Gcaud2244.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2244.t2
Unique NameGcaud2244.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length591
Homology
BLAST of Gcaud2244.t2 vs. uniprot
Match: A0A2V3IIY1_9FLOR (Box C/D snoRNA protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIY1_9FLOR)

HSP 1 Score: 432 bits (1110), Expect = 5.860e-140
Identity = 292/665 (43.91%), Postives = 395/665 (59.40%), Query Frame = 0
Query:    1 LEEAKRKKDEASRNRVKN-FYNPYAPKKVPDPIPKHKQRILGREAAKRGIDLRFMPNVFYRHRMNTSRIRPVDYSKTEEKDGATIFEGFNRQFDKIMVWRVDVQFSGTDGGTRLVEIHDLDEEANMNDVLERAVQSLHIRKEPRLNGSVDPYLHYSGLSGNQLNAYIKNEISLGARRAEPSSLPDFPKYKRRKIVDGRVDLGDLELDTRGFILVNTDKTLRESLYSALVVEHPILYVAPKGSQEDKELEQATKSLFDKPEPEADDSVRPPA---SHVVRDEGQDKNDIEEEDADLNETHHSENQV----KSGSAEAHDGKQLEVNPGPENFDRIDDQKGERDFSAVPQSDDKTTEEPESRGVKRKAMVESSDDDESDLSELERNITKRFTPQKKNGGKTGWTRDGKVRIANGKRSASSAVPMPIPRFRSVLPPIHYG----RDETI--------RGERKEGKDHHNEVTGATSEAEESEDENDADEELSGNESTGQHAD-------------KGESE---------------------------QHVDAQI----AVGQKRSLKKSMQEKRRPAKRQRFGDLESIE---------DKQDEKRDGSGAGEKDD--EDGDSKPRSRRQSGVESPPLPFLKVDSVLLDTRIPRRKKIADSNGRETLAC 590
            LEEAKRK D+  RNR+ N    P A K V DPIP++KQ I+G EAA+RGIDLRFMP  F+RHR NTS ++PVDY   E + GAT      R F++IMVWRVD+ F G  GGTRLV+IHDLDE+ NM D+LERAVQ L +RKEPRLNG VD YL Y+G+SG+ LNAY++N+  LG RRAEPS LPD P +KRRK+ DG  D   +++DTRGFI ++TD TLRESL+ A+VVE+PIL+VAPKGS +D  L+ ATKSLF KPE E DD+   PA   + V  DEGQ        D D               ++GSA+   G+    NP   N +       + +  A P ++     + + RG KRKA  + S D ES++SELE+NI +R TP+K NGGKTG++ +GK+++   K+   S V   +P+FRSVLPP+ Y     RDE            +R++G D     +G+ +++ E E  N  D  ++G +S   + D              G+ +                           + V  ++    + GQKR+   + Q++ RP KR+RF DLE++E         +++DE+   S   E D+  EDGD++ +++R   V SPP PFL+VDSVLL+TRIPRRKK+ D NGRE L C
Sbjct:   72 LEEAKRKHDDVKRNRITNKVARPAAKKNVFDPIPRYKQVIMGEEAAQRGIDLRFMPPHFFRHRNNTSHVKPVDYCG-EGQAGAT-----RRPFERIMVWRVDIHFCGPGGGTRLVQIHDLDEDVNMADLLERAVQKLEMRKEPRLNGDVDQYLLYAGMSGSNLNAYLRNDSDLGRRRAEPSILPDLPSHKRRKLEDGSADPTAMDVDTRGFIPIDTDNTLRESLHGAMVVEYPILFVAPKGSSDDDHLQSATKSLFMKPEREVDDTFPCPALPTADVQADEGQ-------RDCDXXXXXXXXXXXXXXPQAGSAQNTGGRSAVHNPSHSNSN-----SEKVEIEAKPVTNQSMPSDSQVRGQKRKA--DDSGDSESEMSELEKNIVRRLTPRKMNGGKTGYSCEGKLKVVEPKKL--SPVAFSMPKFRSVLPPVGYDKGDVRDEKDVQAGWKDQEADRRKGADFEESESGSENDSAEEEGSN-VDNGVAGEDSEQMNEDFDXXXXXXXXXXXXGDEKDXXXXXXXXXXXXXXXXXXXXXXXXEYEAVSKKLGEDGSPGQKRARHSATQDRPRPLKRRRFEDLEAVELRGEESVAEEREDEQVKASERDEVDEIAEDGDNEKKTQRAPAVSSPPPPFLQVDSVLLETRIPRRKKMPDQNGREPLIC 713          
BLAST of Gcaud2244.t2 vs. uniprot
Match: A0A2V3IJ14_9FLOR (Box C/D snoRNA protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ14_9FLOR)

HSP 1 Score: 370 bits (951), Expect = 1.070e-117
Identity = 219/450 (48.67%), Postives = 292/450 (64.89%), Query Frame = 0
Query:    1 LEEAKRKKDEASRNRVKN-FYNPYAPKKVPDPIPKHKQRILGREAAKRGIDLRFMPNVFYRHRMNTSRIRPVDYSKTEEKDGATIFEGFNRQFDKIMVWRVDVQFSGTDGGTRLVEIHDLDEEANMNDVLERAVQSLHIRKEPRLNGSVDPYLHYSGLSGNQLNAYIKNEISLGARRAEPSSLPDFPKYKRRKIVDGRVDLGDLELDTRGFILVNTDKTLRESLYSALVVEHPILYVAPKGSQEDKELEQATKSLFDKPEPEADDSVRPPASHVVRDEGQ-DKNDIEEEDADLNETHHSENQV-----KSGSAEAHDGKQLEVNPGPENFDRIDDQKGERDFSAVPQSDDKTTE--EPESRGVKRKAMVESSDDDESDLSELERNITKRFTPQKKNGGKTGWTRDGKVRIANGKRSASSAVPMPIPRFRSVLPPIHYGRDETIRGERKEG 441
            LEEAKR+K+ A RNR+ N F +      + DPIP++KQRI+G+EAAKRGIDLRFMP+VF RH+ NTS ++PV+YS  +++D A       R F+KIMVWRVD+ F G +GGTRLV+IH LDEE NM DVLERA+ +L IRKEPRLNG  D YL Y+G+SG++L AYI+N+  LG R  EPS LPD P++KRRK+ +   D   ++LDTRGFI ++TDKTLRESL  ALVVE+PIL+VAPKGS +D+ L+ ATKSLF KPEPE DD+  PP       +      D E     + +T HS+  +     +SG   A D         P     I  QK   +   V   +  TT+  + ES+G +++   E S D ++  SELE N+T   TP+K NGGKTG+TRDGK+R++  ++   S +P+ +P FRS LPP  +  + T   E  +G
Sbjct:   72 LEEAKRQKENAKRNRINNKFIHLANMSNLFDPIPRYKQRIMGQEAAKRGIDLRFMPSVFCRHKNNTSHVKPVNYSPQQQRDTA------RRPFEKIMVWRVDLHFCGPNGGTRLVQIHHLDEEVNMADVLERAIHTLEIRKEPRLNGDTDQYLLYAGMSGSKLRAYIRNDTDLGRRETEPSILPDLPRHKRRKLNNTSADPNSMDLDTRGFIPIDTDKTLRESLRGALVVEYPILFVAPKGSADDQHLQNATKSLFAKPEPEVDDTFPPPLPSTTAVKATCGPTDGEHPGIRITDTTHSQTALAGSTYRSGQKSAADS--------PRGSGGIA-QKASGEARRVTGPEVLTTDAVDSESQGREQQRKAEESGDSDTFRSELEANLTGHLTPRKTNGGKTGYTRDGKLRVSESQKP--SPIPLSLPSFRSALPPGDHDDEGTKTQEDVDG 504          
The following BLAST results are available for this feature:
BLAST of Gcaud2244.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IIY1_9FLOR5.860e-14043.91Box C/D snoRNA protein 1 n=1 Tax=Gracilariopsis ch... [more]
A0A2V3IJ14_9FLOR1.070e-11748.67Box C/D snoRNA protein 1 n=1 Tax=Gracilariopsis ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..486
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..590
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 453..468
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..309
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 509..550
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 430..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 569..583
NoneNo IPR availablePANTHERPTHR13483:SF3BOX C/D SNORNA PROTEIN 1coord: 1..332
NoneNo IPR availablePANTHERPTHR13483UNCHARACTERIZEDcoord: 1..332

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1427_length_10755_cov_3.958177contigNODE_1427_length_10755_cov_3.958177:5712..7484 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2244.t2Gcaud2244.t2Gracilaria caudata M_176_S67 malemRNANODE_1427_length_10755_cov_3.958177 5712..7484 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2244.t2 ID=Gcaud2244.t2|Name=Gcaud2244.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=591bp
LEEAKRKKDEASRNRVKNFYNPYAPKKVPDPIPKHKQRILGREAAKRGID
LRFMPNVFYRHRMNTSRIRPVDYSKTEEKDGATIFEGFNRQFDKIMVWRV
DVQFSGTDGGTRLVEIHDLDEEANMNDVLERAVQSLHIRKEPRLNGSVDP
YLHYSGLSGNQLNAYIKNEISLGARRAEPSSLPDFPKYKRRKIVDGRVDL
GDLELDTRGFILVNTDKTLRESLYSALVVEHPILYVAPKGSQEDKELEQA
TKSLFDKPEPEADDSVRPPASHVVRDEGQDKNDIEEEDADLNETHHSENQ
VKSGSAEAHDGKQLEVNPGPENFDRIDDQKGERDFSAVPQSDDKTTEEPE
SRGVKRKAMVESSDDDESDLSELERNITKRFTPQKKNGGKTGWTRDGKVR
IANGKRSASSAVPMPIPRFRSVLPPIHYGRDETIRGERKEGKDHHNEVTG
ATSEAEESEDENDADEELSGNESTGQHADKGESEQHVDAQIAVGQKRSLK
KSMQEKRRPAKRQRFGDLESIEDKQDEKRDGSGAGEKDDEDGDSKPRSRR
QSGVESPPLPFLKVDSVLLDTRIPRRKKIADSNGRETLAC*
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