Gcaud3737.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3737.t1
Unique Name	Gcaud3737.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1567_length_9710_cov_4.702256	contig	NODE_1567_length_9710_cov_4.702256:3991..5649 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	452471.Aasi_0451
Preferred name	ylqF
PFAMs	MMR_HSR1
Max annot lvl	2\|Bacteria
KEGG ko	ko:K14540
GOs	GO:0003674,GO:0003824,GO:0003924,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022613,GO:0042254,GO:0044085,GO:0071840
Evalue	4.33e-18
EggNOG OGs	COG1161@1\|root,COG1161@2\|Bacteria
Description	GTP binding
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3737	Gcaud3737	Gracilaria caudata M_176_S67 male	gene	NODE_1567_length_9710_cov_4.702256 3991..5649 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3737.t1.stop1	Gcaud3737.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1567_length_9710_cov_4.702256 3991..3993 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3737.t1.CDS1	Gcaud3737.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1567_length_9710_cov_4.702256 3991..5649 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3737.t1.exon1	Gcaud3737.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1567_length_9710_cov_4.702256 3991..5649 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3737.t1.start1	Gcaud3737.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1567_length_9710_cov_4.702256 5647..5649 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3737.t1	Gcaud3737.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1567_length_9710_cov_4.702256 3991..5649 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1567_length_9710_cov_4.702256:3991..5649-
coding sequence from alignment at NODE_1567_length_9710_cov_4.702256:3991..5649-

mRNA sequence

>Gcaud3737.t1 ID=Gcaud3737.t1|Name=Gcaud3737.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=553bp
MEGGDSERPRSNNLHNKMSSGKGADISSGRKSDEYGEWVSQGTAHMASTH
QNASEMYPECTSDTWGKCKNNPDETNDPYLYVDIAEGAILLPNEEHKASH
EHRDHPERTTRREHWTPQEHWTPPQHHAPQQYRTTQELRNGQEHRTVQEL
CAPEELQTPHELQTPQERRTLQGHQTSQGHRAPHSMAYQAHFYPQHVPEH
PMKFTRYPSGRDPSPVSKHPVTIPSPLETDEKKAQTSSRGEVANKVSNRF
TGEPIAGVNQPIRVIVLGNPGVGKSTIQNSLMGEALFKSGISLGGGLTKR
IGICERERWAFVDTPGLDDIYHRNTAAQELSKAFRGPCAAKIVFITALEA
GRVRAADVCTLMTIVAALRKAGVELSDRYALIVNKCEPSLAENLASVQNH
ELRAKVLDPFVMVEKVSQVRIVGLESSLRGKSGVLLNDEESAKLRELVEH
TPTIYLPAKPEVNLDVGTFEQATQMIEEGLNQHSNDAQSGARQSRIRTAE
NERREKTHSQKKQKRGLGGIISSLLDALFGTPHDSAAPKRCQGGFGDPHV
LE*

spliced messenger RNA

>Gcaud3737.t1 ID=Gcaud3737.t1|Name=Gcaud3737.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at NODE_1567_length_9710_cov_4.702256:3991..5649- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGTGGAGACAGCGAAAGACCGAGAAGCAACAATTTACACAATAA
GATGTCGTCGGGGAAAGGTGCCGACATAAGCTCTGGTCGAAAATCTGATG
AATATGGCGAGTGGGTATCGCAAGGTACAGCACACATGGCTTCGACGCAT
CAAAATGCTTCCGAGATGTATCCTGAATGTACAAGTGATACTTGGGGAAA
ATGTAAGAACAACCCAGACGAAACAAACGATCCTTACCTTTACGTCGATA
TCGCCGAGGGCGCCATACTTCTCCCCAATGAAGAACACAAGGCTTCACAT
GAACACCGGGATCATCCGGAACGTACGACGAGAAGAGAACATTGGACTCC
GCAAGAACACTGGACTCCACCACAACACCATGCTCCACAACAATACCGAA
CTACGCAAGAACTAAGGAATGGGCAAGAACATCGGACTGTGCAAGAACTA
TGTGCTCCAGAAGAACTACAGACTCCGCACGAACTGCAGACTCCGCAAGA
ACGAAGGACTCTGCAGGGACATCAGACGTCCCAAGGACACCGAGCTCCAC
ACAGTATGGCCTATCAGGCACATTTCTACCCCCAACACGTTCCTGAGCAT
CCTATGAAGTTTACAAGATATCCAAGTGGGCGAGACCCTTCCCCAGTTTC
GAAGCATCCTGTCACGATACCTTCGCCACTTGAGACAGACGAAAAGAAAG
CGCAAACTTCGTCACGCGGTGAGGTTGCAAACAAGGTGTCCAATCGCTTT
ACGGGTGAACCAATTGCAGGAGTCAATCAACCCATCAGAGTGATCGTCTT
GGGCAATCCAGGAGTGGGTAAGTCAACAATCCAAAACAGTCTAATGGGAG
AAGCATTGTTCAAATCCGGTATCTCTTTGGGAGGGGGTCTCACGAAGCGC
ATAGGAATTTGTGAAAGAGAAAGGTGGGCGTTTGTGGACACACCTGGTTT
GGATGATATATATCATAGAAACACGGCGGCGCAAGAATTATCAAAAGCTT
TCCGTGGACCTTGTGCTGCTAAAATCGTGTTCATCACGGCTTTGGAAGCG
GGTCGTGTGCGTGCGGCAGATGTGTGTACGCTGATGACCATTGTGGCAGC
GTTGAGGAAAGCAGGAGTTGAACTGAGTGATAGATATGCGCTGATTGTGA
ACAAATGTGAACCTTCATTGGCCGAGAACCTCGCTAGTGTGCAAAATCAT
GAACTTCGGGCAAAAGTTTTGGATCCGTTTGTCATGGTAGAGAAAGTGAG
CCAAGTAAGAATTGTTGGGCTTGAATCAAGTTTACGTGGAAAGAGTGGGG
TTTTGCTCAATGACGAAGAAAGCGCCAAGCTACGAGAGTTGGTGGAGCAT
ACGCCAACGATTTATCTGCCTGCAAAGCCAGAAGTGAATTTGGATGTGGG
GACTTTCGAACAGGCCACTCAAATGATTGAAGAGGGATTGAATCAACATT
CGAACGATGCTCAATCAGGTGCGAGACAGAGTAGAATCAGAACAGCGGAA
AATGAACGCAGAGAGAAAACCCATTCGCAGAAAAAGCAAAAGAGAGGGCT
AGGCGGAATTATTTCGTCTCTCCTCGATGCGTTGTTTGGGACCCCACATG
ATTCGGCTGCGCCGAAACGATGTCAAGGCGGCTTTGGAGATCCCCATGTG
CTAGAATGA

protein sequence of Gcaud3737.t1

>Gcaud3737.t1 ID=Gcaud3737.t1|Name=Gcaud3737.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=553bp
MEGGDSERPRSNNLHNKMSSGKGADISSGRKSDEYGEWVSQGTAHMASTH
QNASEMYPECTSDTWGKCKNNPDETNDPYLYVDIAEGAILLPNEEHKASH
EHRDHPERTTRREHWTPQEHWTPPQHHAPQQYRTTQELRNGQEHRTVQEL
CAPEELQTPHELQTPQERRTLQGHQTSQGHRAPHSMAYQAHFYPQHVPEH
PMKFTRYPSGRDPSPVSKHPVTIPSPLETDEKKAQTSSRGEVANKVSNRF
TGEPIAGVNQPIRVIVLGNPGVGKSTIQNSLMGEALFKSGISLGGGLTKR
IGICERERWAFVDTPGLDDIYHRNTAAQELSKAFRGPCAAKIVFITALEA
GRVRAADVCTLMTIVAALRKAGVELSDRYALIVNKCEPSLAENLASVQNH
ELRAKVLDPFVMVEKVSQVRIVGLESSLRGKSGVLLNDEESAKLRELVEH
TPTIYLPAKPEVNLDVGTFEQATQMIEEGLNQHSNDAQSGARQSRIRTAE
NERREKTHSQKKQKRGLGGIISSLLDALFGTPHDSAAPKRCQGGFGDPHV
LE*

mRNA from alignment at NODE_1567_length_9710_cov_4.702256:3991..5649-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3737.t1 ID=Gcaud3737.t1|Name=Gcaud3737.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at NODE_1567_length_9710_cov_4.702256:3991..5649- (Gracilaria caudata M_176_S67 male)
ATGGAAGGTGGAGACAGCGAAAGACCGAGAAGCAACAATTTACACAATAA
GATGTCGTCGGGGAAAGGTGCCGACATAAGCTCTGGTCGAAAATCTGATG
AATATGGCGAGTGGGTATCGCAAGGTACAGCACACATGGCTTCGACGCAT
CAAAATGCTTCCGAGATGTATCCTGAATGTACAAGTGATACTTGGGGAAA
ATGTAAGAACAACCCAGACGAAACAAACGATCCTTACCTTTACGTCGATA
TCGCCGAGGGCGCCATACTTCTCCCCAATGAAGAACACAAGGCTTCACAT
GAACACCGGGATCATCCGGAACGTACGACGAGAAGAGAACATTGGACTCC
GCAAGAACACTGGACTCCACCACAACACCATGCTCCACAACAATACCGAA
CTACGCAAGAACTAAGGAATGGGCAAGAACATCGGACTGTGCAAGAACTA
TGTGCTCCAGAAGAACTACAGACTCCGCACGAACTGCAGACTCCGCAAGA
ACGAAGGACTCTGCAGGGACATCAGACGTCCCAAGGACACCGAGCTCCAC
ACAGTATGGCCTATCAGGCACATTTCTACCCCCAACACGTTCCTGAGCAT
CCTATGAAGTTTACAAGATATCCAAGTGGGCGAGACCCTTCCCCAGTTTC
GAAGCATCCTGTCACGATACCTTCGCCACTTGAGACAGACGAAAAGAAAG
CGCAAACTTCGTCACGCGGTGAGGTTGCAAACAAGGTGTCCAATCGCTTT
ACGGGTGAACCAATTGCAGGAGTCAATCAACCCATCAGAGTGATCGTCTT
GGGCAATCCAGGAGTGGGTAAGTCAACAATCCAAAACAGTCTAATGGGAG
AAGCATTGTTCAAATCCGGTATCTCTTTGGGAGGGGGTCTCACGAAGCGC
ATAGGAATTTGTGAAAGAGAAAGGTGGGCGTTTGTGGACACACCTGGTTT
GGATGATATATATCATAGAAACACGGCGGCGCAAGAATTATCAAAAGCTT
TCCGTGGACCTTGTGCTGCTAAAATCGTGTTCATCACGGCTTTGGAAGCG
GGTCGTGTGCGTGCGGCAGATGTGTGTACGCTGATGACCATTGTGGCAGC
GTTGAGGAAAGCAGGAGTTGAACTGAGTGATAGATATGCGCTGATTGTGA
ACAAATGTGAACCTTCATTGGCCGAGAACCTCGCTAGTGTGCAAAATCAT
GAACTTCGGGCAAAAGTTTTGGATCCGTTTGTCATGGTAGAGAAAGTGAG
CCAAGTAAGAATTGTTGGGCTTGAATCAAGTTTACGTGGAAAGAGTGGGG
TTTTGCTCAATGACGAAGAAAGCGCCAAGCTACGAGAGTTGGTGGAGCAT
ACGCCAACGATTTATCTGCCTGCAAAGCCAGAAGTGAATTTGGATGTGGG
GACTTTCGAACAGGCCACTCAAATGATTGAAGAGGGATTGAATCAACATT
CGAACGATGCTCAATCAGGTGCGAGACAGAGTAGAATCAGAACAGCGGAA
AATGAACGCAGAGAGAAAACCCATTCGCAGAAAAAGCAAAAGAGAGGGCT
AGGCGGAATTATTTCGTCTCTCCTCGATGCGTTGTTTGGGACCCCACATG
ATTCGGCTGCGCCGAAACGATGTCAAGGCGGCTTTGGAGATCCCCATGTG
CTAGAATGA

Coding sequence (CDS) from alignment at NODE_1567_length_9710_cov_4.702256:3991..5649-

>Gcaud3737.t1 ID=Gcaud3737.t1|Name=Gcaud3737.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1659bp|location=Sequence derived from alignment at NODE_1567_length_9710_cov_4.702256:3991..5649- (Gracilaria caudata M_176_S67 male)
ATGGAAGGTGGAGACAGCGAAAGACCGAGAAGCAACAATTTACACAATAA
GATGTCGTCGGGGAAAGGTGCCGACATAAGCTCTGGTCGAAAATCTGATG
AATATGGCGAGTGGGTATCGCAAGGTACAGCACACATGGCTTCGACGCAT
CAAAATGCTTCCGAGATGTATCCTGAATGTACAAGTGATACTTGGGGAAA
ATGTAAGAACAACCCAGACGAAACAAACGATCCTTACCTTTACGTCGATA
TCGCCGAGGGCGCCATACTTCTCCCCAATGAAGAACACAAGGCTTCACAT
GAACACCGGGATCATCCGGAACGTACGACGAGAAGAGAACATTGGACTCC
GCAAGAACACTGGACTCCACCACAACACCATGCTCCACAACAATACCGAA
CTACGCAAGAACTAAGGAATGGGCAAGAACATCGGACTGTGCAAGAACTA
TGTGCTCCAGAAGAACTACAGACTCCGCACGAACTGCAGACTCCGCAAGA
ACGAAGGACTCTGCAGGGACATCAGACGTCCCAAGGACACCGAGCTCCAC
ACAGTATGGCCTATCAGGCACATTTCTACCCCCAACACGTTCCTGAGCAT
CCTATGAAGTTTACAAGATATCCAAGTGGGCGAGACCCTTCCCCAGTTTC
GAAGCATCCTGTCACGATACCTTCGCCACTTGAGACAGACGAAAAGAAAG
CGCAAACTTCGTCACGCGGTGAGGTTGCAAACAAGGTGTCCAATCGCTTT
ACGGGTGAACCAATTGCAGGAGTCAATCAACCCATCAGAGTGATCGTCTT
GGGCAATCCAGGAGTGGGTAAGTCAACAATCCAAAACAGTCTAATGGGAG
AAGCATTGTTCAAATCCGGTATCTCTTTGGGAGGGGGTCTCACGAAGCGC
ATAGGAATTTGTGAAAGAGAAAGGTGGGCGTTTGTGGACACACCTGGTTT
GGATGATATATATCATAGAAACACGGCGGCGCAAGAATTATCAAAAGCTT
TCCGTGGACCTTGTGCTGCTAAAATCGTGTTCATCACGGCTTTGGAAGCG
GGTCGTGTGCGTGCGGCAGATGTGTGTACGCTGATGACCATTGTGGCAGC
GTTGAGGAAAGCAGGAGTTGAACTGAGTGATAGATATGCGCTGATTGTGA
ACAAATGTGAACCTTCATTGGCCGAGAACCTCGCTAGTGTGCAAAATCAT
GAACTTCGGGCAAAAGTTTTGGATCCGTTTGTCATGGTAGAGAAAGTGAG
CCAAGTAAGAATTGTTGGGCTTGAATCAAGTTTACGTGGAAAGAGTGGGG
TTTTGCTCAATGACGAAGAAAGCGCCAAGCTACGAGAGTTGGTGGAGCAT
ACGCCAACGATTTATCTGCCTGCAAAGCCAGAAGTGAATTTGGATGTGGG
GACTTTCGAACAGGCCACTCAAATGATTGAAGAGGGATTGAATCAACATT
CGAACGATGCTCAATCAGGTGCGAGACAGAGTAGAATCAGAACAGCGGAA
AATGAACGCAGAGAGAAAACCCATTCGCAGAAAAAGCAAAAGAGAGGGCT
AGGCGGAATTATTTCGTCTCTCCTCGATGCGTTGTTTGGGACCCCACATG
ATTCGGCTGCGCCGAAACGATGTCAAGGCGGCTTTGGAGATCCCCATGTG
CTAGAATGA