Gcaud9816.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9816.t1
Unique NameGcaud9816.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length313
Homology
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BLAST of Gcaud9816.t1 vs. uniprot
Match: A0A2V3ILH2_9FLOR (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILH2_9FLOR)

HSP 1 Score: 82.4 bits (202), Expect = 1.440e-14
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 0 
Query:   17 MQPNIPLADMHAPKTTSPETPTDKP-FRCHYVDCLRPFQRKTSLTNHLKAHKNVNSRSINRSRRAR 81
            M PN  +     P TT+ E  T  P F+CHY DC+R F+RKTSLTNHLKAHKN+NSRSINRS+RAR
Sbjct:    1 MHPNAHVGGFSTPSTTATEAHTGGPTFQCHYEDCMRIFRRKTSLTNHLKAHKNINSRSINRSKRAR 66
The following BLAST results are available for this feature:
BLAST of Gcaud9816.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILH2_9FLOR1.440e-1463.64C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..94
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 26..101
e-value: 1.2E-6
score: 30.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..312
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 44..66
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 42..71
score: 10.699455

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1454_length_10529_cov_4.491952contigNODE_1454_length_10529_cov_4.491952:2793..3731 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9816.t1Gcaud9816.t1Gracilaria caudata M_176_S67 malemRNANODE_1454_length_10529_cov_4.491952 2793..3731 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9816.t1 ID=Gcaud9816.t1|Name=Gcaud9816.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
MMVDAPWTPHTNACAPMQPNIPLADMHAPKTTSPETPTDKPFRCHYVDCL
RPFQRKTSLTNHLKAHKNVNSRSINRSRRARKRLEQRRRAAEAAASEMDG
GPLPLRHHATDVSSIAAAVPQIVSNSDASTSHAAEAEVQGACNVLQDLPQ
TAWAFVDEPVAGMAVPVMTPQPAPVPAAVEGGIGVEETEPFVYSSQAISL
TGACFGGGFESAPTERYWDDGDGLGGLLQGSMLPVPFEGAMHPGPEEFIL
HVPLGGVYGTGPSGDGMEARLGRSESARSEQEQGFEGGADNEYGGGEASS
SLPHMVLFNEGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type