Gcaud8375.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8375.t1
Unique Name	Gcaud8375.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1596_length_9578_cov_4.940550	contig	NODE_1596_length_9578_cov_4.940550:4393..5451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8375	Gcaud8375	Gracilaria caudata M_176_S67 male	gene	NODE_1596_length_9578_cov_4.940550 4393..5451 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8375.t1.start1	Gcaud8375.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1596_length_9578_cov_4.940550 4393..4395 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8375.t1.CDS1	Gcaud8375.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1596_length_9578_cov_4.940550 4393..5451 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8375.t1.exon1	Gcaud8375.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1596_length_9578_cov_4.940550 4393..5451 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8375.t1.stop1	Gcaud8375.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1596_length_9578_cov_4.940550 5449..5451 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8375.t1	Gcaud8375.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1596_length_9578_cov_4.940550 4393..5451 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1596_length_9578_cov_4.940550:4393..5451+
coding sequence from alignment at NODE_1596_length_9578_cov_4.940550:4393..5451+

mRNA sequence

>Gcaud8375.t1 ID=Gcaud8375.t1|Name=Gcaud8375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=353bp
MFSGAMEDQMRRGCPLPKYSVNPEADHLTPVQSAVIRLAIAVSKRKNTAS
KDHLLPLCQNLSRLFDNGGSKNPSHDVEVIKSIFCFVGALNTFMDVMGVQ
LEPRASAFASARTSELRMHFEPGIHASAADVEGSQSDHVLVKRSYVGGML
DNFIDMVRLIPDLIAMMALEREIYREIPASNQALDEWMKLHFNGNAPQFM
TNIHRLGFKQAVCLGLHENVLRGSGNSGKGYRSEMKWTRKERCGLMYVYG
TAVECQEMRILAEWSYPDSNTSDFESLINSQECEMKWSSGFVAAKTVVVE
HLVKAENVSTETIQWITKELSAKEVVEVGSLISFLCFLHRVIMLFNDAEM
CK*

spliced messenger RNA

>Gcaud8375.t1 ID=Gcaud8375.t1|Name=Gcaud8375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_1596_length_9578_cov_4.940550:4393..5451+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTAGTGGTGCAATGGAAGATCAGATGCGCAGGGGGTGTCCACTCCC
CAAGTATTCAGTCAACCCGGAAGCAGACCATCTCACGCCGGTACAGTCAG
CAGTCATCCGCCTTGCAATCGCTGTTTCTAAACGTAAGAACACAGCTTCA
AAGGATCATCTTTTGCCTCTGTGTCAAAATCTTTCCCGTTTGTTTGACAA
TGGTGGTAGCAAAAATCCCAGCCATGATGTTGAAGTCATCAAGTCCATTT
TTTGTTTCGTTGGCGCCCTCAACACATTCATGGATGTCATGGGCGTGCAG
CTGGAACCGAGAGCGAGTGCTTTTGCCAGTGCACGCACTTCTGAGTTGAG
AATGCACTTCGAGCCGGGAATACACGCATCTGCTGCAGATGTTGAGGGCA
GCCAAAGTGATCATGTGTTAGTGAAACGATCTTATGTTGGTGGTATGCTG
GACAACTTTATAGATATGGTACGACTGATTCCAGACTTGATCGCAATGAT
GGCACTCGAGCGAGAGATTTACAGAGAAATCCCAGCAAGCAACCAAGCTC
TGGATGAATGGATGAAGCTTCATTTTAATGGAAATGCGCCCCAGTTTATG
ACAAACATCCATCGATTGGGATTCAAGCAAGCTGTTTGTCTTGGACTACA
TGAAAATGTGCTTCGAGGAAGTGGGAACAGTGGAAAAGGTTACAGAAGTG
AAATGAAATGGACAAGGAAAGAACGATGTGGACTGATGTATGTGTACGGA
ACTGCGGTGGAATGTCAGGAAATGCGTATATTGGCGGAGTGGTCCTACCC
AGATAGCAATACGAGTGACTTTGAATCACTTATCAACAGCCAAGAATGTG
AAATGAAATGGTCATCCGGCTTCGTGGCAGCAAAGACGGTTGTAGTAGAA
CATCTTGTGAAGGCGGAGAACGTATCGACAGAAACGATTCAATGGATAAC
GAAAGAACTTTCTGCGAAAGAGGTTGTAGAGGTTGGTTCATTGATCAGCT
TTCTGTGTTTTCTGCATCGCGTCATAATGCTGTTCAATGATGCAGAAATG
TGCAAATGA

protein sequence of Gcaud8375.t1

>Gcaud8375.t1 ID=Gcaud8375.t1|Name=Gcaud8375.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=353bp
MFSGAMEDQMRRGCPLPKYSVNPEADHLTPVQSAVIRLAIAVSKRKNTAS
KDHLLPLCQNLSRLFDNGGSKNPSHDVEVIKSIFCFVGALNTFMDVMGVQ
LEPRASAFASARTSELRMHFEPGIHASAADVEGSQSDHVLVKRSYVGGML
DNFIDMVRLIPDLIAMMALEREIYREIPASNQALDEWMKLHFNGNAPQFM
TNIHRLGFKQAVCLGLHENVLRGSGNSGKGYRSEMKWTRKERCGLMYVYG
TAVECQEMRILAEWSYPDSNTSDFESLINSQECEMKWSSGFVAAKTVVVE
HLVKAENVSTETIQWITKELSAKEVVEVGSLISFLCFLHRVIMLFNDAEM
CK*

mRNA from alignment at NODE_1596_length_9578_cov_4.940550:4393..5451+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8375.t1 ID=Gcaud8375.t1|Name=Gcaud8375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_1596_length_9578_cov_4.940550:4393..5451+ (Gracilaria caudata M_176_S67 male)
ATGTTTAGTGGTGCAATGGAAGATCAGATGCGCAGGGGGTGTCCACTCCC
CAAGTATTCAGTCAACCCGGAAGCAGACCATCTCACGCCGGTACAGTCAG
CAGTCATCCGCCTTGCAATCGCTGTTTCTAAACGTAAGAACACAGCTTCA
AAGGATCATCTTTTGCCTCTGTGTCAAAATCTTTCCCGTTTGTTTGACAA
TGGTGGTAGCAAAAATCCCAGCCATGATGTTGAAGTCATCAAGTCCATTT
TTTGTTTCGTTGGCGCCCTCAACACATTCATGGATGTCATGGGCGTGCAG
CTGGAACCGAGAGCGAGTGCTTTTGCCAGTGCACGCACTTCTGAGTTGAG
AATGCACTTCGAGCCGGGAATACACGCATCTGCTGCAGATGTTGAGGGCA
GCCAAAGTGATCATGTGTTAGTGAAACGATCTTATGTTGGTGGTATGCTG
GACAACTTTATAGATATGGTACGACTGATTCCAGACTTGATCGCAATGAT
GGCACTCGAGCGAGAGATTTACAGAGAAATCCCAGCAAGCAACCAAGCTC
TGGATGAATGGATGAAGCTTCATTTTAATGGAAATGCGCCCCAGTTTATG
ACAAACATCCATCGATTGGGATTCAAGCAAGCTGTTTGTCTTGGACTACA
TGAAAATGTGCTTCGAGGAAGTGGGAACAGTGGAAAAGGTTACAGAAGTG
AAATGAAATGGACAAGGAAAGAACGATGTGGACTGATGTATGTGTACGGA
ACTGCGGTGGAATGTCAGGAAATGCGTATATTGGCGGAGTGGTCCTACCC
AGATAGCAATACGAGTGACTTTGAATCACTTATCAACAGCCAAGAATGTG
AAATGAAATGGTCATCCGGCTTCGTGGCAGCAAAGACGGTTGTAGTAGAA
CATCTTGTGAAGGCGGAGAACGTATCGACAGAAACGATTCAATGGATAAC
GAAAGAACTTTCTGCGAAAGAGGTTGTAGAGGTTGGTTCATTGATCAGCT
TTCTGTGTTTTCTGCATCGCGTCATAATGCTGTTCAATGATGCAGAAATG
TGCAAATGA

Coding sequence (CDS) from alignment at NODE_1596_length_9578_cov_4.940550:4393..5451+

>Gcaud8375.t1 ID=Gcaud8375.t1|Name=Gcaud8375.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1059bp|location=Sequence derived from alignment at NODE_1596_length_9578_cov_4.940550:4393..5451+ (Gracilaria caudata M_176_S67 male)
ATGTTTAGTGGTGCAATGGAAGATCAGATGCGCAGGGGGTGTCCACTCCC
CAAGTATTCAGTCAACCCGGAAGCAGACCATCTCACGCCGGTACAGTCAG
CAGTCATCCGCCTTGCAATCGCTGTTTCTAAACGTAAGAACACAGCTTCA
AAGGATCATCTTTTGCCTCTGTGTCAAAATCTTTCCCGTTTGTTTGACAA
TGGTGGTAGCAAAAATCCCAGCCATGATGTTGAAGTCATCAAGTCCATTT
TTTGTTTCGTTGGCGCCCTCAACACATTCATGGATGTCATGGGCGTGCAG
CTGGAACCGAGAGCGAGTGCTTTTGCCAGTGCACGCACTTCTGAGTTGAG
AATGCACTTCGAGCCGGGAATACACGCATCTGCTGCAGATGTTGAGGGCA
GCCAAAGTGATCATGTGTTAGTGAAACGATCTTATGTTGGTGGTATGCTG
GACAACTTTATAGATATGGTACGACTGATTCCAGACTTGATCGCAATGAT
GGCACTCGAGCGAGAGATTTACAGAGAAATCCCAGCAAGCAACCAAGCTC
TGGATGAATGGATGAAGCTTCATTTTAATGGAAATGCGCCCCAGTTTATG
ACAAACATCCATCGATTGGGATTCAAGCAAGCTGTTTGTCTTGGACTACA
TGAAAATGTGCTTCGAGGAAGTGGGAACAGTGGAAAAGGTTACAGAAGTG
AAATGAAATGGACAAGGAAAGAACGATGTGGACTGATGTATGTGTACGGA
ACTGCGGTGGAATGTCAGGAAATGCGTATATTGGCGGAGTGGTCCTACCC
AGATAGCAATACGAGTGACTTTGAATCACTTATCAACAGCCAAGAATGTG
AAATGAAATGGTCATCCGGCTTCGTGGCAGCAAAGACGGTTGTAGTAGAA
CATCTTGTGAAGGCGGAGAACGTATCGACAGAAACGATTCAATGGATAAC
GAAAGAACTTTCTGCGAAAGAGGTTGTAGAGGTTGGTTCATTGATCAGCT
TTCTGTGTTTTCTGCATCGCGTCATAATGCTGTTCAATGATGCAGAAATG
TGCAAATGA