Gcaud1018.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1018.t1
Unique Name	Gcaud1018.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	438

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_137_length_44725_cov_4.465632	contig	NODE_137_length_44725_cov_4.465632:7976..9289 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	926554.KI912633_gene4060
PFAMs	Kelch_1,Malectin,NPCBM
Max annot lvl	1297\|Deinococcus-Thermus
Evalue	4.53e-40
EggNOG OGs	COG1874@1\|root,COG3055@1\|root,COG1874@2\|Bacteria,COG3055@2\|Bacteria,1WM1P@1297\|Deinococcus-Thermus
Description	Kelch
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1018	Gcaud1018	Gracilaria caudata M_176_S67 male	gene	NODE_137_length_44725_cov_4.465632 7976..9289 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1018.t1.start1	Gcaud1018.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_137_length_44725_cov_4.465632 7976..7978 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1018.t1.CDS1	Gcaud1018.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_137_length_44725_cov_4.465632 7976..9289 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1018.t1.exon1	Gcaud1018.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_137_length_44725_cov_4.465632 7976..9289 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1018.t1.stop1	Gcaud1018.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_137_length_44725_cov_4.465632 9287..9289 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1018.t1	Gcaud1018.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_137_length_44725_cov_4.465632 7976..9289 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_137_length_44725_cov_4.465632:7976..9289+
coding sequence from alignment at NODE_137_length_44725_cov_4.465632:7976..9289+

mRNA sequence

>Gcaud1018.t1 ID=Gcaud1018.t1|Name=Gcaud1018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp
MGAARAQGADDGAVADAAPEPAKWTPEPAKWTPEPVGATPEPAKWTPEPA
KWTPEPVAATPEPAKWTPEPVGATPEPAKWTPEPAKWTPEPAAATPEPAK
WTPEPVAVEEMASEQAASDVRFSSDEWQPLAKYPLRLLESAGGMLHAKSG
KKLLMVAGGYIDNSDLLTTKQAYVLDVKKKDAEWERVADMPRHLTHCAQT
IVGDRMYLCGGFLAKAPGRSVGQCFVFSYSDNEWVTLPKLPLAVGGGGMV
YVSQRNSLLFSSGMIREQDSWDGEDSTHSYMLKLDDLEGGWQRVADIPIA
RNHMSALTVRGRYLFIGGQRRADEDHGNQVAVHEYNVGADEWIERAQLPL
PLGHIAASTLRYGGGALVVAGITNGRKPVGDVLFYDLMADRWRRLGRFPR
SVQSAVCGVADGTLVCTTGRGEPGDSDETYARALSRS*

spliced messenger RNA

>Gcaud1018.t1 ID=Gcaud1018.t1|Name=Gcaud1018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:7976..9289+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCTGCTCGCGCGCAGGGAGCTGACGACGGCGCCGTGGCCGATGC
TGCACCTGAACCTGCGAAATGGACACCCGAGCCAGCGAAGTGGACGCCCG
AGCCGGTGGGAGCCACACCGGAGCCGGCAAAATGGACACCCGAGCCCGCG
AAGTGGACACCTGAGCCCGTGGCCGCCACACCCGAGCCTGCAAAGTGGAC
GCCCGAGCCGGTGGGCGCCACACCGGAGCCGGCAAAGTGGACACCCGAGC
CTGCGAAATGGACACCTGAGCCCGCGGCTGCCACACCCGAGCCGGCAAAG
TGGACGCCCGAGCCAGTAGCCGTGGAGGAGATGGCGTCTGAGCAGGCAGC
GTCCGACGTGCGCTTCAGCAGCGACGAGTGGCAGCCGCTGGCAAAGTACC
CTCTGCGCTTACTGGAGTCGGCCGGCGGCATGTTGCACGCCAAAAGCGGC
AAGAAACTGCTCATGGTGGCGGGCGGGTACATTGACAACAGCGATCTGCT
GACCACCAAACAGGCGTACGTTCTGGACGTGAAGAAGAAGGACGCGGAGT
GGGAGCGCGTGGCAGACATGCCGCGCCACCTGACGCACTGCGCGCAGACG
ATCGTTGGCGACCGCATGTACCTGTGCGGCGGCTTCCTGGCAAAGGCGCC
GGGACGCAGCGTGGGGCAGTGCTTTGTGTTTTCGTACTCGGACAACGAGT
GGGTGACGCTGCCGAAGCTGCCGCTGGCCGTGGGCGGCGGCGGCATGGTG
TATGTGTCGCAGCGCAACTCGTTGCTATTCTCGTCGGGCATGATTCGCGA
GCAGGACTCGTGGGACGGCGAGGACTCGACGCACAGTTACATGCTCAAAC
TGGACGACCTGGAAGGCGGCTGGCAACGCGTGGCGGACATCCCCATTGCG
CGCAACCACATGTCGGCGCTGACGGTGCGCGGACGCTACCTGTTTATCGG
CGGGCAGCGGCGCGCCGACGAGGATCACGGCAACCAGGTGGCCGTGCACG
AGTACAACGTGGGCGCGGACGAGTGGATCGAGCGCGCGCAGCTGCCGCTG
CCGCTCGGACACATCGCGGCCAGCACGCTGCGCTACGGCGGCGGCGCGCT
GGTGGTGGCGGGCATCACAAACGGGCGCAAGCCGGTGGGCGACGTGCTGT
TCTACGACTTGATGGCGGACCGCTGGCGGCGTCTCGGGCGCTTCCCGCGC
AGCGTGCAGAGCGCGGTGTGCGGCGTGGCGGACGGCACGCTGGTGTGCAC
CACGGGACGCGGCGAGCCCGGCGACTCGGACGAGACGTACGCGCGCGCGT
TGTCGCGCTCATAA

protein sequence of Gcaud1018.t1

>Gcaud1018.t1 ID=Gcaud1018.t1|Name=Gcaud1018.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=438bp
MGAARAQGADDGAVADAAPEPAKWTPEPAKWTPEPVGATPEPAKWTPEPA
KWTPEPVAATPEPAKWTPEPVGATPEPAKWTPEPAKWTPEPAAATPEPAK
WTPEPVAVEEMASEQAASDVRFSSDEWQPLAKYPLRLLESAGGMLHAKSG
KKLLMVAGGYIDNSDLLTTKQAYVLDVKKKDAEWERVADMPRHLTHCAQT
IVGDRMYLCGGFLAKAPGRSVGQCFVFSYSDNEWVTLPKLPLAVGGGGMV
YVSQRNSLLFSSGMIREQDSWDGEDSTHSYMLKLDDLEGGWQRVADIPIA
RNHMSALTVRGRYLFIGGQRRADEDHGNQVAVHEYNVGADEWIERAQLPL
PLGHIAASTLRYGGGALVVAGITNGRKPVGDVLFYDLMADRWRRLGRFPR
SVQSAVCGVADGTLVCTTGRGEPGDSDETYARALSRS*

mRNA from alignment at NODE_137_length_44725_cov_4.465632:7976..9289+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1018.t1 ID=Gcaud1018.t1|Name=Gcaud1018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:7976..9289+ (Gracilaria caudata M_176_S67 male)
ATGGGTGCTGCTCGCGCGCAGGGAGCTGACGACGGCGCCGTGGCCGATGC
TGCACCTGAACCTGCGAAATGGACACCCGAGCCAGCGAAGTGGACGCCCG
AGCCGGTGGGAGCCACACCGGAGCCGGCAAAATGGACACCCGAGCCCGCG
AAGTGGACACCTGAGCCCGTGGCCGCCACACCCGAGCCTGCAAAGTGGAC
GCCCGAGCCGGTGGGCGCCACACCGGAGCCGGCAAAGTGGACACCCGAGC
CTGCGAAATGGACACCTGAGCCCGCGGCTGCCACACCCGAGCCGGCAAAG
TGGACGCCCGAGCCAGTAGCCGTGGAGGAGATGGCGTCTGAGCAGGCAGC
GTCCGACGTGCGCTTCAGCAGCGACGAGTGGCAGCCGCTGGCAAAGTACC
CTCTGCGCTTACTGGAGTCGGCCGGCGGCATGTTGCACGCCAAAAGCGGC
AAGAAACTGCTCATGGTGGCGGGCGGGTACATTGACAACAGCGATCTGCT
GACCACCAAACAGGCGTACGTTCTGGACGTGAAGAAGAAGGACGCGGAGT
GGGAGCGCGTGGCAGACATGCCGCGCCACCTGACGCACTGCGCGCAGACG
ATCGTTGGCGACCGCATGTACCTGTGCGGCGGCTTCCTGGCAAAGGCGCC
GGGACGCAGCGTGGGGCAGTGCTTTGTGTTTTCGTACTCGGACAACGAGT
GGGTGACGCTGCCGAAGCTGCCGCTGGCCGTGGGCGGCGGCGGCATGGTG
TATGTGTCGCAGCGCAACTCGTTGCTATTCTCGTCGGGCATGATTCGCGA
GCAGGACTCGTGGGACGGCGAGGACTCGACGCACAGTTACATGCTCAAAC
TGGACGACCTGGAAGGCGGCTGGCAACGCGTGGCGGACATCCCCATTGCG
CGCAACCACATGTCGGCGCTGACGGTGCGCGGACGCTACCTGTTTATCGG
CGGGCAGCGGCGCGCCGACGAGGATCACGGCAACCAGGTGGCCGTGCACG
AGTACAACGTGGGCGCGGACGAGTGGATCGAGCGCGCGCAGCTGCCGCTG
CCGCTCGGACACATCGCGGCCAGCACGCTGCGCTACGGCGGCGGCGCGCT
GGTGGTGGCGGGCATCACAAACGGGCGCAAGCCGGTGGGCGACGTGCTGT
TCTACGACTTGATGGCGGACCGCTGGCGGCGTCTCGGGCGCTTCCCGCGC
AGCGTGCAGAGCGCGGTGTGCGGCGTGGCGGACGGCACGCTGGTGTGCAC
CACGGGACGCGGCGAGCCCGGCGACTCGGACGAGACGTACGCGCGCGCGT
TGTCGCGCTCATAA

Coding sequence (CDS) from alignment at NODE_137_length_44725_cov_4.465632:7976..9289+

>Gcaud1018.t1 ID=Gcaud1018.t1|Name=Gcaud1018.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1314bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:7976..9289+ (Gracilaria caudata M_176_S67 male)
ATGGGTGCTGCTCGCGCGCAGGGAGCTGACGACGGCGCCGTGGCCGATGC
TGCACCTGAACCTGCGAAATGGACACCCGAGCCAGCGAAGTGGACGCCCG
AGCCGGTGGGAGCCACACCGGAGCCGGCAAAATGGACACCCGAGCCCGCG
AAGTGGACACCTGAGCCCGTGGCCGCCACACCCGAGCCTGCAAAGTGGAC
GCCCGAGCCGGTGGGCGCCACACCGGAGCCGGCAAAGTGGACACCCGAGC
CTGCGAAATGGACACCTGAGCCCGCGGCTGCCACACCCGAGCCGGCAAAG
TGGACGCCCGAGCCAGTAGCCGTGGAGGAGATGGCGTCTGAGCAGGCAGC
GTCCGACGTGCGCTTCAGCAGCGACGAGTGGCAGCCGCTGGCAAAGTACC
CTCTGCGCTTACTGGAGTCGGCCGGCGGCATGTTGCACGCCAAAAGCGGC
AAGAAACTGCTCATGGTGGCGGGCGGGTACATTGACAACAGCGATCTGCT
GACCACCAAACAGGCGTACGTTCTGGACGTGAAGAAGAAGGACGCGGAGT
GGGAGCGCGTGGCAGACATGCCGCGCCACCTGACGCACTGCGCGCAGACG
ATCGTTGGCGACCGCATGTACCTGTGCGGCGGCTTCCTGGCAAAGGCGCC
GGGACGCAGCGTGGGGCAGTGCTTTGTGTTTTCGTACTCGGACAACGAGT
GGGTGACGCTGCCGAAGCTGCCGCTGGCCGTGGGCGGCGGCGGCATGGTG
TATGTGTCGCAGCGCAACTCGTTGCTATTCTCGTCGGGCATGATTCGCGA
GCAGGACTCGTGGGACGGCGAGGACTCGACGCACAGTTACATGCTCAAAC
TGGACGACCTGGAAGGCGGCTGGCAACGCGTGGCGGACATCCCCATTGCG
CGCAACCACATGTCGGCGCTGACGGTGCGCGGACGCTACCTGTTTATCGG
CGGGCAGCGGCGCGCCGACGAGGATCACGGCAACCAGGTGGCCGTGCACG
AGTACAACGTGGGCGCGGACGAGTGGATCGAGCGCGCGCAGCTGCCGCTG
CCGCTCGGACACATCGCGGCCAGCACGCTGCGCTACGGCGGCGGCGCGCT
GGTGGTGGCGGGCATCACAAACGGGCGCAAGCCGGTGGGCGACGTGCTGT
TCTACGACTTGATGGCGGACCGCTGGCGGCGTCTCGGGCGCTTCCCGCGC
AGCGTGCAGAGCGCGGTGTGCGGCGTGGCGGACGGCACGCTGGTGTGCAC
CACGGGACGCGGCGAGCCCGGCGACTCGGACGAGACGTACGCGCGCGCGT
TGTCGCGCTCATAA