Gcaud3202.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3202.t1
Unique NameGcaud3202.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1482_length_10324_cov_4.811199contigNODE_1482_length_10324_cov_4.811199:7672..8022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3202Gcaud3202Gracilaria caudata M_176_S67 malegeneNODE_1482_length_10324_cov_4.811199 7672..8022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3202.t1Gcaud3202.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1482_length_10324_cov_4.811199 7672..8022 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3202.t1.stop1Gcaud3202.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1482_length_10324_cov_4.811199 7672..7674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3202.t1.CDS1Gcaud3202.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1482_length_10324_cov_4.811199 7672..7769 -
Gcaud3202.t1.CDS2Gcaud3202.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1482_length_10324_cov_4.811199 7884..8022 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3202.t1.exon1Gcaud3202.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1482_length_10324_cov_4.811199 7672..7769 -
Gcaud3202.t1.exon2Gcaud3202.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1482_length_10324_cov_4.811199 7884..8022 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3202.t1.intron1Gcaud3202.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1482_length_10324_cov_4.811199 7770..7883 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3202.t1.start1Gcaud3202.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1482_length_10324_cov_4.811199 8020..8022 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3202.t1 ID=Gcaud3202.t1|Name=Gcaud3202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=79bp
MTESDSRVRKPLIRLFIRSRGRESRPSSLLPLSRALPTVNSSDAKLATEE
SMSPFLVQKDTSSGQRSIRWSFFLYAVE*
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spliced messenger RNA

>Gcaud3202.t1 ID=Gcaud3202.t1|Name=Gcaud3202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=237bp|location=Sequence derived from alignment at NODE_1482_length_10324_cov_4.811199:7672..8022- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGAGTCTGATTCTAGAGTCAGAAAGCCTCTCATTCGTTTGTTCAT
CCGGTCTCGGGGCCGAGAGTCTCGGCCCTCTAGCCTATTACCACTATCCC
GAGCGCTCCCGACCGTGAACAGCTCAGATGCAAAGCTGGCCACTGAAGAA
TCTATGTCACCCTTCCTGGTCCAGAAAGACACCTCCAGTGGGCAAAGAAG
TATACGATGGTCATTCTTTTTGTATGCAGTTGAATGA
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protein sequence of Gcaud3202.t1

>Gcaud3202.t1 ID=Gcaud3202.t1|Name=Gcaud3202.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=79bp
MTESDSRVRKPLIRLFIRSRGRESRPSSLLPLSRALPTVNSSDAKLATEE
SMSPFLVQKDTSSGQRSIRWSFFLYAVE*
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mRNA from alignment at NODE_1482_length_10324_cov_4.811199:7672..8022-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3202.t1 ID=Gcaud3202.t1|Name=Gcaud3202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp|location=Sequence derived from alignment at NODE_1482_length_10324_cov_4.811199:7672..8022- (Gracilaria caudata M_176_S67 male)
ATGACTGAGTCTGATTCTAGAGTCAGAAAGCCTCTCATTCGTTTGTTCAT
CCGGTCTCGGGGCCGAGAGTCTCGGCCCTCTAGCCTATTACCACTATCCC
GAGCGCTCCCGACCGTGAACAGCTCAGATGCAAAGCTGGGTGCGTCAAGC
ACATAATCCACATGCTCATCAGAACAGAACTAACGGTGTATAGGTTGGTA
ATAAGGGGGGTCGGTTGCACGGCTTCAATTGCGACGTGAATATGTTTCAA
AAGCCACTGAAGAATCTATGTCACCCTTCCTGGTCCAGAAAGACACCTCC
AGTGGGCAAAGAAGTATACGATGGTCATTCTTTTTGTATGCAGTTGAATG
A
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Coding sequence (CDS) from alignment at NODE_1482_length_10324_cov_4.811199:7672..8022-

>Gcaud3202.t1 ID=Gcaud3202.t1|Name=Gcaud3202.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=237bp|location=Sequence derived from alignment at NODE_1482_length_10324_cov_4.811199:7672..8022- (Gracilaria caudata M_176_S67 male)
ATGACTGAGTCTGATTCTAGAGTCAGAAAGCCTCTCATTCGTTTGTTCAT
CCGGTCTCGGGGCCGAGAGTCTCGGCCCTCTAGCCTATTACCACTATCCC
GAGCGCTCCCGACCGTGAACAGCTCAGATGCAAAGCTGGCCACTGAAGAA
TCTATGTCACCCTTCCTGGTCCAGAAAGACACCTCCAGTGGGCAAAGAAG
TATACGATGGTCATTCTTTTTGTATGCAGTTGAATGA
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