Gcaud2982.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2982.t1
Unique NameGcaud2982.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1449_length_10591_cov_14.789238contigNODE_1449_length_10591_cov_14.789238:9345..9833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2982Gcaud2982Gracilaria caudata M_176_S67 malegeneNODE_1449_length_10591_cov_14.789238 9345..9833 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2982.t1.stop1Gcaud2982.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1449_length_10591_cov_14.789238 9345..9347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2982.t1.CDS1Gcaud2982.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1449_length_10591_cov_14.789238 9345..9833 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2982.t1.exon1Gcaud2982.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1449_length_10591_cov_14.789238 9345..9833 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2982.t1.start1Gcaud2982.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1449_length_10591_cov_14.789238 9831..9833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2982.t1Gcaud2982.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1449_length_10591_cov_14.789238 9345..9833 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2982.t1 ID=Gcaud2982.t1|Name=Gcaud2982.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=163bp
MLYFGGISHHGIQHVTTPFITRAMPKALVTVLPFVPSVAARAGASALRRR
VAPLLGADTNASDAAAKTALFASLRKLDACFENELQLYFFGTAGPTAADF
GVFAALKGLLHPIPEISAELKGGYPDCLRNASGLSRLQAFFHRMDEQFYR
GKIDWSSVPLKL*
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spliced messenger RNA

>Gcaud2982.t1 ID=Gcaud2982.t1|Name=Gcaud2982.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_1449_length_10591_cov_14.789238:9345..9833- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTACTTTGGCGGAATCTCTCACCACGGCATTCAGCATGTCACCAC
ACCGTTCATTACGCGCGCGATGCCCAAAGCGCTGGTCACCGTGTTGCCGT
TTGTGCCCAGCGTGGCCGCCAGAGCGGGTGCAAGCGCGCTGCGTCGACGC
GTCGCGCCGTTGTTAGGCGCCGATACCAATGCGAGCGACGCCGCCGCGAA
GACCGCGTTGTTCGCGTCGCTGCGCAAGTTGGACGCGTGCTTTGAAAATG
AGCTGCAGCTGTACTTTTTCGGCACCGCCGGTCCCACCGCCGCGGACTTT
GGTGTGTTTGCGGCGCTCAAGGGACTGTTGCACCCCATTCCGGAGATCTC
TGCGGAATTGAAAGGCGGCTATCCCGACTGTCTGCGTAACGCCAGTGGGT
TAAGTCGATTGCAGGCGTTTTTCCATCGCATGGACGAGCAGTTTTATCGC
GGCAAGATTGATTGGTCTTCGGTTCCGCTCAAGTTGTGA
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protein sequence of Gcaud2982.t1

>Gcaud2982.t1 ID=Gcaud2982.t1|Name=Gcaud2982.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MLYFGGISHHGIQHVTTPFITRAMPKALVTVLPFVPSVAARAGASALRRR
VAPLLGADTNASDAAAKTALFASLRKLDACFENELQLYFFGTAGPTAADF
GVFAALKGLLHPIPEISAELKGGYPDCLRNASGLSRLQAFFHRMDEQFYR
GKIDWSSVPLKL*
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mRNA from alignment at NODE_1449_length_10591_cov_14.789238:9345..9833-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2982.t1 ID=Gcaud2982.t1|Name=Gcaud2982.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_1449_length_10591_cov_14.789238:9345..9833- (Gracilaria caudata M_176_S67 male)
ATGCTGTACTTTGGCGGAATCTCTCACCACGGCATTCAGCATGTCACCAC
ACCGTTCATTACGCGCGCGATGCCCAAAGCGCTGGTCACCGTGTTGCCGT
TTGTGCCCAGCGTGGCCGCCAGAGCGGGTGCAAGCGCGCTGCGTCGACGC
GTCGCGCCGTTGTTAGGCGCCGATACCAATGCGAGCGACGCCGCCGCGAA
GACCGCGTTGTTCGCGTCGCTGCGCAAGTTGGACGCGTGCTTTGAAAATG
AGCTGCAGCTGTACTTTTTCGGCACCGCCGGTCCCACCGCCGCGGACTTT
GGTGTGTTTGCGGCGCTCAAGGGACTGTTGCACCCCATTCCGGAGATCTC
TGCGGAATTGAAAGGCGGCTATCCCGACTGTCTGCGTAACGCCAGTGGGT
TAAGTCGATTGCAGGCGTTTTTCCATCGCATGGACGAGCAGTTTTATCGC
GGCAAGATTGATTGGTCTTCGGTTCCGCTCAAGTTGTGA
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Coding sequence (CDS) from alignment at NODE_1449_length_10591_cov_14.789238:9345..9833-

>Gcaud2982.t1 ID=Gcaud2982.t1|Name=Gcaud2982.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=489bp|location=Sequence derived from alignment at NODE_1449_length_10591_cov_14.789238:9345..9833- (Gracilaria caudata M_176_S67 male)
ATGCTGTACTTTGGCGGAATCTCTCACCACGGCATTCAGCATGTCACCAC
ACCGTTCATTACGCGCGCGATGCCCAAAGCGCTGGTCACCGTGTTGCCGT
TTGTGCCCAGCGTGGCCGCCAGAGCGGGTGCAAGCGCGCTGCGTCGACGC
GTCGCGCCGTTGTTAGGCGCCGATACCAATGCGAGCGACGCCGCCGCGAA
GACCGCGTTGTTCGCGTCGCTGCGCAAGTTGGACGCGTGCTTTGAAAATG
AGCTGCAGCTGTACTTTTTCGGCACCGCCGGTCCCACCGCCGCGGACTTT
GGTGTGTTTGCGGCGCTCAAGGGACTGTTGCACCCCATTCCGGAGATCTC
TGCGGAATTGAAAGGCGGCTATCCCGACTGTCTGCGTAACGCCAGTGGGT
TAAGTCGATTGCAGGCGTTTTTCCATCGCATGGACGAGCAGTTTTATCGC
GGCAAGATTGATTGGTCTTCGGTTCCGCTCAAGTTGTGA
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