Gcaud2676.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2676.t1
Unique Name	Gcaud2676.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	470

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_136_length_44848_cov_4.574435	contig	NODE_136_length_44848_cov_4.574435:11257..12666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	242159.ABP00687
PFAMs	Ammonium_transp
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03320
KEGG TC	1.A.11
Evalue	8.8e-134
EggNOG OGs	COG0004@1\|root,KOG0682@2759\|Eukaryota,37HQP@33090\|Viridiplantae,34J8I@3041\|Chlorophyta
Description	Ammonium transporter
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2676	Gcaud2676	Gracilaria caudata M_176_S67 male	gene	NODE_136_length_44848_cov_4.574435 11257..12666 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2676.t1.start1	Gcaud2676.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_136_length_44848_cov_4.574435 11257..11259 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2676.t1.CDS1	Gcaud2676.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_136_length_44848_cov_4.574435 11257..12666 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2676.t1.exon1	Gcaud2676.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_136_length_44848_cov_4.574435 11257..12666 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2676.t1.stop1	Gcaud2676.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_136_length_44848_cov_4.574435 12664..12666 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2676.t1	Gcaud2676.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_136_length_44848_cov_4.574435 11257..12666 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_136_length_44848_cov_4.574435:11257..12666+
coding sequence from alignment at NODE_136_length_44848_cov_4.574435:11257..12666+

mRNA sequence

>Gcaud2676.t1 ID=Gcaud2676.t1|Name=Gcaud2676.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=470bp
MQVADYFFLANGQTHMNASKVAADLIDHASAIDTMFVLFSGFLVFLMQCG
FAMLTAGSVHTKNTKNVLLKKVLDACVGAVAYYLFGYAFAYGPGDRASGF
IGAGNFALSSFSGEPFTDFAFFFFQWALAATAATIVSGSLAERTSFYAHI
GYTFFLTAFVYPVVSHWVWGGGFLSTLVGQGMIDFAGSSVVHMVGGFSGL
AGAIIVGPRFGRFNSDRKPMPLPGHSATLATLGTFLLWFGWYGLNPGSSL
KITGGRFDTVQRCAVTTTVAAAVGGLTTLVLKKILYDFFDLLSVLNGILA
GLVSITACCAFVDVWAAAIIGFFGAIIYYATAMLLLDRNIDDPLEAFPVH
GAPGFWGCIAAGVFNRKAAQETAGFTNPGAGLVDGSARLLLTNFLGCLII
VGWVLGLIVPFFFILMEADILRISSEEERIGSDISKRGGVAYPDDAVGVA
ADFAKKELFGHGNGSTGRR*

spliced messenger RNA

>Gcaud2676.t1 ID=Gcaud2676.t1|Name=Gcaud2676.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:11257..12666+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTCGCGGATTATTTCTTCCTGGCGAATGGCCAAACACATATGAA
TGCTTCTAAAGTCGCTGCCGATCTCATAGACCATGCATCCGCTATTGACA
CCATGTTTGTCCTTTTCTCAGGCTTTCTTGTCTTTCTTATGCAATGCGGT
TTCGCTATGCTCACTGCAGGTTCTGTTCATACCAAGAACACGAAGAACGT
TCTTCTGAAGAAGGTTTTGGATGCCTGTGTCGGTGCCGTCGCCTATTACC
TTTTCGGTTATGCTTTTGCCTACGGTCCAGGCGATCGCGCCTCAGGCTTC
ATTGGTGCAGGCAACTTTGCTCTCTCCAGCTTCAGTGGAGAGCCGTTCAC
AGACTTCGCCTTCTTCTTCTTCCAGTGGGCCCTCGCTGCCACGGCTGCCA
CCATTGTTTCTGGTTCTCTCGCCGAACGTACTTCCTTCTATGCCCACATA
GGTTACACTTTTTTCCTCACCGCCTTCGTCTATCCTGTCGTGTCTCACTG
GGTTTGGGGAGGTGGATTCCTTTCCACCCTTGTCGGCCAAGGCATGATCG
ACTTTGCTGGCTCCTCTGTCGTTCATATGGTAGGTGGCTTTTCCGGTTTG
GCCGGTGCCATCATTGTTGGTCCTCGTTTCGGGCGCTTCAACTCTGATCG
CAAGCCCATGCCCTTGCCTGGTCACTCTGCCACTCTCGCTACTCTCGGTA
CCTTCCTCCTATGGTTTGGATGGTACGGTCTCAACCCAGGATCGTCCCTT
AAAATAACCGGCGGTCGCTTCGACACCGTTCAGCGTTGTGCCGTGACCAC
CACTGTCGCTGCTGCCGTAGGAGGTCTCACCACTCTCGTTCTGAAGAAGA
TTCTGTACGACTTCTTTGATCTTCTCTCAGTACTCAACGGTATCCTCGCC
GGTCTCGTTTCCATCACTGCCTGCTGTGCTTTCGTTGACGTGTGGGCCGC
TGCTATCATTGGTTTTTTTGGTGCTATCATTTATTATGCCACTGCCATGC
TCCTTCTCGACCGTAATATCGATGATCCACTTGAAGCTTTTCCCGTTCAC
GGTGCTCCCGGTTTTTGGGGATGCATTGCTGCCGGTGTTTTCAACCGCAA
AGCCGCTCAGGAAACTGCTGGCTTCACCAATCCCGGTGCCGGTCTCGTTG
ACGGTTCTGCGAGGCTGCTGCTGACAAACTTCTTGGGTTGTCTCATCATT
GTCGGCTGGGTTCTTGGTCTAATTGTTCCGTTCTTCTTCATTCTCATGGA
GGCCGATATCCTTCGTATCTCAAGTGAAGAGGAACGTATTGGTAGCGATA
TCTCCAAGCGTGGAGGTGTCGCCTATCCGGATGACGCCGTGGGCGTTGCC
GCTGATTTTGCCAAAAAGGAATTATTTGGCCATGGAAACGGGAGCACCGG
AAGGCGATGA

protein sequence of Gcaud2676.t1

>Gcaud2676.t1 ID=Gcaud2676.t1|Name=Gcaud2676.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=470bp
MQVADYFFLANGQTHMNASKVAADLIDHASAIDTMFVLFSGFLVFLMQCG
FAMLTAGSVHTKNTKNVLLKKVLDACVGAVAYYLFGYAFAYGPGDRASGF
IGAGNFALSSFSGEPFTDFAFFFFQWALAATAATIVSGSLAERTSFYAHI
GYTFFLTAFVYPVVSHWVWGGGFLSTLVGQGMIDFAGSSVVHMVGGFSGL
AGAIIVGPRFGRFNSDRKPMPLPGHSATLATLGTFLLWFGWYGLNPGSSL
KITGGRFDTVQRCAVTTTVAAAVGGLTTLVLKKILYDFFDLLSVLNGILA
GLVSITACCAFVDVWAAAIIGFFGAIIYYATAMLLLDRNIDDPLEAFPVH
GAPGFWGCIAAGVFNRKAAQETAGFTNPGAGLVDGSARLLLTNFLGCLII
VGWVLGLIVPFFFILMEADILRISSEEERIGSDISKRGGVAYPDDAVGVA
ADFAKKELFGHGNGSTGRR*

mRNA from alignment at NODE_136_length_44848_cov_4.574435:11257..12666+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2676.t1 ID=Gcaud2676.t1|Name=Gcaud2676.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:11257..12666+ (Gracilaria caudata M_176_S67 male)
ATGCAGGTCGCGGATTATTTCTTCCTGGCGAATGGCCAAACACATATGAA
TGCTTCTAAAGTCGCTGCCGATCTCATAGACCATGCATCCGCTATTGACA
CCATGTTTGTCCTTTTCTCAGGCTTTCTTGTCTTTCTTATGCAATGCGGT
TTCGCTATGCTCACTGCAGGTTCTGTTCATACCAAGAACACGAAGAACGT
TCTTCTGAAGAAGGTTTTGGATGCCTGTGTCGGTGCCGTCGCCTATTACC
TTTTCGGTTATGCTTTTGCCTACGGTCCAGGCGATCGCGCCTCAGGCTTC
ATTGGTGCAGGCAACTTTGCTCTCTCCAGCTTCAGTGGAGAGCCGTTCAC
AGACTTCGCCTTCTTCTTCTTCCAGTGGGCCCTCGCTGCCACGGCTGCCA
CCATTGTTTCTGGTTCTCTCGCCGAACGTACTTCCTTCTATGCCCACATA
GGTTACACTTTTTTCCTCACCGCCTTCGTCTATCCTGTCGTGTCTCACTG
GGTTTGGGGAGGTGGATTCCTTTCCACCCTTGTCGGCCAAGGCATGATCG
ACTTTGCTGGCTCCTCTGTCGTTCATATGGTAGGTGGCTTTTCCGGTTTG
GCCGGTGCCATCATTGTTGGTCCTCGTTTCGGGCGCTTCAACTCTGATCG
CAAGCCCATGCCCTTGCCTGGTCACTCTGCCACTCTCGCTACTCTCGGTA
CCTTCCTCCTATGGTTTGGATGGTACGGTCTCAACCCAGGATCGTCCCTT
AAAATAACCGGCGGTCGCTTCGACACCGTTCAGCGTTGTGCCGTGACCAC
CACTGTCGCTGCTGCCGTAGGAGGTCTCACCACTCTCGTTCTGAAGAAGA
TTCTGTACGACTTCTTTGATCTTCTCTCAGTACTCAACGGTATCCTCGCC
GGTCTCGTTTCCATCACTGCCTGCTGTGCTTTCGTTGACGTGTGGGCCGC
TGCTATCATTGGTTTTTTTGGTGCTATCATTTATTATGCCACTGCCATGC
TCCTTCTCGACCGTAATATCGATGATCCACTTGAAGCTTTTCCCGTTCAC
GGTGCTCCCGGTTTTTGGGGATGCATTGCTGCCGGTGTTTTCAACCGCAA
AGCCGCTCAGGAAACTGCTGGCTTCACCAATCCCGGTGCCGGTCTCGTTG
ACGGTTCTGCGAGGCTGCTGCTGACAAACTTCTTGGGTTGTCTCATCATT
GTCGGCTGGGTTCTTGGTCTAATTGTTCCGTTCTTCTTCATTCTCATGGA
GGCCGATATCCTTCGTATCTCAAGTGAAGAGGAACGTATTGGTAGCGATA
TCTCCAAGCGTGGAGGTGTCGCCTATCCGGATGACGCCGTGGGCGTTGCC
GCTGATTTTGCCAAAAAGGAATTATTTGGCCATGGAAACGGGAGCACCGG
AAGGCGATGA

Coding sequence (CDS) from alignment at NODE_136_length_44848_cov_4.574435:11257..12666+

>Gcaud2676.t1 ID=Gcaud2676.t1|Name=Gcaud2676.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1410bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:11257..12666+ (Gracilaria caudata M_176_S67 male)
ATGCAGGTCGCGGATTATTTCTTCCTGGCGAATGGCCAAACACATATGAA
TGCTTCTAAAGTCGCTGCCGATCTCATAGACCATGCATCCGCTATTGACA
CCATGTTTGTCCTTTTCTCAGGCTTTCTTGTCTTTCTTATGCAATGCGGT
TTCGCTATGCTCACTGCAGGTTCTGTTCATACCAAGAACACGAAGAACGT
TCTTCTGAAGAAGGTTTTGGATGCCTGTGTCGGTGCCGTCGCCTATTACC
TTTTCGGTTATGCTTTTGCCTACGGTCCAGGCGATCGCGCCTCAGGCTTC
ATTGGTGCAGGCAACTTTGCTCTCTCCAGCTTCAGTGGAGAGCCGTTCAC
AGACTTCGCCTTCTTCTTCTTCCAGTGGGCCCTCGCTGCCACGGCTGCCA
CCATTGTTTCTGGTTCTCTCGCCGAACGTACTTCCTTCTATGCCCACATA
GGTTACACTTTTTTCCTCACCGCCTTCGTCTATCCTGTCGTGTCTCACTG
GGTTTGGGGAGGTGGATTCCTTTCCACCCTTGTCGGCCAAGGCATGATCG
ACTTTGCTGGCTCCTCTGTCGTTCATATGGTAGGTGGCTTTTCCGGTTTG
GCCGGTGCCATCATTGTTGGTCCTCGTTTCGGGCGCTTCAACTCTGATCG
CAAGCCCATGCCCTTGCCTGGTCACTCTGCCACTCTCGCTACTCTCGGTA
CCTTCCTCCTATGGTTTGGATGGTACGGTCTCAACCCAGGATCGTCCCTT
AAAATAACCGGCGGTCGCTTCGACACCGTTCAGCGTTGTGCCGTGACCAC
CACTGTCGCTGCTGCCGTAGGAGGTCTCACCACTCTCGTTCTGAAGAAGA
TTCTGTACGACTTCTTTGATCTTCTCTCAGTACTCAACGGTATCCTCGCC
GGTCTCGTTTCCATCACTGCCTGCTGTGCTTTCGTTGACGTGTGGGCCGC
TGCTATCATTGGTTTTTTTGGTGCTATCATTTATTATGCCACTGCCATGC
TCCTTCTCGACCGTAATATCGATGATCCACTTGAAGCTTTTCCCGTTCAC
GGTGCTCCCGGTTTTTGGGGATGCATTGCTGCCGGTGTTTTCAACCGCAA
AGCCGCTCAGGAAACTGCTGGCTTCACCAATCCCGGTGCCGGTCTCGTTG
ACGGTTCTGCGAGGCTGCTGCTGACAAACTTCTTGGGTTGTCTCATCATT
GTCGGCTGGGTTCTTGGTCTAATTGTTCCGTTCTTCTTCATTCTCATGGA
GGCCGATATCCTTCGTATCTCAAGTGAAGAGGAACGTATTGGTAGCGATA
TCTCCAAGCGTGGAGGTGTCGCCTATCCGGATGACGCCGTGGGCGTTGCC
GCTGATTTTGCCAAAAAGGAATTATTTGGCCATGGAAACGGGAGCACCGG
AAGGCGATGA