Gcaud1024.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1024.t1
Unique NameGcaud1024.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_137_length_44725_cov_4.465632contigNODE_137_length_44725_cov_4.465632:25693..26373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1024Gcaud1024Gracilaria caudata M_176_S67 malegeneNODE_137_length_44725_cov_4.465632 25693..26373 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1024.t1.stop1Gcaud1024.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_137_length_44725_cov_4.465632 25693..25695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1024.t1.CDS1Gcaud1024.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_137_length_44725_cov_4.465632 25693..26373 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1024.t1.exon1Gcaud1024.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_137_length_44725_cov_4.465632 25693..26373 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1024.t1.start1Gcaud1024.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_137_length_44725_cov_4.465632 26371..26373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1024.t1Gcaud1024.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_137_length_44725_cov_4.465632 25693..26373 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1024.t1 ID=Gcaud1024.t1|Name=Gcaud1024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=227bp
MMTTPLSLFSLCLAFILLAHASVVPDLKNSRAYVGVAHIDADKTSHGEQE
YGLKGMHGSTLDLRKMESERRRRLKVSIRDEDDGEDDFGDDDRINKVSVR
DEDDGGDDYEDDDRISKVSVRDEDDGWDDYGDDDRISKVSVRDEDDGEDD
YGDDDRINKVSVRDEDDGGDDYGDDDRINKVSVRDEDDDGDDYGDDDRIT
KVSVRDDYGDDYGDDYGDDDRIKKKA*
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spliced messenger RNA

>Gcaud1024.t1 ID=Gcaud1024.t1|Name=Gcaud1024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:25693..26373- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGACTACTCCTCTTTCACTTTTTTCATTGTGTCTTGCTTTCATATT
GCTTGCCCATGCCTCTGTTGTGCCGGACTTGAAAAATTCCAGAGCGTATG
TCGGAGTTGCGCACATAGACGCGGACAAGACTTCACATGGTGAACAAGAA
TATGGGCTGAAGGGCATGCATGGCTCAACTTTGGATTTGCGTAAGATGGA
ATCGGAGAGGAGGAGGAGACTTAAAGTGAGTATTCGGGATGAGGATGACG
GTGAGGACGACTTCGGAGACGATGATCGTATCAACAAAGTGAGTGTTCGA
GATGAAGATGATGGTGGGGACGACTACGAGGATGATGACCGCATCTCTAA
AGTGAGTGTTCGAGATGAGGATGACGGTTGGGACGACTATGGGGATGATG
ACCGCATCTCCAAAGTGAGTGTTAGAGATGAGGATGACGGAGAGGACGAC
TATGGAGACGATGATCGTATCAACAAAGTGAGTGTTCGAGATGAGGATGA
TGGTGGGGACGACTATGGAGACGATGATCGTATCAACAAAGTGAGTGTTC
GCGATGAGGATGATGATGGGGACGACTATGGAGACGATGATCGTATCACT
AAAGTGAGTGTTCGAGATGACTACGGTGATGATTACGGCGATGACTACGG
GGATGATGACCGCATTAAAAAGAAGGCGTAG
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protein sequence of Gcaud1024.t1

>Gcaud1024.t1 ID=Gcaud1024.t1|Name=Gcaud1024.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
MMTTPLSLFSLCLAFILLAHASVVPDLKNSRAYVGVAHIDADKTSHGEQE
YGLKGMHGSTLDLRKMESERRRRLKVSIRDEDDGEDDFGDDDRINKVSVR
DEDDGGDDYEDDDRISKVSVRDEDDGWDDYGDDDRISKVSVRDEDDGEDD
YGDDDRINKVSVRDEDDGGDDYGDDDRINKVSVRDEDDDGDDYGDDDRIT
KVSVRDDYGDDYGDDYGDDDRIKKKA*
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mRNA from alignment at NODE_137_length_44725_cov_4.465632:25693..26373-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1024.t1 ID=Gcaud1024.t1|Name=Gcaud1024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:25693..26373- (Gracilaria caudata M_176_S67 male)
ATGATGACTACTCCTCTTTCACTTTTTTCATTGTGTCTTGCTTTCATATT
GCTTGCCCATGCCTCTGTTGTGCCGGACTTGAAAAATTCCAGAGCGTATG
TCGGAGTTGCGCACATAGACGCGGACAAGACTTCACATGGTGAACAAGAA
TATGGGCTGAAGGGCATGCATGGCTCAACTTTGGATTTGCGTAAGATGGA
ATCGGAGAGGAGGAGGAGACTTAAAGTGAGTATTCGGGATGAGGATGACG
GTGAGGACGACTTCGGAGACGATGATCGTATCAACAAAGTGAGTGTTCGA
GATGAAGATGATGGTGGGGACGACTACGAGGATGATGACCGCATCTCTAA
AGTGAGTGTTCGAGATGAGGATGACGGTTGGGACGACTATGGGGATGATG
ACCGCATCTCCAAAGTGAGTGTTAGAGATGAGGATGACGGAGAGGACGAC
TATGGAGACGATGATCGTATCAACAAAGTGAGTGTTCGAGATGAGGATGA
TGGTGGGGACGACTATGGAGACGATGATCGTATCAACAAAGTGAGTGTTC
GCGATGAGGATGATGATGGGGACGACTATGGAGACGATGATCGTATCACT
AAAGTGAGTGTTCGAGATGACTACGGTGATGATTACGGCGATGACTACGG
GGATGATGACCGCATTAAAAAGAAGGCGTAG
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Coding sequence (CDS) from alignment at NODE_137_length_44725_cov_4.465632:25693..26373-

>Gcaud1024.t1 ID=Gcaud1024.t1|Name=Gcaud1024.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=681bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:25693..26373- (Gracilaria caudata M_176_S67 male)
ATGATGACTACTCCTCTTTCACTTTTTTCATTGTGTCTTGCTTTCATATT
GCTTGCCCATGCCTCTGTTGTGCCGGACTTGAAAAATTCCAGAGCGTATG
TCGGAGTTGCGCACATAGACGCGGACAAGACTTCACATGGTGAACAAGAA
TATGGGCTGAAGGGCATGCATGGCTCAACTTTGGATTTGCGTAAGATGGA
ATCGGAGAGGAGGAGGAGACTTAAAGTGAGTATTCGGGATGAGGATGACG
GTGAGGACGACTTCGGAGACGATGATCGTATCAACAAAGTGAGTGTTCGA
GATGAAGATGATGGTGGGGACGACTACGAGGATGATGACCGCATCTCTAA
AGTGAGTGTTCGAGATGAGGATGACGGTTGGGACGACTATGGGGATGATG
ACCGCATCTCCAAAGTGAGTGTTAGAGATGAGGATGACGGAGAGGACGAC
TATGGAGACGATGATCGTATCAACAAAGTGAGTGTTCGAGATGAGGATGA
TGGTGGGGACGACTATGGAGACGATGATCGTATCAACAAAGTGAGTGTTC
GCGATGAGGATGATGATGGGGACGACTATGGAGACGATGATCGTATCACT
AAAGTGAGTGTTCGAGATGACTACGGTGATGATTACGGCGATGACTACGG
GGATGATGACCGCATTAAAAAGAAGGCGTAG
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