Gcaud9494.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9494.t1
Unique NameGcaud9494.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1494_length_10218_cov_4.581614contigNODE_1494_length_10218_cov_4.581614:2..574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004344973.1
Preferred nameLDHB
PFAMsLdh_1_C,Ldh_1_N
Max annot lvl33154|Opisthokonta
KEGG rclassRC00031,RC00044
KEGG koko:K00016
KEGG ReactionR00703,R01000,R03104
KEGG Pathwayko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922
GOsGO:0000166,GO:0000302,GO:0000768,GO:0001666,GO:0003674,GO:0003824,GO:0004457,GO:0004459,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006096,GO:0006113,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006949,GO:0006950,GO:0006979,GO:0007154,GO:0007275,GO:0007520,GO:0007525,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0014902,GO:0015980,GO:0016020,GO:0016052,GO:0016053,GO:0016310,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019244,GO:0019249,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019516,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019752,GO:0019899,GO:0019900,GO:0030154,GO:0030317,GO:0031514,GO:0031667,GO:0031668,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0034284,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035686,GO:0036094,GO:0036126,GO:0036293,GO:0040011,GO:0042221,GO:0042493,GO:0042542,GO:0042692,GO:0042802,GO:0042866,GO:0042981,GO:0042995,GO:0043065,GO:0043067,GO:0043068,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043627,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045121,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046939,GO:0048037,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051146,GO:0051179,GO:0051186,GO:0051188,GO:0051287,GO:0051591,GO:0051674,GO:0051716,GO:0055086,GO:0055114,GO:0061061,GO:0065007,GO:0070013,GO:0070482,GO:0070887,GO:0071496,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097223,GO:0097237,GO:0097722,GO:0097729,GO:0098589,GO:0098754,GO:0098805,GO:0098857,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901698,GO:1901700,GO:1990748
Evalue4.53e-34
EggNOG OGsCOG0039@1|root,KOG1495@2759|Eukaryota,38G9C@33154|Opisthokonta
EC1.1.1.27
DescriptionBelongs to the LDH MDH superfamily
COG categoryC
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9494Gcaud9494Gracilaria caudata M_176_S67 malegeneNODE_1494_length_10218_cov_4.581614 2..574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9494.t1Gcaud9494.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1494_length_10218_cov_4.581614 2..574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9494.t1.CDS1Gcaud9494.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1494_length_10218_cov_4.581614 2..137 -
Gcaud9494.t1.CDS2Gcaud9494.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1494_length_10218_cov_4.581614 225..574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9494.t1.exon1Gcaud9494.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1494_length_10218_cov_4.581614 2..137 -
Gcaud9494.t1.exon2Gcaud9494.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1494_length_10218_cov_4.581614 225..574 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9494.t1.intron1Gcaud9494.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1494_length_10218_cov_4.581614 138..224 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9494.t1.start1Gcaud9494.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1494_length_10218_cov_4.581614 572..574 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9494.t1 ID=Gcaud9494.t1|Name=Gcaud9494.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=162bp
MGRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSI
THSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKL
SPDAILVVVSNPCDVLTALAQRARVAAGEVHAVIIGEHGDSSVAAWSIAT
ISGLPLRAVSTD
back to top

spliced messenger RNA

>Gcaud9494.t1 ID=Gcaud9494.t1|Name=Gcaud9494.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=486bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:2..574- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGCGTGGGCGCCGCCATCGCCGACGCCGTATCGCGCCGCGCGCT
CGCCACGCACCTGGTGCTCATCGACGTGGTCGCCTCGCGCGCCGAGAGCG
AGGCGCTCGATCTGTCCGACGCCATGGCGCTTCTTCACCCCATGAGCATC
ACCCATTCGTCCGAAATGAGCGCCACAAGCGATTCCAATCTCATCTTCAT
CACCGCCGGCGCGCGTCAGCGCCCGCAAGAGTCGCGGCTGCAACTGCTGG
GAAGAAACGTGGCCATCCTGTCCTCGTTCGTGCCGCAGCTCGTCAAGCTG
TCGCCCGACGCCATCCTGGTGGTGGTGTCCAACCCGTGCGACGTGCTCAC
CGCGCTTGCGCAGCGCGCGCGCGTGGCCGCCGGCGAGGTACACGCGGTGA
TCATCGGAGAACACGGCGACTCCAGCGTGGCGGCGTGGTCCATCGCCACC
ATCAGCGGGCTGCCGCTTCGCGCCGTGTCCACCGAT
back to top

protein sequence of Gcaud9494.t1

>Gcaud9494.t1 ID=Gcaud9494.t1|Name=Gcaud9494.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=162bp
MGRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSI
THSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKL
SPDAILVVVSNPCDVLTALAQRARVAAGEVHAVIIGEHGDSSVAAWSIAT
ISGLPLRAVSTD
back to top

mRNA from alignment at NODE_1494_length_10218_cov_4.581614:2..574-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9494.t1 ID=Gcaud9494.t1|Name=Gcaud9494.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=573bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:2..574- (Gracilaria caudata M_176_S67 male)
ATGGGGCGCGTGGGCGCCGCCATCGCCGACGCCGTATCGCGCCGCGCGCT
CGCCACGCACCTGGTGCTCATCGACGTGGTCGCCTCGCGCGCCGAGAGCG
AGGCGCTCGATCTGTCCGACGCCATGGCGCTTCTTCACCCCATGAGCATC
ACCCATTCGTCCGAAATGAGCGCCACAAGCGATTCCAATCTCATCTTCAT
CACCGCCGGCGCGCGTCAGCGCCCGCAAGAGTCGCGGCTGCAACTGCTGG
GAAGAAACGTGGCCATCCTGTCCTCGTTCGTGCCGCAGCTCGTCAAGCTG
TCGCCCGACGCCATCCTGGTGGTGGTGTCCAACCCGTGCGACGTGCTCAC
GTACGTCACCGCGCGTCTGGCGGGAGACGCCGCGCACCAGCGCGTGATCG
GCTCCGGCACTAACCTCGACTCCGCGCGTCTCGTCAGCGCGCTTGCGCAG
CGCGCGCGCGTGGCCGCCGGCGAGGTACACGCGGTGATCATCGGAGAACA
CGGCGACTCCAGCGTGGCGGCGTGGTCCATCGCCACCATCAGCGGGCTGC
CGCTTCGCGCCGTGTCCACCGAT
back to top

Coding sequence (CDS) from alignment at NODE_1494_length_10218_cov_4.581614:2..574-

>Gcaud9494.t1 ID=Gcaud9494.t1|Name=Gcaud9494.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=486bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:2..574- (Gracilaria caudata M_176_S67 male)
ATGGGGCGCGTGGGCGCCGCCATCGCCGACGCCGTATCGCGCCGCGCGCT
CGCCACGCACCTGGTGCTCATCGACGTGGTCGCCTCGCGCGCCGAGAGCG
AGGCGCTCGATCTGTCCGACGCCATGGCGCTTCTTCACCCCATGAGCATC
ACCCATTCGTCCGAAATGAGCGCCACAAGCGATTCCAATCTCATCTTCAT
CACCGCCGGCGCGCGTCAGCGCCCGCAAGAGTCGCGGCTGCAACTGCTGG
GAAGAAACGTGGCCATCCTGTCCTCGTTCGTGCCGCAGCTCGTCAAGCTG
TCGCCCGACGCCATCCTGGTGGTGGTGTCCAACCCGTGCGACGTGCTCAC
CGCGCTTGCGCAGCGCGCGCGCGTGGCCGCCGGCGAGGTACACGCGGTGA
TCATCGGAGAACACGGCGACTCCAGCGTGGCGGCGTGGTCCATCGCCACC
ATCAGCGGGCTGCCGCTTCGCGCCGTGTCCACCGAT
back to top