Gcaud1214.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1214.t1
Unique Name	Gcaud1214.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	381

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1358_length_11186_cov_4.670302	contig	NODE_1358_length_11186_cov_4.670302:7645..8787 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1214	Gcaud1214	Gracilaria caudata M_176_S67 male	gene	NODE_1358_length_11186_cov_4.670302 7645..8787 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1214.t1.stop1	Gcaud1214.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1358_length_11186_cov_4.670302 7645..7647 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1214.t1.CDS1	Gcaud1214.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1358_length_11186_cov_4.670302 7645..8787 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1214.t1.exon1	Gcaud1214.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1358_length_11186_cov_4.670302 7645..8787 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1214.t1.start1	Gcaud1214.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1358_length_11186_cov_4.670302 8785..8787 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1214.t1	Gcaud1214.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1358_length_11186_cov_4.670302 7645..8787 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1358_length_11186_cov_4.670302:7645..8787-
coding sequence from alignment at NODE_1358_length_11186_cov_4.670302:7645..8787-

mRNA sequence

>Gcaud1214.t1 ID=Gcaud1214.t1|Name=Gcaud1214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp
MDATGEYHSTVTPETLFGITASRARSVRTLPMVKLIFLLAVAVISLAIVG
QVCDLSSLRWHSRSWRSITEKQLFFIANRPDAALESSIWKMQNNAEYRRI
STVPTRLNRARSPSWVLRGPNVDPSPGAPLIYDSWVFTRHCDGGYTCFVH
LYMVQIADETEVVVGYQIKSLLSNLNVPQTTRARIAAMSEAQVNYIAHEL
VTQVGEGLEQPVCGVDIEFVKAAIKETAAEVLENCDFTNKIEACYPRKSV
LRFPSAPLEKTYMLPTWQCSRKRYCRAVLDVHSINNCVSSRAGYKIFSVD
DEVRSVDEGTKGRIDSTDREKACQWANTLINEVHEDLGDLGCDLDVEAVC
DGMLAGAKTVISCTQTDQDSCLSLTDASCA*

spliced messenger RNA

>Gcaud1214.t1 ID=Gcaud1214.t1|Name=Gcaud1214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:7645..8787- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGACCGGTGAGTACCATTCGACGGTAACGCCAGAAACTCTGTT
CGGAATTACTGCCTCACGAGCTCGTTCCGTTCGTACACTTCCCATGGTTA
AGCTTATCTTTCTCCTAGCCGTCGCTGTAATTTCCTTGGCGATTGTGGGA
CAGGTATGTGATTTAAGTTCCCTTCGTTGGCACTCTCGATCATGGAGGTC
CATAACAGAGAAGCAATTGTTCTTCATCGCCAATCGCCCGGATGCCGCAC
TGGAGTCTTCGATATGGAAAATGCAGAATAACGCAGAATACCGGCGCATC
TCGACCGTACCAACGAGGTTGAACCGCGCAAGATCACCCTCGTGGGTTTT
GCGAGGCCCAAACGTAGACCCATCTCCAGGAGCTCCGCTGATCTATGATT
CGTGGGTTTTTACGCGTCATTGCGATGGTGGCTACACCTGTTTCGTACAT
TTGTACATGGTTCAAATCGCAGATGAAACTGAAGTGGTGGTCGGCTATCA
GATAAAATCTTTGCTCAGCAATCTGAACGTACCGCAAACGACGCGTGCAC
GCATTGCTGCAATGTCTGAAGCTCAAGTGAATTACATTGCGCACGAACTG
GTGACGCAAGTGGGCGAAGGACTGGAGCAGCCAGTGTGTGGAGTTGATAT
AGAGTTTGTGAAGGCGGCAATCAAAGAGACCGCAGCTGAAGTGTTAGAGA
ACTGTGACTTTACGAACAAAATCGAAGCTTGCTATCCTCGAAAATCAGTG
CTACGATTTCCATCGGCTCCACTGGAAAAGACTTACATGCTCCCAACTTG
GCAGTGCAGCCGGAAAAGGTACTGTCGAGCCGTACTTGACGTGCATTCGA
TCAACAACTGCGTGTCCTCACGAGCCGGTTACAAGATTTTCTCAGTGGAC
GATGAAGTGCGGTCTGTGGACGAAGGCACGAAAGGTCGCATTGATAGTAC
GGACCGTGAAAAGGCTTGCCAGTGGGCGAATACATTGATCAACGAGGTCC
ACGAGGACTTGGGTGATTTGGGCTGCGACTTGGACGTAGAGGCAGTTTGT
GATGGTATGCTGGCGGGTGCCAAAACAGTGATATCATGCACTCAAACCGA
TCAAGACTCGTGCCTGAGCTTGACTGATGCGAGTTGTGCTTAG

protein sequence of Gcaud1214.t1

>Gcaud1214.t1 ID=Gcaud1214.t1|Name=Gcaud1214.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=381bp
MDATGEYHSTVTPETLFGITASRARSVRTLPMVKLIFLLAVAVISLAIVG
QVCDLSSLRWHSRSWRSITEKQLFFIANRPDAALESSIWKMQNNAEYRRI
STVPTRLNRARSPSWVLRGPNVDPSPGAPLIYDSWVFTRHCDGGYTCFVH
LYMVQIADETEVVVGYQIKSLLSNLNVPQTTRARIAAMSEAQVNYIAHEL
VTQVGEGLEQPVCGVDIEFVKAAIKETAAEVLENCDFTNKIEACYPRKSV
LRFPSAPLEKTYMLPTWQCSRKRYCRAVLDVHSINNCVSSRAGYKIFSVD
DEVRSVDEGTKGRIDSTDREKACQWANTLINEVHEDLGDLGCDLDVEAVC
DGMLAGAKTVISCTQTDQDSCLSLTDASCA*

mRNA from alignment at NODE_1358_length_11186_cov_4.670302:7645..8787-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1214.t1 ID=Gcaud1214.t1|Name=Gcaud1214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:7645..8787- (Gracilaria caudata M_176_S67 male)
ATGGATGCGACCGGTGAGTACCATTCGACGGTAACGCCAGAAACTCTGTT
CGGAATTACTGCCTCACGAGCTCGTTCCGTTCGTACACTTCCCATGGTTA
AGCTTATCTTTCTCCTAGCCGTCGCTGTAATTTCCTTGGCGATTGTGGGA
CAGGTATGTGATTTAAGTTCCCTTCGTTGGCACTCTCGATCATGGAGGTC
CATAACAGAGAAGCAATTGTTCTTCATCGCCAATCGCCCGGATGCCGCAC
TGGAGTCTTCGATATGGAAAATGCAGAATAACGCAGAATACCGGCGCATC
TCGACCGTACCAACGAGGTTGAACCGCGCAAGATCACCCTCGTGGGTTTT
GCGAGGCCCAAACGTAGACCCATCTCCAGGAGCTCCGCTGATCTATGATT
CGTGGGTTTTTACGCGTCATTGCGATGGTGGCTACACCTGTTTCGTACAT
TTGTACATGGTTCAAATCGCAGATGAAACTGAAGTGGTGGTCGGCTATCA
GATAAAATCTTTGCTCAGCAATCTGAACGTACCGCAAACGACGCGTGCAC
GCATTGCTGCAATGTCTGAAGCTCAAGTGAATTACATTGCGCACGAACTG
GTGACGCAAGTGGGCGAAGGACTGGAGCAGCCAGTGTGTGGAGTTGATAT
AGAGTTTGTGAAGGCGGCAATCAAAGAGACCGCAGCTGAAGTGTTAGAGA
ACTGTGACTTTACGAACAAAATCGAAGCTTGCTATCCTCGAAAATCAGTG
CTACGATTTCCATCGGCTCCACTGGAAAAGACTTACATGCTCCCAACTTG
GCAGTGCAGCCGGAAAAGGTACTGTCGAGCCGTACTTGACGTGCATTCGA
TCAACAACTGCGTGTCCTCACGAGCCGGTTACAAGATTTTCTCAGTGGAC
GATGAAGTGCGGTCTGTGGACGAAGGCACGAAAGGTCGCATTGATAGTAC
GGACCGTGAAAAGGCTTGCCAGTGGGCGAATACATTGATCAACGAGGTCC
ACGAGGACTTGGGTGATTTGGGCTGCGACTTGGACGTAGAGGCAGTTTGT
GATGGTATGCTGGCGGGTGCCAAAACAGTGATATCATGCACTCAAACCGA
TCAAGACTCGTGCCTGAGCTTGACTGATGCGAGTTGTGCTTAG

Coding sequence (CDS) from alignment at NODE_1358_length_11186_cov_4.670302:7645..8787-

>Gcaud1214.t1 ID=Gcaud1214.t1|Name=Gcaud1214.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1143bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:7645..8787- (Gracilaria caudata M_176_S67 male)
ATGGATGCGACCGGTGAGTACCATTCGACGGTAACGCCAGAAACTCTGTT
CGGAATTACTGCCTCACGAGCTCGTTCCGTTCGTACACTTCCCATGGTTA
AGCTTATCTTTCTCCTAGCCGTCGCTGTAATTTCCTTGGCGATTGTGGGA
CAGGTATGTGATTTAAGTTCCCTTCGTTGGCACTCTCGATCATGGAGGTC
CATAACAGAGAAGCAATTGTTCTTCATCGCCAATCGCCCGGATGCCGCAC
TGGAGTCTTCGATATGGAAAATGCAGAATAACGCAGAATACCGGCGCATC
TCGACCGTACCAACGAGGTTGAACCGCGCAAGATCACCCTCGTGGGTTTT
GCGAGGCCCAAACGTAGACCCATCTCCAGGAGCTCCGCTGATCTATGATT
CGTGGGTTTTTACGCGTCATTGCGATGGTGGCTACACCTGTTTCGTACAT
TTGTACATGGTTCAAATCGCAGATGAAACTGAAGTGGTGGTCGGCTATCA
GATAAAATCTTTGCTCAGCAATCTGAACGTACCGCAAACGACGCGTGCAC
GCATTGCTGCAATGTCTGAAGCTCAAGTGAATTACATTGCGCACGAACTG
GTGACGCAAGTGGGCGAAGGACTGGAGCAGCCAGTGTGTGGAGTTGATAT
AGAGTTTGTGAAGGCGGCAATCAAAGAGACCGCAGCTGAAGTGTTAGAGA
ACTGTGACTTTACGAACAAAATCGAAGCTTGCTATCCTCGAAAATCAGTG
CTACGATTTCCATCGGCTCCACTGGAAAAGACTTACATGCTCCCAACTTG
GCAGTGCAGCCGGAAAAGGTACTGTCGAGCCGTACTTGACGTGCATTCGA
TCAACAACTGCGTGTCCTCACGAGCCGGTTACAAGATTTTCTCAGTGGAC
GATGAAGTGCGGTCTGTGGACGAAGGCACGAAAGGTCGCATTGATAGTAC
GGACCGTGAAAAGGCTTGCCAGTGGGCGAATACATTGATCAACGAGGTCC
ACGAGGACTTGGGTGATTTGGGCTGCGACTTGGACGTAGAGGCAGTTTGT
GATGGTATGCTGGCGGGTGCCAAAACAGTGATATCATGCACTCAAACCGA
TCAAGACTCGTGCCTGAGCTTGACTGATGCGAGTTGTGCTTAG