Gcaud8493.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8493.t1
Unique NameGcaud8493.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1032_length_14828_cov_4.591708contigNODE_1032_length_14828_cov_4.591708:1198..2053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8493Gcaud8493Gracilaria caudata M_176_S67 malegeneNODE_1032_length_14828_cov_4.591708 1198..2053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8493.t1Gcaud8493.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1032_length_14828_cov_4.591708 1198..2053 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8493.t1.start1Gcaud8493.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1032_length_14828_cov_4.591708 1198..1200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8493.t1.CDS1Gcaud8493.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1032_length_14828_cov_4.591708 1198..1429 +
Gcaud8493.t1.CDS2Gcaud8493.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1032_length_14828_cov_4.591708 1564..1721 +
Gcaud8493.t1.CDS3Gcaud8493.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1032_length_14828_cov_4.591708 1881..1967 +
Gcaud8493.t1.CDS4Gcaud8493.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_1032_length_14828_cov_4.591708 2036..2053 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8493.t1.exon1Gcaud8493.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1032_length_14828_cov_4.591708 1198..1429 +
Gcaud8493.t1.exon2Gcaud8493.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1032_length_14828_cov_4.591708 1564..1721 +
Gcaud8493.t1.exon3Gcaud8493.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1032_length_14828_cov_4.591708 1881..1967 +
Gcaud8493.t1.exon4Gcaud8493.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_1032_length_14828_cov_4.591708 2036..2053 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8493.t1.intron1Gcaud8493.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1032_length_14828_cov_4.591708 1430..1563 +
Gcaud8493.t1.intron2Gcaud8493.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1032_length_14828_cov_4.591708 1722..1880 +
Gcaud8493.t1.intron3Gcaud8493.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_1032_length_14828_cov_4.591708 1968..2035 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8493.t1.stop1Gcaud8493.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1032_length_14828_cov_4.591708 2051..2053 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8493.t1 ID=Gcaud8493.t1|Name=Gcaud8493.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=165bp
MKSPIFPRYGCKSSHDCDEGEYCGWDPVAGLTTGRCITSRYFPTQKRSIL
QQPITSIPPLLGSGLTGDRCFSHSDCRDQGEMCTTVLFSPSSSFPNRFQT
EQDAVLEPICISSNLTHTSTAVLPVSNNSENDFIGGILSLVIVSQLHNII
QTLIHSVAGINPSA*
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spliced messenger RNA

>Gcaud8493.t1 ID=Gcaud8493.t1|Name=Gcaud8493.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=495bp|location=Sequence derived from alignment at NODE_1032_length_14828_cov_4.591708:1198..2053+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCCCCAATCTTCCCCAGATACGGCTGCAAGTCATCGCACGACTG
CGACGAAGGTGAGTATTGTGGTTGGGATCCCGTGGCCGGCCTCACGACTG
GACGTTGCATAACCTCCCGATACTTTCCGACTCAGAAACGTTCAATCTTG
CAACAACCGATTACGTCCATACCGCCATTGCTCGGCTCGGGACTGACTGG
CGACCGATGCTTTTCGCACAGCGACTGTCGTGATCAGGGCGAGATGTGTA
CGACTGTACTCTTTTCCCCGTCATCGTCGTTTCCAAACAGATTCCAGACC
GAACAGGACGCAGTGCTTGAGCCGATATGCATCTCATCCAATCTCACACA
CACCTCCACGGCTGTCCTTCCTGTGTCGAACAATTCCGAAAATGACTTCA
TCGGTGGAATTCTTTCACTCGTTATCGTCTCTCAACTTCACAACATAATT
CAAACTCTCATACACTCAGTGGCTGGAATTAATCCGTCTGCATGA
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protein sequence of Gcaud8493.t1

>Gcaud8493.t1 ID=Gcaud8493.t1|Name=Gcaud8493.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=165bp
MKSPIFPRYGCKSSHDCDEGEYCGWDPVAGLTTGRCITSRYFPTQKRSIL
QQPITSIPPLLGSGLTGDRCFSHSDCRDQGEMCTTVLFSPSSSFPNRFQT
EQDAVLEPICISSNLTHTSTAVLPVSNNSENDFIGGILSLVIVSQLHNII
QTLIHSVAGINPSA*
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mRNA from alignment at NODE_1032_length_14828_cov_4.591708:1198..2053+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8493.t1 ID=Gcaud8493.t1|Name=Gcaud8493.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=856bp|location=Sequence derived from alignment at NODE_1032_length_14828_cov_4.591708:1198..2053+ (Gracilaria caudata M_176_S67 male)
ATGAAATCCCCAATCTTCCCCAGATACGGCTGCAAGTCATCGCACGACTG
CGACGAAGGTGAGTATTGTGGTTGGGATCCCGTGGCCGGCCTCACGACTG
GACGTTGCATAACCTCCCGATACTTTCCGACTCAGAAACGTTCAATCTTG
CAACAACCGATTACGTCCATACCGCCATTGCTCGGCTCGGGACTGACTGG
CGACCGATGCTTTTCGCACAGCGACTGTCGTGGTACGCGAAGTGTTTGTC
GAAAGCTTTTTTTAACACCGAGGTGTACAACCTCACAGCATGTGAGTATT
CGCAGAGCCCTTGTGTCTGTACTCCCATCGATTTCATTCCATGCTTCACA
ACATCGGATTGTACAGATCAGGGCGAGATGTGTACGACTGTACTCTTTTC
CCCGTCATCGTCGTTTCCAAACAGATTCCAGACCGAACAGGACGCAGTGC
TTGAGCCGATATGCATCTCATCCAATCTCACACACACCTCCACGGCTGTC
CTTCCTGTGTCGAACAATTCCGAAGTACGTCAGATTCGTGATCTTCCAAG
AGCACAACTTCAACCTCGAAGTTTCGAAGAGAGCGGAAACCTGCAACCTG
CCAGGCGCTTATCGGCAGACGTACCGCCCTTCTCGGTGCCTGAATTATCA
TTCTTCAATGCCTTCTCAACTGACGATCTTCAGAATGACTTCATCGGTGG
AATTCTTTCACTCGTTATCGTCTCTCAACTTCACAACATAATTCAAACTC
TCATACACTCAGTGGCTGGAGTCAGTGAAGATGCATACTCCGCGTACATC
ATTTTCTCCCGACTGAGTTCTTTTCGTTATGTTTCTAGATTAATCCGTCT
GCATGA
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Coding sequence (CDS) from alignment at NODE_1032_length_14828_cov_4.591708:1198..2053+

>Gcaud8493.t1 ID=Gcaud8493.t1|Name=Gcaud8493.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=495bp|location=Sequence derived from alignment at NODE_1032_length_14828_cov_4.591708:1198..2053+ (Gracilaria caudata M_176_S67 male)
ATGAAATCCCCAATCTTCCCCAGATACGGCTGCAAGTCATCGCACGACTG
CGACGAAGGTGAGTATTGTGGTTGGGATCCCGTGGCCGGCCTCACGACTG
GACGTTGCATAACCTCCCGATACTTTCCGACTCAGAAACGTTCAATCTTG
CAACAACCGATTACGTCCATACCGCCATTGCTCGGCTCGGGACTGACTGG
CGACCGATGCTTTTCGCACAGCGACTGTCGTGATCAGGGCGAGATGTGTA
CGACTGTACTCTTTTCCCCGTCATCGTCGTTTCCAAACAGATTCCAGACC
GAACAGGACGCAGTGCTTGAGCCGATATGCATCTCATCCAATCTCACACA
CACCTCCACGGCTGTCCTTCCTGTGTCGAACAATTCCGAAAATGACTTCA
TCGGTGGAATTCTTTCACTCGTTATCGTCTCTCAACTTCACAACATAATT
CAAACTCTCATACACTCAGTGGCTGGAATTAATCCGTCTGCATGA
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