Gcaud8568.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8568.t1
Unique Name	Gcaud8568.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	228

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_15_length_84509_cov_4.337096	contig	NODE_15_length_84509_cov_4.337096:32414..33097 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	132113.XP_003490937.1
Preferred name	SPON1
PFAMs	Kunitz_BPTI,Reeler,Spond_N,TSP_1
Max annot lvl	33208\|Metazoa
GOs	GO:0000902,GO:0000904,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006928,GO:0006935,GO:0007155,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007413,GO:0007517,GO:0008037,GO:0008038,GO:0008045,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0012505,GO:0016043,GO:0016203,GO:0022008,GO:0022610,GO:0030016,GO:0030017,GO:0030030,GO:0030154,GO:0030182,GO:0031012,GO:0031175,GO:0031430,GO:0031672,GO:0031974,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033563,GO:0033627,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0055120,GO:0060538,GO:0061061,GO:0061564,GO:0062023,GO:0070013,GO:0071840,GO:0097485,GO:0099080,GO:0099081,GO:0099512,GO:0106030,GO:0120036,GO:0120039
Evalue	1.44e-18
EggNOG OGs	KOG3539@1\|root,KOG3539@2759\|Eukaryota,38FW7@33154\|Opisthokonta,3BEQ3@33208\|Metazoa,3CYKJ@33213\|Bilateria,41TS9@6656\|Arthropoda,3SKHS@50557\|Insecta,46EUV@7399\|Hymenoptera
Description	Spondin_N
COG category	W

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8568	Gcaud8568	Gracilaria caudata M_176_S67 male	gene	NODE_15_length_84509_cov_4.337096 32414..33097 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8568.t1.start1	Gcaud8568.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_15_length_84509_cov_4.337096 32414..32416 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8568.t1.CDS1	Gcaud8568.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 32414..33097 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8568.t1.exon1	Gcaud8568.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 32414..33097 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8568.t1.stop1	Gcaud8568.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_15_length_84509_cov_4.337096 33095..33097 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8568.t1	Gcaud8568.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_15_length_84509_cov_4.337096 32414..33097 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_15_length_84509_cov_4.337096:32414..33097+
coding sequence from alignment at NODE_15_length_84509_cov_4.337096:32414..33097+

mRNA sequence

>Gcaud8568.t1 ID=Gcaud8568.t1|Name=Gcaud8568.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp
MLSNVIKALLTLALIETVFATGAKASCKKAEYKITFRNMLTPAEFGDKIP
EGGLVFSPITGASHSNRISLLTVRGYASPQVEQIAETGDNGRLVKFAEHL
RDAKKGVKTVVAATGPTLSGNRTTLRFMVDCNHPFVTFVGMIAPSPDWLV
LVANRNLYEKGRFVPSVWGKLIAYDAGTDDGGDFTNPTDASLDKPSEPQK
NIAPLVEDDTDAFDGRPVGTYFIKRIR*

spliced messenger RNA

>Gcaud8568.t1 ID=Gcaud8568.t1|Name=Gcaud8568.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:32414..33097+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCGAACGTTATCAAAGCTCTACTGACCCTGGCTCTCATCGAAAC
GGTTTTTGCAACCGGAGCGAAGGCCTCATGCAAGAAAGCGGAGTACAAAA
TTACGTTCCGCAATATGTTAACTCCAGCTGAGTTCGGTGATAAAATCCCT
GAGGGTGGTCTCGTTTTCTCCCCCATAACCGGCGCCTCCCACTCGAATCG
CATTTCACTTCTCACAGTACGCGGATACGCCTCTCCTCAAGTAGAACAAA
TTGCTGAAACTGGCGATAATGGTCGTCTGGTCAAGTTTGCGGAACATCTT
CGAGACGCCAAGAAGGGAGTGAAGACCGTCGTTGCAGCCACTGGCCCTAC
TCTGTCGGGAAACCGTACGACTTTGCGCTTCATGGTTGACTGCAATCATC
CGTTTGTCACGTTTGTTGGAATGATCGCCCCGTCTCCGGACTGGTTGGTG
CTTGTCGCCAACAGAAACTTGTATGAGAAGGGACGTTTCGTCCCTTCTGT
TTGGGGTAAGCTTATTGCTTATGACGCCGGCACTGATGATGGAGGAGATT
TCACCAACCCTACAGATGCTAGTCTTGATAAGCCTTCCGAACCACAGAAA
AACATTGCTCCTTTGGTTGAGGACGACACAGACGCATTCGATGGTCGACC
TGTGGGTACCTACTTCATCAAAAGAATTCGATGA

protein sequence of Gcaud8568.t1

>Gcaud8568.t1 ID=Gcaud8568.t1|Name=Gcaud8568.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
MLSNVIKALLTLALIETVFATGAKASCKKAEYKITFRNMLTPAEFGDKIP
EGGLVFSPITGASHSNRISLLTVRGYASPQVEQIAETGDNGRLVKFAEHL
RDAKKGVKTVVAATGPTLSGNRTTLRFMVDCNHPFVTFVGMIAPSPDWLV
LVANRNLYEKGRFVPSVWGKLIAYDAGTDDGGDFTNPTDASLDKPSEPQK
NIAPLVEDDTDAFDGRPVGTYFIKRIR*

mRNA from alignment at NODE_15_length_84509_cov_4.337096:32414..33097+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8568.t1 ID=Gcaud8568.t1|Name=Gcaud8568.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:32414..33097+ (Gracilaria caudata M_176_S67 male)
ATGCTCTCGAACGTTATCAAAGCTCTACTGACCCTGGCTCTCATCGAAAC
GGTTTTTGCAACCGGAGCGAAGGCCTCATGCAAGAAAGCGGAGTACAAAA
TTACGTTCCGCAATATGTTAACTCCAGCTGAGTTCGGTGATAAAATCCCT
GAGGGTGGTCTCGTTTTCTCCCCCATAACCGGCGCCTCCCACTCGAATCG
CATTTCACTTCTCACAGTACGCGGATACGCCTCTCCTCAAGTAGAACAAA
TTGCTGAAACTGGCGATAATGGTCGTCTGGTCAAGTTTGCGGAACATCTT
CGAGACGCCAAGAAGGGAGTGAAGACCGTCGTTGCAGCCACTGGCCCTAC
TCTGTCGGGAAACCGTACGACTTTGCGCTTCATGGTTGACTGCAATCATC
CGTTTGTCACGTTTGTTGGAATGATCGCCCCGTCTCCGGACTGGTTGGTG
CTTGTCGCCAACAGAAACTTGTATGAGAAGGGACGTTTCGTCCCTTCTGT
TTGGGGTAAGCTTATTGCTTATGACGCCGGCACTGATGATGGAGGAGATT
TCACCAACCCTACAGATGCTAGTCTTGATAAGCCTTCCGAACCACAGAAA
AACATTGCTCCTTTGGTTGAGGACGACACAGACGCATTCGATGGTCGACC
TGTGGGTACCTACTTCATCAAAAGAATTCGATGA

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:32414..33097+

>Gcaud8568.t1 ID=Gcaud8568.t1|Name=Gcaud8568.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=684bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:32414..33097+ (Gracilaria caudata M_176_S67 male)
ATGCTCTCGAACGTTATCAAAGCTCTACTGACCCTGGCTCTCATCGAAAC
GGTTTTTGCAACCGGAGCGAAGGCCTCATGCAAGAAAGCGGAGTACAAAA
TTACGTTCCGCAATATGTTAACTCCAGCTGAGTTCGGTGATAAAATCCCT
GAGGGTGGTCTCGTTTTCTCCCCCATAACCGGCGCCTCCCACTCGAATCG
CATTTCACTTCTCACAGTACGCGGATACGCCTCTCCTCAAGTAGAACAAA
TTGCTGAAACTGGCGATAATGGTCGTCTGGTCAAGTTTGCGGAACATCTT
CGAGACGCCAAGAAGGGAGTGAAGACCGTCGTTGCAGCCACTGGCCCTAC
TCTGTCGGGAAACCGTACGACTTTGCGCTTCATGGTTGACTGCAATCATC
CGTTTGTCACGTTTGTTGGAATGATCGCCCCGTCTCCGGACTGGTTGGTG
CTTGTCGCCAACAGAAACTTGTATGAGAAGGGACGTTTCGTCCCTTCTGT
TTGGGGTAAGCTTATTGCTTATGACGCCGGCACTGATGATGGAGGAGATT
TCACCAACCCTACAGATGCTAGTCTTGATAAGCCTTCCGAACCACAGAAA
AACATTGCTCCTTTGGTTGAGGACGACACAGACGCATTCGATGGTCGACC
TGTGGGTACCTACTTCATCAAAAGAATTCGATGA