Gcaud9496.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9496.t1
Unique NameGcaud9496.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length499
Homology
BLAST of Gcaud9496.t1 vs. uniprot
Match: A0A2V3IIV9_9FLOR (E3 ubiquitin-protein ligase MIB2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIV9_9FLOR)

HSP 1 Score: 470 bits (1210), Expect = 2.950e-159
Identity = 269/505 (53.27%), Postives = 352/505 (69.70%), Query Frame = 0
Query:    1 MSALLTSQQRSFRPTGKVVVVPDHDVSRLSYYLRCTTLDCGIDIIVDDLVDFKNVHKLPKARQDAIFRLAANEFSVSKMVNTTIFLDESGELCENRLNMFIELKKVTNVLAVGSSALVGGKQVEISKIMVFKPAWLQKYYFEPLQRWKEREQASGSRHQLQLLTSLLANIFRKDVTETASNHCDHCKGLEGSCVCEHACPPRQSTKCSAPXXXXXXXXXESAACEXXXXXXXXXXXKCSIVHTSIICDACRTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLRPRQEPKVRDGS----ALNAKAST--SSSATPAQVPSKPHKAKPDETEKALITFIGEKMCVSQMKDYLNENGVSYVGIREKLELLKLVWETQIEAMGAKELDAFIDAHCISCTEGRSVSAKRKAAVAAFDVIHK-RTAAQRTEAAFREGDVVQLCGLNKESMNGMLASVVRSEAVNGRVQVRLVDDENCRYNIRPENLQAVPQDLD 498
            M+A+ TSQ+ S R  G  V VP++DV RLSYYL C TL CG+DIIVDDLVDF+N H LP+ RQDAI+ LA +EF +S++++ TIFLDE G+LCE+R N F+ELK+VTN+LA+ SSA +GGKQV+++K+MVF+P WL+  Y+EPL R + R   S S   +Q+L  LL +I  +DVTE+ S+HC HCKGL+G+C C+  C P+ STKCSA  XXXXXXX E  A  XXXXXXXXXXX       SI+CD+C+  GL+G R+KC+ C +YDLCE+CY+ GKHE THPFS I R+GS PIH  PR+EP  ++ S    A NA  S+  S+S  P Q           + + +L +FIGE M +++MK YL  NGVSYVG  EK EL KLVWETQ+E+M A EL AF+D   I+     SV  +R+AA AAF+ I     + Q++  +F  GD V L GL K+SMNG LA+VV +E VNGRVQV+LV  +  R+N++ ENL+   +DLD
Sbjct:    1 MAAIATSQEHSVRAVGTEVTVPNYDVCRLSYYLNCCTLGCGVDIIVDDLVDFRNAHTLPQHRQDAIYELATDEFKISEVLDKTIFLDEEGDLCEDRDNEFLELKQVTNILAISSSATLGGKQVQVTKVMVFRPRWLKHNYYEPLNRRQGRTAISKS---VQVLARLLEDIVVEDVTESKSDHCAHCKGLDGNCACKRGCAPQNSTKCSAVHXXXXXXXFEGGAXXXXXXXXXXXXXXXXXXXESIVCDSCKAEGLQGKRYKCEKCFNYDLCEDCYQAGKHETTHPFSMIERIGSRPIHQIPRKEPTKQNDSMQQQAHNADRSSNCSTSLFPTQQTVVHASTLRGDGQNSLRSFIGETMSIAEMKGYLENNGVSYVGATEKRELKKLVWETQVESMSAGELKAFMDTQGITTAAQCSVLEERRAAKAAFETIQSTEQSRQKSRPSFCAGDRVYLVGLKKQSMNGKLATVVTNELVNGRVQVQLVGSKQ-RFNVKVENLELSSEDLD 501          
BLAST of Gcaud9496.t1 vs. uniprot
Match: A0A7S1GIV5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIV5_CYCTE)

HSP 1 Score: 276 bits (705), Expect = 9.030e-84
Identity = 193/506 (38.14%), Postives = 272/506 (53.75%), Query Frame = 0
Query:    4 LLTSQQRSFRPTGKVVVVPDHDVSRLSYYLRCTTLDCGIDIIVDDLVDFKNVHKLPKARQDAIFRLAANEFSVSKMVNTTIFLDESGELCENRLNMFIELKKVTNVLAVGSSALVGGKQVEISKIMVFKPAWLQKYYFEPLQRWKER-EQASGSRHQLQL---LTSLLANIFRKDVTETASN----HCDHCKGLEGSCVCEHACPPRQS-TKCSAPXXXXXXXXXESAACEXXXXXXXXXXXKCSIVHTSIICDACRTTGLRGSRFKCDVCPDYDLCEECYR-GGK-HELTHPFSKIGRVGSNPIHLRPRQEPKVRDGSALNAKASTSSSATPAQVPSKPHKAKPDETEKALITFIGEKMCVSQMKDYLNENGVSYVGIREKLELLKLVWETQIEAMGAKELDAFIDAHCISCTEGRSVSAKRKAAVAAFDVIHKRTAAQRTEAAFREGDVVQLCGLNKESMNGMLASVVRSEAVNGRVQVRLVDDENCRYNIRPENLQAVPQDLD 498
            +L  ++ S + TG+ V  P +DV++++YYL C T+  G+DIIVD+LVDF+NVH+LP +RQDA+F++A  +FS    ++  I+ DESG+LC N  N F E+ +V ++LA+ SS ++GGK+ +++KIMVFK AWL+  Y +PL R K R ++ S +  Q Q    L SLLA +    V++        HC HC+G  G+C C H C P+ S TKCSA  XXXXXXXX      XXXXX      KC  VH+++ CD C  TG +G+RFKC  C +YDLCE CY  GGK H+LTHPF +  RVGS+P+ L PR+E  +                TP +     ++   D    A  T +G                +S   + +++EL+ L       A G  E DA         T G  V  + K       +   +    +    F  G +V L GL    MNG  A +V S    GRV  RL  D+    +I+PEN++ V   LD
Sbjct:   14 VLGGKETSMKQTGRKVTFPQNDVNKVAYYLHCVTVSLGLDIIVDELVDFRNVHRLPSSRQDAVFKVAIEDFSPDVFLDKLIYHDESGKLCGNSNNEFYEVTQVQSLLAIQSSVVIGGKKTQVAKIMVFKKAWLENNYIQPLNRNKARLQRISRATTQAQAEDALASLLAGLLVAAVSDXXXXXXXXHCSHCRGNYGTCACNHGCKPKDSRTKCSAVHXXXXXXXXXXXX-XXXXXXAEGMYSKCYPVHSTVTCDGCHKTGFKGARFKCKDCSNYDLCESCYNEGGKRHDLTHPFDRYDRVGSDPVSLSPRREKTI----------------TPPR-----NRETADNIPIARATPVGG-------------GSISGYKVGDEVELIGLQAANLNGATGVVEQDAV--------TPGGRVQVRLKTKQPG-RLASLKPQNLKLSVNFHPGQMVILVGLKSSEMNGCQA-MVESYIPGGRVMCRLYGDKV--VSIKPENIELVADTLD 472          
BLAST of Gcaud9496.t1 vs. uniprot
Match: A0A067T8F3_GALM3 (Uncharacterized protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T8F3_GALM3)

HSP 1 Score: 184 bits (468), Expect = 1.330e-46
Identity = 101/292 (34.59%), Postives = 147/292 (50.34%), Query Frame = 0
Query:   12 FRPTGKVVVVPDHDVSRLSYYLRCTTLDCGIDIIVDDLVDFKNVHKLPKARQDAIFRLAANEFSVSKMVNTTIFLDESGELCENRL-NMFIELKKVTNVLAVGSSALVGGKQVEISKIMVFKPAWLQKYYFEPLQRWKEREQASGSRHQLQLLTSLLANIFRKDVTETASNHCDHCKGLEGSCVCEHACPPRQSTKCSAPXXXXXXXXXESAACEXXXXXXXXXXXKCSIVHTSIICDACRTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLRPR 302
            F+ TG  +V+PD D++RL YYL C T+  G+D++ DDLVDF+N ++L +AR   + + A  EFS  + +N  IFLD+ GE+      N F+ +    ++++V S+ L+ GK  +++K+M FK +WL+ YY  P+ R                  +LL            S HC HCKG  G C CE  CP      C  P          S                 S      +CD CR     G+R++C+ C D+DLC++CY   +H+LTH F +I R GS P HL PR
Sbjct:  706 FKETGYTMVIPDDDLARLMYYLHCVTVGVGLDVLQDDLVDFRNYNRLSQARITLVLKYAI-EFSPDEFLNKLIFLDDEGEVVTGASPNKFVTISTACDIVSVQSNILIAGKVKDVTKVMFFKSSWLELYYTGPIAR------------------ALLD-----------SRHCAHCKGASGMCQCE-LCPRPSDANCQ-PLLDALIDALNSTTLSTPAQPAAPARTTTS---HECVCDGCRKQYPEGARYRCEDCEDFDLCQDCYTAQRHDLTHRFMQIARPGSKPFHLYPR 962          
BLAST of Gcaud9496.t1 vs. uniprot
Match: A0A409XWW5_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409XWW5_9AGAR)

HSP 1 Score: 176 bits (447), Expect = 3.980e-45
Identity = 151/579 (26.08%), Postives = 247/579 (42.66%), Query Frame = 0
Query:   16 GKVVVVPDHDVSRLSYYLRCTTLDCGIDIIVDDLVDFKNVHKLPKARQDAIFRLAANEFSVSKMVNTTIFLDESGELCENRL-NMFIELKKVTNVLAVGSSALVGGKQVEISKIMVFKPAWLQKYYFEPLQRWKEREQASGSRH---------------------------QLQLLTSLLANIF-------------------RKDVT----------ETASNHCDHCKGLE--GSCVCEHACPPR----QSTKCSAPXXXXXXXXXESAACEXXXXXXXXXXXKCSIVHTS----IICDACRTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLRPR----------QEPKVRD---------GSALNAKAST------SSSATPAQVPSKPHKAKPDETEKALITFIGEKMCVSQMKDYLNENGVSYVGIREKLELLKLVWETQIEAMGAKELDAFIDAHCISCTEGRSVSAKRKAAVAAFDVIHKRTAAQRTE--------AAFREGDVVQLCGLNKESMNGMLASVVRSEAVNGRVQVRLVDDENCRYNIRPENLQAVP 494
            G  +V+PD DV+R+ YYL C T+  G+DI+VDDLVDF+N  +L   R   +F+ A  EFS    +N  IFLD+ GE+      N F+ +    +++ V  +  + G+  +I+ +M FK AWL+ +Y  P+ R     Q  GSRH                            L +L  +L+N                     R  ++          ETA   C+ C+  +    C  +    P     Q  +  A           S A             +   V ++      CD C    + G+RFKC+VC D+DLC++CY   +H   H F +I R G+  IHL PR          Q+P+ R           + +N           S++A P   P+ P       +  A        M VS++K+YL +NGV++  + +K  L +  WET +++                  + R ++++R+ A  AF    + +A + +E        +  +  D+V L GL++E MNG  A+V++++  NGR +V  V++    + ++ ENL   P
Sbjct:   15 GVTMVIPDDDVARVMYYLHCVTVGVGLDILVDDLVDFQNYRRLAPHRVALVFKYAL-EFSPEVFLNKLIFLDDEGEVVTGTSRNKFVTVSTACDIVHVERNIAISGQVKDITTVMFFKSAWLEHFYTFPITR-----QVLGSRHCAHCDGKSGVCACNSGCNTMPESQCEPLLNMLVGVLSNTSISSPQTAPTTSRPAPTLSPRAHMSTCDGCGWKHYETARYRCEDCEDYDLCQDCYSDKRHNPSHRFLQIERPGAKPYRLPARSPRSGAPPAPISRAPSMNPEAVPVKSANSHACNCDGCGWQFIDGARFKCEVCEDFDLCKDCYNAKRHSAAHRFMQIDRPGATAIHLAPRNTLTTPISPTQQPRARSPVPPPPARPAAPVNXXXXXXXXXXXSAAAPP---PANPPSYVSAISHTASSPAFYNSMKVSELKEYLRDNGVAHEDVLDKETLCRRAWETHVDSXXXXXXXXXXXXXXXXXXDCRDIASRREKAKQAFQST-RHSAPEPSERKTDTSGTSPLQNNDIVVLTGLSREDMNGKQATVLQADCGNGRAEVH-VEELGRAFKVKFENLILNP 582          
BLAST of Gcaud9496.t1 vs. uniprot
Match: UPI001458207C (uncharacterized protein LOC117320668 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458207C)

HSP 1 Score: 84.3 bits (207), Expect = 3.320e-15
Identity = 58/189 (30.69%), Postives = 96/189 (50.79%), Query Frame = 0
Query:    3 ALLTSQQRSFRPTGKVVVVPDHDVSRLSYYLRCTTLDCGIDIIVDD------LVDFKNVHKLPKARQDAIFRLAANEFSVSKMVNTTIFLDESGELCENRLNMFIELKKVTNVLAVGSSALVGGKQVEISKIMVFKPAWLQKYYFEPLQRWKER--EQASGSRHQLQLLTSLLANIFRKDVTETASNHC 183
            A++  QQ   R  G+ V VP H+V+R  +YL+C    C +  + D+        DF+N + L +A  DA+  L  +    ++++   +F DE  E+C N  N F EL+ V   + + +  L+ G+Q  +++IM FK AWLQ Y   PLQ   ER   +A+    + + +T   A  +R+  +  A   C
Sbjct:    2 AVMQRQQLGIREIGESVTVPQHNVARAMFYLKCI---CNVLDLNDENSNLGKFTDFRNYYLLSEADIDALTILIVS-VKPAELLGKCLFHDE--EICGNSNNKFFELEDVRQNMVIVNDILIAGQQRRVNRIMFFKMAWLQLYCLTPLQVLGERLGRRAAEIEARKRAITYQAAPAYRQQQSTQARPSC 184          
BLAST of Gcaud9496.t1 vs. uniprot
Match: A0A7K6GU20_9PASS (MIB2 ligase (Fragment) n=5 Tax=Passeriformes TaxID=9126 RepID=A0A7K6GU20_9PASS)

HSP 1 Score: 77.4 bits (189), Expect = 9.190e-14
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0
Query:  242 HTSIICDACRTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLRPRQ 303
            H +IICD C+  G+RG R+KC +C DYDLC +CY   KH+L H F +     S P+ + PRQ
Sbjct:    5 HPNIICDCCKKHGIRGMRWKCKMCFDYDLCTQCYMNNKHDLGHSFERYETAHSQPVLVSPRQ 66          
BLAST of Gcaud9496.t1 vs. uniprot
Match: UPI0007676512 (E3 ubiquitin-protein ligase MIB2 n=1 Tax=Myotis davidii TaxID=225400 RepID=UPI0007676512)

HSP 1 Score: 84.0 bits (206), Expect = 1.130e-13
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 0
Query:  242 HTSIICDACRTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLRPRQEPKV 307
            H +IICD C+  GLRG R+KC VC DYDLC +CY   KH+L H F +     S P+ L PRQ  KV
Sbjct:   13 HPNIICDCCKKHGLRGMRWKCRVCADYDLCTQCYLNNKHDLAHAFERYETAHSRPVTLSPRQGDKV 78          
BLAST of Gcaud9496.t1 vs. uniprot
Match: Q8R516-3 (Isoform 3 of E3 ubiquitin-protein ligase MIB2 n=3 Tax=Euarchontoglires TaxID=314146 RepID=Q8R516-3)

HSP 1 Score: 82.0 bits (201), Expect = 1.240e-13
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0
Query:  240 IVHTSIICDACRTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLRPRQ 303
            I H +IICD C+  GLRG R+KC VC DYDLC +CY   KH+LTH F +     S P+ L PRQ
Sbjct:   84 IRHPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKHDLTHAFERYETSHSRPVTLSPRQ 147          
BLAST of Gcaud9496.t1 vs. uniprot
Match: A0A6P4WMR3_PANPR (RING-type E3 ubiquitin transferase n=1 Tax=Panthera pardus TaxID=9691 RepID=A0A6P4WMR3_PANPR)

HSP 1 Score: 84.3 bits (207), Expect = 1.530e-13
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 0
Query:  242 HTSIICDACRTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLRPRQ 303
            H +I+CD C+  GLRG R+KC VC DYDLC +CY  GKH+LTH F +     S P+ L PRQ
Sbjct:   86 HPNIVCDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHGKHDLTHAFERYETAHSRPVTLSPRQ 147          
BLAST of Gcaud9496.t1 vs. uniprot
Match: UPI001560463F (E3 ubiquitin-protein ligase MIB2 isoform X9 n=1 Tax=Pan paniscus TaxID=9597 RepID=UPI001560463F)

HSP 1 Score: 84.7 bits (208), Expect = 1.530e-13
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 0
Query:  238 CSIVHTSIICDACRTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLRPRQ 303
            C + H +IICD C+  GLRG R+KC VC DYDLC +CY   KHEL H F +     S P+ L PRQ
Sbjct:  332 CCVRHPNIICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKHELAHAFDRYETAHSRPVTLSPRQ 397          
The following BLAST results are available for this feature:
BLAST of Gcaud9496.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIV9_9FLOR2.950e-15953.27E3 ubiquitin-protein ligase MIB2 n=1 Tax=Gracilari... [more]
A0A7S1GIV5_CYCTE9.030e-8438.14Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A067T8F3_GALM31.330e-4634.59Uncharacterized protein n=1 Tax=Galerina marginata... [more]
A0A409XWW5_9AGAR3.980e-4526.08Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
UPI001458207C3.320e-1530.69uncharacterized protein LOC117320668 n=1 Tax=Pecte... [more]
A0A7K6GU20_9PASS9.190e-1448.39MIB2 ligase (Fragment) n=5 Tax=Passeriformes TaxID... [more]
UPI00076765121.130e-1353.03E3 ubiquitin-protein ligase MIB2 n=1 Tax=Myotis da... [more]
Q8R516-31.240e-1354.69Isoform 3 of E3 ubiquitin-protein ligase MIB2 n=3 ... [more]
A0A6P4WMR3_PANPR1.530e-1354.84RING-type E3 ubiquitin transferase n=1 Tax=Panther... [more]
UPI001560463F1.530e-1353.03E3 ubiquitin-protein ligase MIB2 isoform X9 n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000433Zinc finger, ZZ-typeSMARTSM00291zz_5coord: 241..286
e-value: 4.6E-14
score: 62.7
IPR000433Zinc finger, ZZ-typePFAMPF00569ZZcoord: 242..279
e-value: 7.2E-9
score: 35.3
IPR000433Zinc finger, ZZ-typePROSITEPS01357ZF_ZZ_1coord: 247..274
IPR000433Zinc finger, ZZ-typePROSITEPS50135ZF_ZZ_2coord: 241..288
score: 13.715246
IPR043145Zinc finger, ZZ-type superfamilyGENE3D3.30.60.90coord: 236..290
e-value: 8.1E-15
score: 56.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..328
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..336
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 237..296

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1494_length_10218_cov_4.581614contigNODE_1494_length_10218_cov_4.581614:2321..3817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9496.t1Gcaud9496.t1Gracilaria caudata M_176_S67 malemRNANODE_1494_length_10218_cov_4.581614 2321..3817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9496.t1 ID=Gcaud9496.t1|Name=Gcaud9496.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=499bp
MSALLTSQQRSFRPTGKVVVVPDHDVSRLSYYLRCTTLDCGIDIIVDDLV
DFKNVHKLPKARQDAIFRLAANEFSVSKMVNTTIFLDESGELCENRLNMF
IELKKVTNVLAVGSSALVGGKQVEISKIMVFKPAWLQKYYFEPLQRWKER
EQASGSRHQLQLLTSLLANIFRKDVTETASNHCDHCKGLEGSCVCEHACP
PRQSTKCSAPGHCEHCKGIESAACECQADCPRSQFAKCSIVHTSIICDAC
RTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLR
PRQEPKVRDGSALNAKASTSSSATPAQVPSKPHKAKPDETEKALITFIGE
KMCVSQMKDYLNENGVSYVGIREKLELLKLVWETQIEAMGAKELDAFIDA
HCISCTEGRSVSAKRKAAVAAFDVIHKRTAAQRTEAAFREGDVVQLCGLN
KESMNGMLASVVRSEAVNGRVQVRLVDDENCRYNIRPENLQAVPQDLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000433Znf_ZZ
IPR043145Znf_ZZ_sf