Gcaud8539.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8539.t1
Unique Name	Gcaud8539.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	329

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1538_length_9864_cov_4.520004	contig	NODE_1538_length_9864_cov_4.520004:829..1815 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1068978.AMETH_4560
PFAMs	ADH_N,ADH_zinc_N
Max annot lvl	201174\|Actinobacteria
KEGG ko	ko:K00344
Evalue	8e-06
EggNOG OGs	COG0604@1\|root,COG0604@2\|Bacteria,2GK7Y@201174\|Actinobacteria,4DXY4@85010\|Pseudonocardiales
EC	1.6.5.5
Description	NADPH quinone reductase
COG category	C
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8539	Gcaud8539	Gracilaria caudata M_176_S67 male	gene	NODE_1538_length_9864_cov_4.520004 829..1815 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8539.t1.start1	Gcaud8539.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1538_length_9864_cov_4.520004 829..831 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8539.t1.CDS1	Gcaud8539.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1538_length_9864_cov_4.520004 829..1815 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8539.t1.exon1	Gcaud8539.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1538_length_9864_cov_4.520004 829..1815 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8539.t1.stop1	Gcaud8539.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1538_length_9864_cov_4.520004 1813..1815 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8539.t1	Gcaud8539.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1538_length_9864_cov_4.520004 829..1815 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1538_length_9864_cov_4.520004:829..1815+
coding sequence from alignment at NODE_1538_length_9864_cov_4.520004:829..1815+

mRNA sequence

>Gcaud8539.t1 ID=Gcaud8539.t1|Name=Gcaud8539.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=329bp
MTELRELPTAMDALFLTRDTKRKRHFNLLAGSVPVPPAAPPHLLVEVKAA
AVSARDIAICRSLRALPGKRHPLRAPVPGCALAGVVVRAPPQSDFKSGET
VAALTRFGGGFGPYAALKPSECWRTHLSFADAAATAGAASAAFQAVRAAG
VAAGYTVAVAGVLTAPGALIAQTCRLVYGARVVAGVHGADQLSAAAKYAD
IVVDRKLEKVTSKIASVPIDVAFDVEGRLEQLCRIVKKGGVVIRVICSAE
RVCEKEAKRVRNLCRKKDITLRRIEGCIDSKAVESTKSLLHTLQLSAPSG
PAFGVRQWGPALRTAEKGVDVGAVLLLH*

spliced messenger RNA

>Gcaud8539.t1 ID=Gcaud8539.t1|Name=Gcaud8539.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=987bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:829..1815+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAGTTACGCGAGCTCCCCACCGCCATGGACGCGCTCTTCCTCAC
GCGAGACACCAAGCGCAAGCGCCACTTCAACCTGCTGGCCGGCTCCGTGC
CCGTGCCTCCCGCCGCGCCGCCGCATCTGCTCGTGGAGGTGAAGGCGGCC
GCAGTCAGCGCGCGCGACATCGCCATCTGTCGCTCGCTGCGCGCGCTGCC
TGGAAAGCGCCACCCGCTGCGCGCGCCCGTGCCGGGCTGCGCGCTGGCGG
GCGTGGTGGTGCGCGCGCCGCCGCAGTCTGATTTCAAGAGCGGAGAGACC
GTGGCCGCGCTCACCAGGTTTGGCGGCGGCTTTGGGCCGTATGCGGCGTT
GAAGCCGTCCGAGTGCTGGCGCACGCACTTGTCGTTTGCGGACGCCGCTG
CTACCGCTGGCGCTGCTTCTGCGGCGTTTCAGGCTGTCAGGGCTGCGGGC
GTGGCCGCTGGCTATACTGTGGCGGTTGCTGGCGTGCTCACCGCCCCGGG
CGCGCTCATTGCGCAGACTTGCCGGTTGGTGTACGGCGCTCGCGTTGTTG
CAGGCGTGCACGGCGCTGATCAGCTCAGCGCCGCTGCCAAGTACGCAGAT
ATTGTTGTGGATCGGAAACTAGAGAAGGTTACTTCTAAGATTGCAAGCGT
TCCGATTGATGTTGCGTTTGACGTTGAAGGAAGACTGGAGCAGCTTTGTC
GCATCGTCAAGAAAGGGGGCGTGGTTATCCGTGTTATTTGTTCTGCTGAG
CGCGTTTGTGAGAAGGAAGCGAAACGTGTTCGTAACTTGTGTCGCAAGAA
GGACATCACACTTCGTCGCATTGAGGGCTGTATTGATTCGAAAGCTGTGG
AAAGTACGAAAAGCTTGTTGCACACTTTGCAACTGTCGGCGCCAAGTGGT
CCTGCTTTCGGCGTGCGGCAGTGGGGACCTGCGTTGCGCACCGCCGAAAA
GGGCGTGGATGTGGGAGCAGTGCTGTTGCTGCATTGA

protein sequence of Gcaud8539.t1

>Gcaud8539.t1 ID=Gcaud8539.t1|Name=Gcaud8539.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=329bp
MTELRELPTAMDALFLTRDTKRKRHFNLLAGSVPVPPAAPPHLLVEVKAA
AVSARDIAICRSLRALPGKRHPLRAPVPGCALAGVVVRAPPQSDFKSGET
VAALTRFGGGFGPYAALKPSECWRTHLSFADAAATAGAASAAFQAVRAAG
VAAGYTVAVAGVLTAPGALIAQTCRLVYGARVVAGVHGADQLSAAAKYAD
IVVDRKLEKVTSKIASVPIDVAFDVEGRLEQLCRIVKKGGVVIRVICSAE
RVCEKEAKRVRNLCRKKDITLRRIEGCIDSKAVESTKSLLHTLQLSAPSG
PAFGVRQWGPALRTAEKGVDVGAVLLLH*

mRNA from alignment at NODE_1538_length_9864_cov_4.520004:829..1815+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8539.t1 ID=Gcaud8539.t1|Name=Gcaud8539.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=987bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:829..1815+ (Gracilaria caudata M_176_S67 male)
ATGACCGAGTTACGCGAGCTCCCCACCGCCATGGACGCGCTCTTCCTCAC
GCGAGACACCAAGCGCAAGCGCCACTTCAACCTGCTGGCCGGCTCCGTGC
CCGTGCCTCCCGCCGCGCCGCCGCATCTGCTCGTGGAGGTGAAGGCGGCC
GCAGTCAGCGCGCGCGACATCGCCATCTGTCGCTCGCTGCGCGCGCTGCC
TGGAAAGCGCCACCCGCTGCGCGCGCCCGTGCCGGGCTGCGCGCTGGCGG
GCGTGGTGGTGCGCGCGCCGCCGCAGTCTGATTTCAAGAGCGGAGAGACC
GTGGCCGCGCTCACCAGGTTTGGCGGCGGCTTTGGGCCGTATGCGGCGTT
GAAGCCGTCCGAGTGCTGGCGCACGCACTTGTCGTTTGCGGACGCCGCTG
CTACCGCTGGCGCTGCTTCTGCGGCGTTTCAGGCTGTCAGGGCTGCGGGC
GTGGCCGCTGGCTATACTGTGGCGGTTGCTGGCGTGCTCACCGCCCCGGG
CGCGCTCATTGCGCAGACTTGCCGGTTGGTGTACGGCGCTCGCGTTGTTG
CAGGCGTGCACGGCGCTGATCAGCTCAGCGCCGCTGCCAAGTACGCAGAT
ATTGTTGTGGATCGGAAACTAGAGAAGGTTACTTCTAAGATTGCAAGCGT
TCCGATTGATGTTGCGTTTGACGTTGAAGGAAGACTGGAGCAGCTTTGTC
GCATCGTCAAGAAAGGGGGCGTGGTTATCCGTGTTATTTGTTCTGCTGAG
CGCGTTTGTGAGAAGGAAGCGAAACGTGTTCGTAACTTGTGTCGCAAGAA
GGACATCACACTTCGTCGCATTGAGGGCTGTATTGATTCGAAAGCTGTGG
AAAGTACGAAAAGCTTGTTGCACACTTTGCAACTGTCGGCGCCAAGTGGT
CCTGCTTTCGGCGTGCGGCAGTGGGGACCTGCGTTGCGCACCGCCGAAAA
GGGCGTGGATGTGGGAGCAGTGCTGTTGCTGCATTGA

Coding sequence (CDS) from alignment at NODE_1538_length_9864_cov_4.520004:829..1815+

>Gcaud8539.t1 ID=Gcaud8539.t1|Name=Gcaud8539.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=987bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:829..1815+ (Gracilaria caudata M_176_S67 male)
ATGACCGAGTTACGCGAGCTCCCCACCGCCATGGACGCGCTCTTCCTCAC
GCGAGACACCAAGCGCAAGCGCCACTTCAACCTGCTGGCCGGCTCCGTGC
CCGTGCCTCCCGCCGCGCCGCCGCATCTGCTCGTGGAGGTGAAGGCGGCC
GCAGTCAGCGCGCGCGACATCGCCATCTGTCGCTCGCTGCGCGCGCTGCC
TGGAAAGCGCCACCCGCTGCGCGCGCCCGTGCCGGGCTGCGCGCTGGCGG
GCGTGGTGGTGCGCGCGCCGCCGCAGTCTGATTTCAAGAGCGGAGAGACC
GTGGCCGCGCTCACCAGGTTTGGCGGCGGCTTTGGGCCGTATGCGGCGTT
GAAGCCGTCCGAGTGCTGGCGCACGCACTTGTCGTTTGCGGACGCCGCTG
CTACCGCTGGCGCTGCTTCTGCGGCGTTTCAGGCTGTCAGGGCTGCGGGC
GTGGCCGCTGGCTATACTGTGGCGGTTGCTGGCGTGCTCACCGCCCCGGG
CGCGCTCATTGCGCAGACTTGCCGGTTGGTGTACGGCGCTCGCGTTGTTG
CAGGCGTGCACGGCGCTGATCAGCTCAGCGCCGCTGCCAAGTACGCAGAT
ATTGTTGTGGATCGGAAACTAGAGAAGGTTACTTCTAAGATTGCAAGCGT
TCCGATTGATGTTGCGTTTGACGTTGAAGGAAGACTGGAGCAGCTTTGTC
GCATCGTCAAGAAAGGGGGCGTGGTTATCCGTGTTATTTGTTCTGCTGAG
CGCGTTTGTGAGAAGGAAGCGAAACGTGTTCGTAACTTGTGTCGCAAGAA
GGACATCACACTTCGTCGCATTGAGGGCTGTATTGATTCGAAAGCTGTGG
AAAGTACGAAAAGCTTGTTGCACACTTTGCAACTGTCGGCGCCAAGTGGT
CCTGCTTTCGGCGTGCGGCAGTGGGGACCTGCGTTGCGCACCGCCGAAAA
GGGCGTGGATGTGGGAGCAGTGCTGTTGCTGCATTGA