Gcaud6904.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud6904.t1
Unique NameGcaud6904.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length108
Homology
BLAST of Gcaud6904.t1 vs. uniprot
Match: A0A2V3J6C4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6C4_9FLOR)

HSP 1 Score: 158 bits (399), Expect = 3.340e-48
Identity = 83/99 (83.84%), Postives = 89/99 (89.90%), Query Frame = 0
Query:    1 MKIPEQVYSGMPSGISSTAALVILAINVFMPGVGTIISAFLAEECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRLYRKHST-DAVP-AASDEESPLV 97
            MKIPEQVYSGMP G+SSTAALVILAINVF PGVGTIISAFL  ECM ETVFVG+LQL+TSPLLGLGF WAIAWSIRLYRKHST D  P +A+DEE+PLV
Sbjct:    1 MKIPEQVYSGMPRGLSSTAALVILAINVFAPGVGTIISAFLGTECMNETVFVGILQLLTSPLLGLGFFWAIAWSIRLYRKHSTADETPTSATDEETPLV 99          
BLAST of Gcaud6904.t1 vs. uniprot
Match: R7Q4E7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4E7_CHOCR)

HSP 1 Score: 66.2 bits (160), Expect = 4.510e-11
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   20 ALVILAINVFMPGVGTIISAFLAEECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRLYRKHSTDAVPAASDEES 94
            +++ILAINVF PGVGT+I+  +  +    T+ VG+LQL+ S  L +G+IWAI WS+ LY+K +   VP   ++++
Sbjct:   37 SMIILAINVFFPGVGTMIAGCMGTKNNCSTITVGILQLLLSVFL-IGWIWAIIWSVMLYKKVAKQNVPTTHNQQT 110          
BLAST of Gcaud6904.t1 vs. uniprot
Match: D7FIX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIX6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.680e-8
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 0
Query:   12 PSGISSTAALVILAINVFMPGVGTIISAFLAEECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRLY---RKH 81
            P  +    A V+L INVF+PG+GT+I+ FL   C  +++F G+LQL+T+ L+ +G++W++ W   L+   R+H
Sbjct:   11 PPVLRKPLAFVLLVINVFVPGLGTVIAGFLT--CKLKSIFTGILQLVTTSLV-VGWVWSVMWGWELWTLARRH 80          
BLAST of Gcaud6904.t1 vs. uniprot
Match: A0A6A5BW58_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BW58_NAEFO)

HSP 1 Score: 53.5 bits (127), Expect = 2.980e-7
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 0
Query:   21 LVILAINVFMPGVGTIISAFLA--EECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRL 77
            +VIL IN F PG GTI++A +   +E MQ T+ VG+LQ++TS +L +G++WAI W  ++
Sbjct:   16 IVILLINFFFPGFGTILAALITSEKEKMQPTLIVGILQIVTSWIL-IGWLWAIWWGYKI 73          
BLAST of Gcaud6904.t1 vs. uniprot
Match: A0A2V3IZL1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZL1_9FLOR)

HSP 1 Score: 53.5 bits (127), Expect = 1.550e-6
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 0
Query:    8 YSGMPSGISSTAALVILAINVFMPGVGTIISAFLAEECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRLYRK 80
            + G+P+ IS   A +I+ +N+F PGVGTII++ L        + VG+LQL   P+L +G+IWA+ W + L ++
Sbjct:    3 FIGLPNRISRDEATMIIIVNLFFPGVGTIIASCLGTHG-GAAICVGILQLCLFPVL-IGWIWALCWGLELRKR 73          
The following BLAST results are available for this feature:
BLAST of Gcaud6904.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J6C4_9FLOR3.340e-4883.84Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q4E7_CHOCR4.510e-1144.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
D7FIX6_ECTSI1.680e-839.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6A5BW58_NAEFO2.980e-747.46Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A2V3IZL1_9FLOR1.550e-639.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026673SPEC3/StumPFAMPF15795Spec3coord: 17..77
e-value: 1.9E-6
score: 28.4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..53
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..107
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 52..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1351_length_11210_cov_3.989927contigNODE_1351_length_11210_cov_3.989927:7155..7478 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud6904.t1Gcaud6904.t1Gracilaria caudata M_176_S67 malemRNANODE_1351_length_11210_cov_3.989927 7155..7478 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud6904.t1 ID=Gcaud6904.t1|Name=Gcaud6904.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=108bp
MKIPEQVYSGMPSGISSTAALVILAINVFMPGVGTIISAFLAEECMQETV
FVGVLQLITSPLLGLGFIWAIAWSIRLYRKHSTDAVPAASDEESPLVTSL
PQAPAQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026673SPEC3/Stum