Gcaud8371.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8371.t1
Unique Name	Gcaud8371.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	577

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1588_length_9614_cov_3.697994	contig	NODE_1588_length_9614_cov_3.697994:175..1905 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8371	Gcaud8371	Gracilaria caudata M_176_S67 male	gene	NODE_1588_length_9614_cov_3.697994 175..1905 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8371.t1.start1	Gcaud8371.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1588_length_9614_cov_3.697994 175..177 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8371.t1.CDS1	Gcaud8371.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1588_length_9614_cov_3.697994 175..1905 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8371.t1.exon1	Gcaud8371.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1588_length_9614_cov_3.697994 175..1905 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8371.t1.stop1	Gcaud8371.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1588_length_9614_cov_3.697994 1903..1905 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8371.t1	Gcaud8371.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1588_length_9614_cov_3.697994 175..1905 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1588_length_9614_cov_3.697994:175..1905+
coding sequence from alignment at NODE_1588_length_9614_cov_3.697994:175..1905+

mRNA sequence

>Gcaud8371.t1 ID=Gcaud8371.t1|Name=Gcaud8371.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=577bp
LPALDLLHHLSQLAAPAAPDELNDLIRHIAANRALLQNVVAAALSPPVHC
VDAPRERLPRAWVLSVLLRHGPAPLRDALADEPSLIVAFADVFRAPPTKL
DAALAAHAADVLRALLQQFPKQTASALHRTQLVARLVQHVSLQPAADLLP
RFVGTRIFTSGFSPVLPMHKRAIVMMASARVHHLLLARFEHAVQVLLAQK
QGSREYAAASVEGVCNAMAAISMRAMCIPRKHEDSDERTDVQYSVGLGLI
SASVYNDAKDYLNLLRSVQPLRQLLQLALRADARQLPEVLFPTMTLLCSL
LRAIRKKNKSLFPSMRKAVAEVDTSRIAGVLCDTVRTFEHMLHADNALIV
GRARLAVVDLLREACCTINEHSLCALLRAHDYALVRRLLALTRAFSRNEM
VLTRVAQAFGAVLSRAPQLGDELLQRIPELFELLLRARSCAPLWTLLRSF
VCSASFERAMRRSEHHDGARHDALLELEELYDEHVRAAEETGLQKVSELK
QSKLRGDTEIDVDALYGQSEDYGQEVYIRALLQEVSGANDSTPPSDNVVQ
HAAEAVHHAAEAFTERFNRALLQHHE*

spliced messenger RNA

>Gcaud8371.t1 ID=Gcaud8371.t1|Name=Gcaud8371.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:175..1905+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCCGCGCTCGACCTACTGCACCATCTGTCGCAGCTCGCCGCGCCGGC
GGCGCCCGACGAGCTGAACGATTTGATCCGCCACATCGCCGCCAACCGCG
CGCTGCTGCAAAACGTGGTGGCCGCCGCACTATCGCCGCCCGTGCACTGC
GTGGACGCGCCGCGCGAGCGGCTGCCGCGCGCGTGGGTGCTGTCCGTGTT
GCTGCGTCACGGGCCGGCGCCGCTGCGCGACGCGCTGGCCGATGAGCCGT
CGCTCATCGTGGCGTTTGCAGACGTGTTTCGCGCGCCGCCCACCAAACTG
GACGCCGCGCTCGCCGCGCACGCCGCCGACGTGCTGCGCGCGCTGCTGCA
GCAGTTTCCCAAGCAAACGGCGTCCGCGCTGCACCGCACGCAGCTGGTGG
CGCGGCTGGTGCAGCACGTGAGTCTGCAGCCCGCCGCCGACCTACTGCCG
CGCTTTGTGGGCACGCGCATCTTCACGTCGGGCTTCTCGCCCGTGCTGCC
CATGCACAAGCGCGCCATTGTGATGATGGCGTCCGCGCGCGTGCACCATC
TTTTGTTGGCGCGCTTCGAGCACGCGGTGCAAGTGCTGCTGGCGCAGAAG
CAGGGCAGCCGCGAGTACGCGGCCGCGAGCGTGGAGGGCGTGTGCAACGC
CATGGCGGCCATTTCGATGCGCGCCATGTGCATTCCCAGAAAACACGAGG
ACTCGGACGAGCGCACCGACGTGCAGTACTCGGTGGGTCTGGGCCTCATC
TCGGCGTCGGTGTACAACGACGCCAAGGACTACCTCAACCTGCTGCGCTC
GGTGCAGCCGCTGCGGCAGCTGTTGCAGCTGGCGCTGCGCGCGGACGCGC
GACAGCTGCCGGAGGTGCTGTTCCCCACCATGACGCTGCTGTGCTCGCTG
CTGCGCGCCATCCGCAAGAAGAACAAGTCGCTGTTCCCGTCCATGCGCAA
GGCGGTGGCGGAGGTGGATACGTCGCGCATCGCCGGCGTACTGTGCGATA
CAGTACGCACATTTGAGCACATGCTCCACGCTGACAACGCGCTCATTGTT
GGCCGCGCGCGGCTGGCTGTTGTTGATCTGTTGCGCGAAGCGTGCTGCAC
CATCAACGAGCACTCGCTCTGCGCGCTGCTGCGCGCGCACGACTACGCGC
TGGTGCGGCGGCTGCTGGCGCTCACGCGCGCGTTCAGCCGCAACGAAATG
GTGCTCACGCGCGTGGCGCAGGCGTTTGGCGCGGTGCTGTCGCGCGCGCC
ACAGCTGGGCGACGAGCTGCTGCAACGCATCCCGGAGCTGTTCGAGCTGC
TGCTGCGCGCGCGCAGCTGTGCGCCGTTGTGGACGCTGCTGCGCAGTTTT
GTGTGCTCGGCGAGCTTTGAGCGCGCGATGCGACGCAGCGAGCACCACGA
CGGCGCGCGACACGACGCGCTGCTGGAGCTGGAGGAGTTGTACGACGAGC
ACGTGCGCGCGGCGGAGGAGACGGGGCTGCAAAAAGTGTCGGAGCTCAAG
CAGAGCAAGCTGCGCGGCGACACGGAGATCGATGTGGACGCGCTGTACGG
GCAGAGCGAGGACTACGGGCAGGAGGTGTACATCCGCGCGCTGCTGCAGG
AGGTGTCGGGCGCCAACGACAGCACGCCGCCGTCGGACAACGTTGTACAA
CACGCGGCGGAGGCGGTGCACCACGCGGCGGAGGCGTTCACGGAGCGCTT
CAACCGCGCGCTGCTGCAGCACCACGAGTGA

protein sequence of Gcaud8371.t1

>Gcaud8371.t1 ID=Gcaud8371.t1|Name=Gcaud8371.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=577bp
LPALDLLHHLSQLAAPAAPDELNDLIRHIAANRALLQNVVAAALSPPVHC
VDAPRERLPRAWVLSVLLRHGPAPLRDALADEPSLIVAFADVFRAPPTKL
DAALAAHAADVLRALLQQFPKQTASALHRTQLVARLVQHVSLQPAADLLP
RFVGTRIFTSGFSPVLPMHKRAIVMMASARVHHLLLARFEHAVQVLLAQK
QGSREYAAASVEGVCNAMAAISMRAMCIPRKHEDSDERTDVQYSVGLGLI
SASVYNDAKDYLNLLRSVQPLRQLLQLALRADARQLPEVLFPTMTLLCSL
LRAIRKKNKSLFPSMRKAVAEVDTSRIAGVLCDTVRTFEHMLHADNALIV
GRARLAVVDLLREACCTINEHSLCALLRAHDYALVRRLLALTRAFSRNEM
VLTRVAQAFGAVLSRAPQLGDELLQRIPELFELLLRARSCAPLWTLLRSF
VCSASFERAMRRSEHHDGARHDALLELEELYDEHVRAAEETGLQKVSELK
QSKLRGDTEIDVDALYGQSEDYGQEVYIRALLQEVSGANDSTPPSDNVVQ
HAAEAVHHAAEAFTERFNRALLQHHE*

mRNA from alignment at NODE_1588_length_9614_cov_3.697994:175..1905+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8371.t1 ID=Gcaud8371.t1|Name=Gcaud8371.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:175..1905+ (Gracilaria caudata M_176_S67 male)
CTGCCCGCGCTCGACCTACTGCACCATCTGTCGCAGCTCGCCGCGCCGGC
GGCGCCCGACGAGCTGAACGATTTGATCCGCCACATCGCCGCCAACCGCG
CGCTGCTGCAAAACGTGGTGGCCGCCGCACTATCGCCGCCCGTGCACTGC
GTGGACGCGCCGCGCGAGCGGCTGCCGCGCGCGTGGGTGCTGTCCGTGTT
GCTGCGTCACGGGCCGGCGCCGCTGCGCGACGCGCTGGCCGATGAGCCGT
CGCTCATCGTGGCGTTTGCAGACGTGTTTCGCGCGCCGCCCACCAAACTG
GACGCCGCGCTCGCCGCGCACGCCGCCGACGTGCTGCGCGCGCTGCTGCA
GCAGTTTCCCAAGCAAACGGCGTCCGCGCTGCACCGCACGCAGCTGGTGG
CGCGGCTGGTGCAGCACGTGAGTCTGCAGCCCGCCGCCGACCTACTGCCG
CGCTTTGTGGGCACGCGCATCTTCACGTCGGGCTTCTCGCCCGTGCTGCC
CATGCACAAGCGCGCCATTGTGATGATGGCGTCCGCGCGCGTGCACCATC
TTTTGTTGGCGCGCTTCGAGCACGCGGTGCAAGTGCTGCTGGCGCAGAAG
CAGGGCAGCCGCGAGTACGCGGCCGCGAGCGTGGAGGGCGTGTGCAACGC
CATGGCGGCCATTTCGATGCGCGCCATGTGCATTCCCAGAAAACACGAGG
ACTCGGACGAGCGCACCGACGTGCAGTACTCGGTGGGTCTGGGCCTCATC
TCGGCGTCGGTGTACAACGACGCCAAGGACTACCTCAACCTGCTGCGCTC
GGTGCAGCCGCTGCGGCAGCTGTTGCAGCTGGCGCTGCGCGCGGACGCGC
GACAGCTGCCGGAGGTGCTGTTCCCCACCATGACGCTGCTGTGCTCGCTG
CTGCGCGCCATCCGCAAGAAGAACAAGTCGCTGTTCCCGTCCATGCGCAA
GGCGGTGGCGGAGGTGGATACGTCGCGCATCGCCGGCGTACTGTGCGATA
CAGTACGCACATTTGAGCACATGCTCCACGCTGACAACGCGCTCATTGTT
GGCCGCGCGCGGCTGGCTGTTGTTGATCTGTTGCGCGAAGCGTGCTGCAC
CATCAACGAGCACTCGCTCTGCGCGCTGCTGCGCGCGCACGACTACGCGC
TGGTGCGGCGGCTGCTGGCGCTCACGCGCGCGTTCAGCCGCAACGAAATG
GTGCTCACGCGCGTGGCGCAGGCGTTTGGCGCGGTGCTGTCGCGCGCGCC
ACAGCTGGGCGACGAGCTGCTGCAACGCATCCCGGAGCTGTTCGAGCTGC
TGCTGCGCGCGCGCAGCTGTGCGCCGTTGTGGACGCTGCTGCGCAGTTTT
GTGTGCTCGGCGAGCTTTGAGCGCGCGATGCGACGCAGCGAGCACCACGA
CGGCGCGCGACACGACGCGCTGCTGGAGCTGGAGGAGTTGTACGACGAGC
ACGTGCGCGCGGCGGAGGAGACGGGGCTGCAAAAAGTGTCGGAGCTCAAG
CAGAGCAAGCTGCGCGGCGACACGGAGATCGATGTGGACGCGCTGTACGG
GCAGAGCGAGGACTACGGGCAGGAGGTGTACATCCGCGCGCTGCTGCAGG
AGGTGTCGGGCGCCAACGACAGCACGCCGCCGTCGGACAACGTTGTACAA
CACGCGGCGGAGGCGGTGCACCACGCGGCGGAGGCGTTCACGGAGCGCTT
CAACCGCGCGCTGCTGCAGCACCACGAGTGA

Coding sequence (CDS) from alignment at NODE_1588_length_9614_cov_3.697994:175..1905+

>Gcaud8371.t1 ID=Gcaud8371.t1|Name=Gcaud8371.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1731bp|location=Sequence derived from alignment at NODE_1588_length_9614_cov_3.697994:175..1905+ (Gracilaria caudata M_176_S67 male)
CTGCCCGCGCTCGACCTACTGCACCATCTGTCGCAGCTCGCCGCGCCGGC
GGCGCCCGACGAGCTGAACGATTTGATCCGCCACATCGCCGCCAACCGCG
CGCTGCTGCAAAACGTGGTGGCCGCCGCACTATCGCCGCCCGTGCACTGC
GTGGACGCGCCGCGCGAGCGGCTGCCGCGCGCGTGGGTGCTGTCCGTGTT
GCTGCGTCACGGGCCGGCGCCGCTGCGCGACGCGCTGGCCGATGAGCCGT
CGCTCATCGTGGCGTTTGCAGACGTGTTTCGCGCGCCGCCCACCAAACTG
GACGCCGCGCTCGCCGCGCACGCCGCCGACGTGCTGCGCGCGCTGCTGCA
GCAGTTTCCCAAGCAAACGGCGTCCGCGCTGCACCGCACGCAGCTGGTGG
CGCGGCTGGTGCAGCACGTGAGTCTGCAGCCCGCCGCCGACCTACTGCCG
CGCTTTGTGGGCACGCGCATCTTCACGTCGGGCTTCTCGCCCGTGCTGCC
CATGCACAAGCGCGCCATTGTGATGATGGCGTCCGCGCGCGTGCACCATC
TTTTGTTGGCGCGCTTCGAGCACGCGGTGCAAGTGCTGCTGGCGCAGAAG
CAGGGCAGCCGCGAGTACGCGGCCGCGAGCGTGGAGGGCGTGTGCAACGC
CATGGCGGCCATTTCGATGCGCGCCATGTGCATTCCCAGAAAACACGAGG
ACTCGGACGAGCGCACCGACGTGCAGTACTCGGTGGGTCTGGGCCTCATC
TCGGCGTCGGTGTACAACGACGCCAAGGACTACCTCAACCTGCTGCGCTC
GGTGCAGCCGCTGCGGCAGCTGTTGCAGCTGGCGCTGCGCGCGGACGCGC
GACAGCTGCCGGAGGTGCTGTTCCCCACCATGACGCTGCTGTGCTCGCTG
CTGCGCGCCATCCGCAAGAAGAACAAGTCGCTGTTCCCGTCCATGCGCAA
GGCGGTGGCGGAGGTGGATACGTCGCGCATCGCCGGCGTACTGTGCGATA
CAGTACGCACATTTGAGCACATGCTCCACGCTGACAACGCGCTCATTGTT
GGCCGCGCGCGGCTGGCTGTTGTTGATCTGTTGCGCGAAGCGTGCTGCAC
CATCAACGAGCACTCGCTCTGCGCGCTGCTGCGCGCGCACGACTACGCGC
TGGTGCGGCGGCTGCTGGCGCTCACGCGCGCGTTCAGCCGCAACGAAATG
GTGCTCACGCGCGTGGCGCAGGCGTTTGGCGCGGTGCTGTCGCGCGCGCC
ACAGCTGGGCGACGAGCTGCTGCAACGCATCCCGGAGCTGTTCGAGCTGC
TGCTGCGCGCGCGCAGCTGTGCGCCGTTGTGGACGCTGCTGCGCAGTTTT
GTGTGCTCGGCGAGCTTTGAGCGCGCGATGCGACGCAGCGAGCACCACGA
CGGCGCGCGACACGACGCGCTGCTGGAGCTGGAGGAGTTGTACGACGAGC
ACGTGCGCGCGGCGGAGGAGACGGGGCTGCAAAAAGTGTCGGAGCTCAAG
CAGAGCAAGCTGCGCGGCGACACGGAGATCGATGTGGACGCGCTGTACGG
GCAGAGCGAGGACTACGGGCAGGAGGTGTACATCCGCGCGCTGCTGCAGG
AGGTGTCGGGCGCCAACGACAGCACGCCGCCGTCGGACAACGTTGTACAA
CACGCGGCGGAGGCGGTGCACCACGCGGCGGAGGCGTTCACGGAGCGCTT
CAACCGCGCGCTGCTGCAGCACCACGAGTGA