Gcaud3464.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3464.t1
Unique Name	Gcaud3464.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	707

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_133_length_45383_cov_4.895280	contig	NODE_133_length_45383_cov_4.895280:27807..29927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	3.47e-25
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3464	Gcaud3464	Gracilaria caudata M_176_S67 male	gene	NODE_133_length_45383_cov_4.895280 27807..29927 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3464.t1.start1	Gcaud3464.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_133_length_45383_cov_4.895280 27807..27809 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3464.t1.CDS1	Gcaud3464.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_133_length_45383_cov_4.895280 27807..29927 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3464.t1.exon1	Gcaud3464.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_133_length_45383_cov_4.895280 27807..29927 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3464.t1.stop1	Gcaud3464.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_133_length_45383_cov_4.895280 29925..29927 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3464.t1	Gcaud3464.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_133_length_45383_cov_4.895280 27807..29927 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_133_length_45383_cov_4.895280:27807..29927+
coding sequence from alignment at NODE_133_length_45383_cov_4.895280:27807..29927+

mRNA sequence

>Gcaud3464.t1 ID=Gcaud3464.t1|Name=Gcaud3464.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=707bp
MNTPGKHPIGNQYSTHGCRFRLSWTSPWNYSSITMRIRDSYFLKDGPIVQ
FTCLKSTRWKQCFNRAKRGLWEGTTSLVVLISLLLILIFLLGVESSLHEG
DLPSASAGYAFLTREKDSSAVYRQLHRFHSVPNRYLQLLTPEQHHDLFLM
MSTPASTSVLATPSRRAVFVHITKCRLHPCLRAIASAITYARVTHRVAVI
FVDVVDGISVPQLLELSANGALRDEAIFIPLSVPTLDFHGENQTVVSDWA
EFTVVRAVAPNSLIDVNTSKESNLVSDSRAPAQDYFETLPRIGNTEDVAT
LDNLAALDTHVSLTLSEVVWSRYAPRTLQEGLFQDQLHPMAGIPPHVISR
ASILGRHRATTNSEITDSMLHIDYDIPEMLWRGMGELERKLLLLKLESKR
RRGVENPRIMFVHTQYGLGNRLRALGSAMAFARRTGRVLVLIWVPDQHLN
CRFTDLFVASDEFVVSNAFSPGEEWPFALNKKKDRKMKNVKWYNFMRVNG
VKVISSEQPVLDDAERHIYVSTCYVIQSPVTPFIIRTTSSYWQVLRTLSP
HVDVVRLVERFSSYPLSSMIGIHIRGKNIKTDISGINATDYSEESSRTTD
FWRNLTKVDTFVEEMRKQTADQLFYVAADQKEVFAKLEHEFPSRIFYTPR
HCDSRDRDCLPFALADILLLAKCASLRGSYWSSFSELSTRIGGARFLLAG
IDFGRP*

spliced messenger RNA

>Gcaud3464.t1 ID=Gcaud3464.t1|Name=Gcaud3464.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:27807..29927+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACTCCGGGAAAGCACCCCATTGGAAATCAATACTCGACGCACGG
CTGTCGTTTCCGACTTTCATGGACTTCTCCATGGAATTATTCTTCCATCA
CCATGCGTATCAGGGATTCATACTTCTTGAAGGATGGGCCGATTGTTCAG
TTTACTTGTCTCAAATCGACTAGGTGGAAGCAGTGCTTCAATCGAGCAAA
GCGTGGACTTTGGGAAGGAACAACTTCGTTGGTGGTATTAATCTCCTTGT
TGCTGATCCTCATTTTTTTGCTTGGCGTGGAGTCTTCTCTGCACGAAGGG
GACCTTCCTTCGGCATCGGCGGGATATGCCTTTCTGACCAGAGAGAAGGA
CTCATCTGCAGTGTATCGCCAGCTGCATCGTTTTCATTCTGTTCCAAATC
GCTATCTTCAACTTCTGACTCCTGAACAGCATCACGATCTTTTCCTAATG
ATGTCCACGCCAGCATCGACTAGCGTTCTCGCAACACCCAGCCGCCGCGC
AGTTTTTGTGCATATCACCAAATGCAGGCTTCACCCATGTTTACGAGCTA
TTGCGAGTGCTATTACATATGCCCGCGTTACTCACCGAGTTGCTGTCATA
TTTGTTGACGTTGTTGATGGAATTAGTGTTCCTCAGCTGTTAGAACTGTC
AGCGAATGGCGCACTACGTGACGAAGCCATCTTCATCCCATTGAGCGTCC
CAACATTGGACTTTCACGGAGAAAACCAGACTGTTGTCAGTGACTGGGCA
GAGTTCACGGTGGTTCGAGCAGTCGCTCCAAACAGTTTAATCGATGTAAA
CACCTCCAAGGAATCGAACCTCGTTTCTGACAGTAGGGCTCCAGCACAGG
ATTACTTTGAAACATTACCTAGGATAGGGAACACGGAGGATGTAGCAACC
CTGGATAACTTGGCTGCGCTCGACACTCATGTTTCACTAACATTATCTGA
AGTTGTTTGGTCACGATATGCTCCGAGGACTCTACAGGAGGGACTCTTTC
AAGATCAGTTACATCCCATGGCAGGGATACCGCCCCATGTAATATCCCGA
GCATCCATTCTGGGCCGTCATCGAGCAACAACGAATTCGGAGATAACGGA
CTCTATGCTTCATATCGACTATGATATTCCCGAAATGCTCTGGCGTGGAA
TGGGCGAACTTGAAAGAAAACTTCTTCTATTGAAACTTGAAAGCAAAAGG
AGACGAGGAGTGGAAAACCCAAGGATTATGTTCGTACATACCCAGTATGG
TCTTGGAAACCGTCTCAGAGCTCTTGGCTCGGCAATGGCCTTTGCCAGAA
GGACAGGCAGAGTTCTGGTGCTGATATGGGTCCCCGATCAACACCTCAAC
TGCAGATTTACAGATTTGTTCGTCGCCAGTGACGAGTTCGTCGTTAGTAA
CGCGTTCTCGCCAGGGGAAGAATGGCCTTTCGCCTTAAACAAAAAGAAGG
ATCGTAAGATGAAGAATGTAAAGTGGTACAACTTCATGAGAGTGAACGGC
GTGAAAGTCATTTCATCCGAACAACCTGTCCTGGATGATGCAGAACGTCA
CATTTATGTTTCCACATGTTACGTTATCCAGTCTCCAGTCACGCCGTTCA
TCATAAGGACGACCAGCTCGTATTGGCAAGTCCTCCGTACGCTGTCGCCT
CATGTGGATGTTGTACGACTTGTTGAACGGTTTTCGAGTTACCCTCTTTC
GAGTATGATTGGTATTCATATTAGGGGGAAGAACATTAAGACAGATATCA
GCGGGATCAATGCAACTGATTACTCCGAAGAATCTTCACGAACCACGGAC
TTTTGGAGAAACCTAACGAAAGTGGATACATTTGTGGAGGAAATGCGAAA
ACAGACCGCGGATCAATTGTTTTATGTTGCCGCTGACCAAAAGGAAGTGT
TTGCAAAGCTCGAGCATGAGTTTCCCTCACGTATATTTTACACACCACGA
CACTGCGACAGTCGAGATAGAGATTGTTTACCTTTCGCTCTAGCAGATAT
CTTATTACTAGCGAAATGTGCATCATTACGAGGAAGCTATTGGAGTTCTT
TCTCGGAATTGTCGACGCGTATCGGTGGAGCGCGGTTTCTGCTTGCTGGA
ATTGATTTTGGTCGGCCGTAA

protein sequence of Gcaud3464.t1

>Gcaud3464.t1 ID=Gcaud3464.t1|Name=Gcaud3464.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=707bp
MNTPGKHPIGNQYSTHGCRFRLSWTSPWNYSSITMRIRDSYFLKDGPIVQ
FTCLKSTRWKQCFNRAKRGLWEGTTSLVVLISLLLILIFLLGVESSLHEG
DLPSASAGYAFLTREKDSSAVYRQLHRFHSVPNRYLQLLTPEQHHDLFLM
MSTPASTSVLATPSRRAVFVHITKCRLHPCLRAIASAITYARVTHRVAVI
FVDVVDGISVPQLLELSANGALRDEAIFIPLSVPTLDFHGENQTVVSDWA
EFTVVRAVAPNSLIDVNTSKESNLVSDSRAPAQDYFETLPRIGNTEDVAT
LDNLAALDTHVSLTLSEVVWSRYAPRTLQEGLFQDQLHPMAGIPPHVISR
ASILGRHRATTNSEITDSMLHIDYDIPEMLWRGMGELERKLLLLKLESKR
RRGVENPRIMFVHTQYGLGNRLRALGSAMAFARRTGRVLVLIWVPDQHLN
CRFTDLFVASDEFVVSNAFSPGEEWPFALNKKKDRKMKNVKWYNFMRVNG
VKVISSEQPVLDDAERHIYVSTCYVIQSPVTPFIIRTTSSYWQVLRTLSP
HVDVVRLVERFSSYPLSSMIGIHIRGKNIKTDISGINATDYSEESSRTTD
FWRNLTKVDTFVEEMRKQTADQLFYVAADQKEVFAKLEHEFPSRIFYTPR
HCDSRDRDCLPFALADILLLAKCASLRGSYWSSFSELSTRIGGARFLLAG
IDFGRP*

mRNA from alignment at NODE_133_length_45383_cov_4.895280:27807..29927+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3464.t1 ID=Gcaud3464.t1|Name=Gcaud3464.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:27807..29927+ (Gracilaria caudata M_176_S67 male)
ATGAATACTCCGGGAAAGCACCCCATTGGAAATCAATACTCGACGCACGG
CTGTCGTTTCCGACTTTCATGGACTTCTCCATGGAATTATTCTTCCATCA
CCATGCGTATCAGGGATTCATACTTCTTGAAGGATGGGCCGATTGTTCAG
TTTACTTGTCTCAAATCGACTAGGTGGAAGCAGTGCTTCAATCGAGCAAA
GCGTGGACTTTGGGAAGGAACAACTTCGTTGGTGGTATTAATCTCCTTGT
TGCTGATCCTCATTTTTTTGCTTGGCGTGGAGTCTTCTCTGCACGAAGGG
GACCTTCCTTCGGCATCGGCGGGATATGCCTTTCTGACCAGAGAGAAGGA
CTCATCTGCAGTGTATCGCCAGCTGCATCGTTTTCATTCTGTTCCAAATC
GCTATCTTCAACTTCTGACTCCTGAACAGCATCACGATCTTTTCCTAATG
ATGTCCACGCCAGCATCGACTAGCGTTCTCGCAACACCCAGCCGCCGCGC
AGTTTTTGTGCATATCACCAAATGCAGGCTTCACCCATGTTTACGAGCTA
TTGCGAGTGCTATTACATATGCCCGCGTTACTCACCGAGTTGCTGTCATA
TTTGTTGACGTTGTTGATGGAATTAGTGTTCCTCAGCTGTTAGAACTGTC
AGCGAATGGCGCACTACGTGACGAAGCCATCTTCATCCCATTGAGCGTCC
CAACATTGGACTTTCACGGAGAAAACCAGACTGTTGTCAGTGACTGGGCA
GAGTTCACGGTGGTTCGAGCAGTCGCTCCAAACAGTTTAATCGATGTAAA
CACCTCCAAGGAATCGAACCTCGTTTCTGACAGTAGGGCTCCAGCACAGG
ATTACTTTGAAACATTACCTAGGATAGGGAACACGGAGGATGTAGCAACC
CTGGATAACTTGGCTGCGCTCGACACTCATGTTTCACTAACATTATCTGA
AGTTGTTTGGTCACGATATGCTCCGAGGACTCTACAGGAGGGACTCTTTC
AAGATCAGTTACATCCCATGGCAGGGATACCGCCCCATGTAATATCCCGA
GCATCCATTCTGGGCCGTCATCGAGCAACAACGAATTCGGAGATAACGGA
CTCTATGCTTCATATCGACTATGATATTCCCGAAATGCTCTGGCGTGGAA
TGGGCGAACTTGAAAGAAAACTTCTTCTATTGAAACTTGAAAGCAAAAGG
AGACGAGGAGTGGAAAACCCAAGGATTATGTTCGTACATACCCAGTATGG
TCTTGGAAACCGTCTCAGAGCTCTTGGCTCGGCAATGGCCTTTGCCAGAA
GGACAGGCAGAGTTCTGGTGCTGATATGGGTCCCCGATCAACACCTCAAC
TGCAGATTTACAGATTTGTTCGTCGCCAGTGACGAGTTCGTCGTTAGTAA
CGCGTTCTCGCCAGGGGAAGAATGGCCTTTCGCCTTAAACAAAAAGAAGG
ATCGTAAGATGAAGAATGTAAAGTGGTACAACTTCATGAGAGTGAACGGC
GTGAAAGTCATTTCATCCGAACAACCTGTCCTGGATGATGCAGAACGTCA
CATTTATGTTTCCACATGTTACGTTATCCAGTCTCCAGTCACGCCGTTCA
TCATAAGGACGACCAGCTCGTATTGGCAAGTCCTCCGTACGCTGTCGCCT
CATGTGGATGTTGTACGACTTGTTGAACGGTTTTCGAGTTACCCTCTTTC
GAGTATGATTGGTATTCATATTAGGGGGAAGAACATTAAGACAGATATCA
GCGGGATCAATGCAACTGATTACTCCGAAGAATCTTCACGAACCACGGAC
TTTTGGAGAAACCTAACGAAAGTGGATACATTTGTGGAGGAAATGCGAAA
ACAGACCGCGGATCAATTGTTTTATGTTGCCGCTGACCAAAAGGAAGTGT
TTGCAAAGCTCGAGCATGAGTTTCCCTCACGTATATTTTACACACCACGA
CACTGCGACAGTCGAGATAGAGATTGTTTACCTTTCGCTCTAGCAGATAT
CTTATTACTAGCGAAATGTGCATCATTACGAGGAAGCTATTGGAGTTCTT
TCTCGGAATTGTCGACGCGTATCGGTGGAGCGCGGTTTCTGCTTGCTGGA
ATTGATTTTGGTCGGCCGTAA

Coding sequence (CDS) from alignment at NODE_133_length_45383_cov_4.895280:27807..29927+

>Gcaud3464.t1 ID=Gcaud3464.t1|Name=Gcaud3464.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2121bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:27807..29927+ (Gracilaria caudata M_176_S67 male)
ATGAATACTCCGGGAAAGCACCCCATTGGAAATCAATACTCGACGCACGG
CTGTCGTTTCCGACTTTCATGGACTTCTCCATGGAATTATTCTTCCATCA
CCATGCGTATCAGGGATTCATACTTCTTGAAGGATGGGCCGATTGTTCAG
TTTACTTGTCTCAAATCGACTAGGTGGAAGCAGTGCTTCAATCGAGCAAA
GCGTGGACTTTGGGAAGGAACAACTTCGTTGGTGGTATTAATCTCCTTGT
TGCTGATCCTCATTTTTTTGCTTGGCGTGGAGTCTTCTCTGCACGAAGGG
GACCTTCCTTCGGCATCGGCGGGATATGCCTTTCTGACCAGAGAGAAGGA
CTCATCTGCAGTGTATCGCCAGCTGCATCGTTTTCATTCTGTTCCAAATC
GCTATCTTCAACTTCTGACTCCTGAACAGCATCACGATCTTTTCCTAATG
ATGTCCACGCCAGCATCGACTAGCGTTCTCGCAACACCCAGCCGCCGCGC
AGTTTTTGTGCATATCACCAAATGCAGGCTTCACCCATGTTTACGAGCTA
TTGCGAGTGCTATTACATATGCCCGCGTTACTCACCGAGTTGCTGTCATA
TTTGTTGACGTTGTTGATGGAATTAGTGTTCCTCAGCTGTTAGAACTGTC
AGCGAATGGCGCACTACGTGACGAAGCCATCTTCATCCCATTGAGCGTCC
CAACATTGGACTTTCACGGAGAAAACCAGACTGTTGTCAGTGACTGGGCA
GAGTTCACGGTGGTTCGAGCAGTCGCTCCAAACAGTTTAATCGATGTAAA
CACCTCCAAGGAATCGAACCTCGTTTCTGACAGTAGGGCTCCAGCACAGG
ATTACTTTGAAACATTACCTAGGATAGGGAACACGGAGGATGTAGCAACC
CTGGATAACTTGGCTGCGCTCGACACTCATGTTTCACTAACATTATCTGA
AGTTGTTTGGTCACGATATGCTCCGAGGACTCTACAGGAGGGACTCTTTC
AAGATCAGTTACATCCCATGGCAGGGATACCGCCCCATGTAATATCCCGA
GCATCCATTCTGGGCCGTCATCGAGCAACAACGAATTCGGAGATAACGGA
CTCTATGCTTCATATCGACTATGATATTCCCGAAATGCTCTGGCGTGGAA
TGGGCGAACTTGAAAGAAAACTTCTTCTATTGAAACTTGAAAGCAAAAGG
AGACGAGGAGTGGAAAACCCAAGGATTATGTTCGTACATACCCAGTATGG
TCTTGGAAACCGTCTCAGAGCTCTTGGCTCGGCAATGGCCTTTGCCAGAA
GGACAGGCAGAGTTCTGGTGCTGATATGGGTCCCCGATCAACACCTCAAC
TGCAGATTTACAGATTTGTTCGTCGCCAGTGACGAGTTCGTCGTTAGTAA
CGCGTTCTCGCCAGGGGAAGAATGGCCTTTCGCCTTAAACAAAAAGAAGG
ATCGTAAGATGAAGAATGTAAAGTGGTACAACTTCATGAGAGTGAACGGC
GTGAAAGTCATTTCATCCGAACAACCTGTCCTGGATGATGCAGAACGTCA
CATTTATGTTTCCACATGTTACGTTATCCAGTCTCCAGTCACGCCGTTCA
TCATAAGGACGACCAGCTCGTATTGGCAAGTCCTCCGTACGCTGTCGCCT
CATGTGGATGTTGTACGACTTGTTGAACGGTTTTCGAGTTACCCTCTTTC
GAGTATGATTGGTATTCATATTAGGGGGAAGAACATTAAGACAGATATCA
GCGGGATCAATGCAACTGATTACTCCGAAGAATCTTCACGAACCACGGAC
TTTTGGAGAAACCTAACGAAAGTGGATACATTTGTGGAGGAAATGCGAAA
ACAGACCGCGGATCAATTGTTTTATGTTGCCGCTGACCAAAAGGAAGTGT
TTGCAAAGCTCGAGCATGAGTTTCCCTCACGTATATTTTACACACCACGA
CACTGCGACAGTCGAGATAGAGATTGTTTACCTTTCGCTCTAGCAGATAT
CTTATTACTAGCGAAATGTGCATCATTACGAGGAAGCTATTGGAGTTCTT
TCTCGGAATTGTCGACGCGTATCGGTGGAGCGCGGTTTCTGCTTGCTGGA
ATTGATTTTGGTCGGCCGTAA