.337096 42384..42386 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8570.t1.CDS1	Gcaud8570.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 42384..43352 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8570.t1.exon1	Gcaud8570.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 42384..43352 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8570.t1.stop1	Gcaud8570.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_15_length_84509_cov_4.337096 43350..43352 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8570.t1	Gcaud8570.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_15_length_84509_cov_4.337096 42384..43352 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_15_length_84509_cov_4.337096:42384..43352+
coding sequence from alignment at NODE_15_length_84509_cov_4.337096:42384..43352+

mRNA sequence

>Gcaud8570.t1 ID=Gcaud8570.t1|Name=Gcaud8570.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=323bp
MKQQNQNKRAPRGFGLEQIPRFKFTGKLRPGMVLRRRSVPEGIRRPDYWK
DGKPKSKLPRFASDILSLTDAEIEKMRVSCRMAREILDIAGQMVKPGVLT
DEIDAVVHEETIKRGAYPSPLNYNNFPKSCCTSINEVVCHGIPDTTALVN
GDIINIDVTVYYDGYHGDCSETFLVGDVDKRGRELVQVTHECLEKAIEIC
KPGLPVKRIGGVIEEHAKRHGFTVVRNFCGHGVNSIFHTTPNVMHFRNND
PAGILKPGVTFTIEPMINEGTHRNVTWPDDWTTTTLDGKRSAQFEHTLLV
TDDGVERLTQKLASSPKYFWEQ*

spliced messenger RNA

>Gcaud8570.t1 ID=Gcaud8570.t1|Name=Gcaud8570.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:42384..43352+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAGCAGAACCAGAATAAGCGAGCCCCAAGAGGGTTCGGGTTAGA
GCAGATACCTCGGTTCAAGTTCACAGGGAAGCTACGTCCTGGGATGGTGC
TTAGACGTCGCTCCGTTCCTGAAGGAATACGTCGCCCAGACTATTGGAAG
GATGGAAAACCAAAATCTAAGCTACCTCGTTTCGCTTCAGATATACTGAG
CCTAACTGATGCGGAGATTGAGAAGATGCGCGTTTCTTGCCGTATGGCCC
GAGAAATCCTCGACATTGCGGGCCAGATGGTCAAACCAGGTGTGCTTACA
GACGAGATTGATGCCGTCGTGCACGAAGAGACGATAAAGCGTGGAGCATA
CCCATCCCCGCTCAACTACAATAACTTTCCAAAATCGTGTTGCACCTCCA
TAAATGAAGTGGTGTGTCATGGCATCCCGGATACCACGGCGCTGGTGAAC
GGTGATATTATAAACATCGATGTAACAGTGTATTACGATGGGTATCATGG
TGATTGCTCAGAAACATTTCTGGTTGGCGATGTTGACAAACGCGGCCGGG
AGCTTGTTCAAGTAACTCATGAATGCCTTGAGAAGGCTATCGAGATTTGC
AAACCAGGTTTACCGGTGAAAAGAATTGGTGGAGTTATTGAGGAACATGC
GAAACGTCACGGTTTCACTGTCGTGCGTAACTTCTGCGGGCATGGTGTCA
ACTCCATTTTCCACACCACACCAAATGTCATGCATTTCAGGAATAACGAC
CCAGCTGGTATTCTCAAGCCGGGTGTCACGTTCACTATCGAACCCATGAT
CAACGAGGGAACTCATCGGAATGTTACATGGCCCGACGACTGGACTACCA
CTACATTGGATGGAAAGCGAAGTGCTCAATTTGAGCACACTCTGCTTGTC
ACTGACGACGGGGTCGAACGATTGACTCAAAAACTGGCCTCCAGCCCGAA
GTACTTTTGGGAGCAATAG

protein sequence of Gcaud8570.t1

>Gcaud8570.t1 ID=Gcaud8570.t1|Name=Gcaud8570.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=323bp
MKQQNQNKRAPRGFGLEQIPRFKFTGKLRPGMVLRRRSVPEGIRRPDYWK
DGKPKSKLPRFASDILSLTDAEIEKMRVSCRMAREILDIAGQMVKPGVLT
DEIDAVVHEETIKRGAYPSPLNYNNFPKSCCTSINEVVCHGIPDTTALVN
GDIINIDVTVYYDGYHGDCSETFLVGDVDKRGRELVQVTHECLEKAIEIC
KPGLPVKRIGGVIEEHAKRHGFTVVRNFCGHGVNSIFHTTPNVMHFRNND
PAGILKPGVTFTIEPMINEGTHRNVTWPDDWTTTTLDGKRSAQFEHTLLV
TDDGVERLTQKLASSPKYFWEQ*

mRNA from alignment at NODE_15_length_84509_cov_4.337096:42384..43352+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8570.t1 ID=Gcaud8570.t1|Name=Gcaud8570.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:42384..43352+ (Gracilaria caudata M_176_S67 male)
ATGAAGCAGCAGAACCAGAATAAGCGAGCCCCAAGAGGGTTCGGGTTAGA
GCAGATACCTCGGTTCAAGTTCACAGGGAAGCTACGTCCTGGGATGGTGC
TTAGACGTCGCTCCGTTCCTGAAGGAATACGTCGCCCAGACTATTGGAAG
GATGGAAAACCAAAATCTAAGCTACCTCGTTTCGCTTCAGATATACTGAG
CCTAACTGATGCGGAGATTGAGAAGATGCGCGTTTCTTGCCGTATGGCCC
GAGAAATCCTCGACATTGCGGGCCAGATGGTCAAACCAGGTGTGCTTACA
GACGAGATTGATGCCGTCGTGCACGAAGAGACGATAAAGCGTGGAGCATA
CCCATCCCCGCTCAACTACAATAACTTTCCAAAATCGTGTTGCACCTCCA
TAAATGAAGTGGTGTGTCATGGCATCCCGGATACCACGGCGCTGGTGAAC
GGTGATATTATAAACATCGATGTAACAGTGTATTACGATGGGTATCATGG
TGATTGCTCAGAAACATTTCTGGTTGGCGATGTTGACAAACGCGGCCGGG
AGCTTGTTCAAGTAACTCATGAATGCCTTGAGAAGGCTATCGAGATTTGC
AAACCAGGTTTACCGGTGAAAAGAATTGGTGGAGTTATTGAGGAACATGC
GAAACGTCACGGTTTCACTGTCGTGCGTAACTTCTGCGGGCATGGTGTCA
ACTCCATTTTCCACACCACACCAAATGTCATGCATTTCAGGAATAACGAC
CCAGCTGGTATTCTCAAGCCGGGTGTCACGTTCACTATCGAACCCATGAT
CAACGAGGGAACTCATCGGAATGTTACATGGCCCGACGACTGGACTACCA
CTACATTGGATGGAAAGCGAAGTGCTCAATTTGAGCACACTCTGCTTGTC
ACTGACGACGGGGTCGAACGATTGACTCAAAAACTGGCCTCCAGCCCGAA
GTACTTTTGGGAGCAATAG

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:42384..43352+

>Gcaud8570.t1 ID=Gcaud8570.t1|Name=Gcaud8570.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=969bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:42384..43352+ (Gracilaria caudata M_176_S67 male)
ATGAAGCAGCAGAACCAGAATAAGCGAGCCCCAAGAGGGTTCGGGTTAGA
GCAGATACCTCGGTTCAAGTTCACAGGGAAGCTACGTCCTGGGATGGTGC
TTAGACGTCGCTCCGTTCCTGAAGGAATACGTCGCCCAGACTATTGGAAG
GATGGAAAACCAAAATCTAAGCTACCTCGTTTCGCTTCAGATATACTGAG
CCTAACTGATGCGGAGATTGAGAAGATGCGCGTTTCTTGCCGTATGGCCC
GAGAAATCCTCGACATTGCGGGCCAGATGGTCAAACCAGGTGTGCTTACA
GACGAGATTGATGCCGTCGTGCACGAAGAGACGATAAAGCGTGGAGCATA
CCCATCCCCGCTCAACTACAATAACTTTCCAAAATCGTGTTGCACCTCCA
TAAATGAAGTGGTGTGTCATGGCATCCCGGATACCACGGCGCTGGTGAAC
GGTGATATTATAAACATCGATGTAACAGTGTATTACGATGGGTATCATGG
TGATTGCTCAGAAACATTTCTGGTTGGCGATGTTGACAAACGCGGCCGGG
AGCTTGTTCAAGTAACTCATGAATGCCTTGAGAAGGCTATCGAGATTTGC
AAACCAGGTTTACCGGTGAAAAGAATTGGTGGAGTTATTGAGGAACATGC
GAAACGTCACGGTTTCACTGTCGTGCGTAACTTCTGCGGGCATGGTGTCA
ACTCCATTTTCCACACCACACCAAATGTCATGCATTTCAGGAATAACGAC
CCAGCTGGTATTCTCAAGCCGGGTGTCACGTTCACTATCGAACCCATGAT
CAACGAGGGAACTCATCGGAATGTTACATGGCCCGACGACTGGACTACCA
CTACATTGGATGGAAAGCGAAGTGCTCAATTTGAGCACACTCTGCTTGTC
ACTGACGACGGGGTCGAACGATTGACTCAAAAACTGGCCTCCAGCCCGAA
GTACTTTTGGGAGCAATAG