Gcaud3455.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3455.t1
Unique Name	Gcaud3455.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	447

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_133_length_45383_cov_4.895280	contig	NODE_133_length_45383_cov_4.895280:794..2134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT050CT
PFAMs	EamA
Max annot lvl	2759\|Eukaryota
Evalue	3.41e-62
EggNOG OGs	COG0697@1\|root,2S2UV@2759\|Eukaryota
Description	pyrimidine nucleotide-sugar transmembrane transport
COG category	EG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3455	Gcaud3455	Gracilaria caudata M_176_S67 male	gene	NODE_133_length_45383_cov_4.895280 794..2134 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3455.t1.start1	Gcaud3455.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_133_length_45383_cov_4.895280 794..796 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3455.t1.CDS1	Gcaud3455.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_133_length_45383_cov_4.895280 794..2134 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3455.t1.exon1	Gcaud3455.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_133_length_45383_cov_4.895280 794..2134 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3455.t1.stop1	Gcaud3455.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_133_length_45383_cov_4.895280 2132..2134 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3455.t1	Gcaud3455.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_133_length_45383_cov_4.895280 794..2134 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_133_length_45383_cov_4.895280:794..2134+
coding sequence from alignment at NODE_133_length_45383_cov_4.895280:794..2134+

mRNA sequence

>Gcaud3455.t1 ID=Gcaud3455.t1|Name=Gcaud3455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=447bp
MRAVTQSASFVAPQSLPSSFPRRAQALVYKRRRTPAPLHVVVHRRRVAPS
LSLHGDEPQQSATQPLAQPSVEDASRPVDHSPASANGVSSNVTSTHNTQS
TRRTTSSSQRSALQISLGPVNLSVPPRWLLFTVPLMWGSFAPAVRLLYSQ
EPHQDPAIFNSERLLLSTIIYVPILLSEARAFLTRNQSSPDARNRFSFFP
AGIELGVYVFLANVAQVIGLQQTSASRAAFLVQLQTVIVPVMAGVFGNAN
IPISTWASSVVAVTGVALLSSDKGHGTVASLSGDALEVLSALFFSLYVFR
LEKYCNSVAANPLVATKIAVQALLSIGWALFAQVGSNIVHAPSDAPPHVV
TWTVSAVAINALIVAWTGLVSSALSGWAQTKGQQGVPASEAVVIFATQPL
WASALAAVLLGESFGPRGLAGGALIIAATLIASRKGQREEDEEKQT*

spliced messenger RNA

>Gcaud3455.t1 ID=Gcaud3455.t1|Name=Gcaud3455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:794..2134+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCTGTGACGCAGAGCGCCTCCTTCGTCGCGCCGCAGTCACTTCC
CTCATCTTTTCCGCGTCGCGCGCAGGCGCTCGTGTACAAGcgtcgtcgta
cacccgcgccgttgcacgtggtcgtgcatcgccgtcgcgtcgcGCCCTCG
CTTTCGCTTCACGGTGACGAGCCACAACAATCCGCCACACAGCCGCTCGC
ACAGCCTTCCGTCGAAGATGCCTCGCGTCCCGTCGATCACAGCCCCGCAT
CCGCAAACGGCGTATCTTCCAACGTCACATCCACCCACAACACGCAATCC
ACTCGTCGCACCACCTCGTCGTCACAACGCTCTGCGCTCCAAATTTCGCT
AGGCCCGGTAAACCTGTCCGTACCACCACGATGGTTATTGTTCACCGTGC
CGCTTATGTGGGGTTCATTCGCCCCCGCCGTCCGTCTGCTGTACTCTCAA
GAGCCGCATCAAGATCCCGCCATATTCAATTCGGAGCGTCTCCTATTGTC
CACCATCATCTATGTACCCATTCTCTTGTCCGAGGCGCGTGCATTTCTCA
CTCGCAACCAATCCTCCCCCGACGCTCGCAATCGCTTTTCGTTTTTTCCG
GCGGGCATTGAGCTCGGCGTGTATGTATTTCTGGCCAATGTTGCACAAGT
CATTGGTTTACAACAGACCAGTGCCAGCCGCGCCGCTTTTCTCGTTCAAT
TACAAACGGTGATAGTGCCAGTTATGGCCGGCGTATTTGGCAACGCCAAC
ATCCCAATCTCCACGTGGGCGTCGTCTGTTGTGGCCGTCACGGGTGTGGC
TTTGCTCAGTTCGGACAAGGGACACGGTACCGTCGCCTCTCTATCCGGCG
ATGCATTGGAAGTACTTTCCGCACTCTTCTTTTCCCTGTATGTGTTCAGA
TTAGAAAAGTATTGCAACAGCGTAGCCGCCAACCCGTTGGTGGCCACCAA
GATCGCCGTACAGGCACTTTTGTCTATTGGCTGGGCGCTCTTTGCTCAGG
TCGGCTCAAACATTGTGCACGCACCCTCCGATGCACCGCCACACGTCGTG
ACGTGGACTGTGAGCGCTGTCGCGATTAACGCGCTCATTGTGGCGTGGAC
GGGCTTGGTGTCGTCGGCTCTGTCGGGATGGGCGCAGACGAAGGGACAAC
AGGGCGTGCCAGCTAGTGAGGCGGTGGTCATTTTTGCTACGCAGCCGTTG
TGGGCTAGTGCACTTGCGGCTGTTTTGCTCGGCGAGAGCTTTGGACCGCG
TGGCTTGGCGGGTGGCGCTCTTATCATTGCGGCAACGTTGATTGCCAGCA
GAAAAGGGCAACGGGAGGAGGACGAGGAGAAGCAAACGTGA

protein sequence of Gcaud3455.t1

>Gcaud3455.t1 ID=Gcaud3455.t1|Name=Gcaud3455.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=447bp
MRAVTQSASFVAPQSLPSSFPRRAQALVYKRRRTPAPLHVVVHRRRVAPS
LSLHGDEPQQSATQPLAQPSVEDASRPVDHSPASANGVSSNVTSTHNTQS
TRRTTSSSQRSALQISLGPVNLSVPPRWLLFTVPLMWGSFAPAVRLLYSQ
EPHQDPAIFNSERLLLSTIIYVPILLSEARAFLTRNQSSPDARNRFSFFP
AGIELGVYVFLANVAQVIGLQQTSASRAAFLVQLQTVIVPVMAGVFGNAN
IPISTWASSVVAVTGVALLSSDKGHGTVASLSGDALEVLSALFFSLYVFR
LEKYCNSVAANPLVATKIAVQALLSIGWALFAQVGSNIVHAPSDAPPHVV
TWTVSAVAINALIVAWTGLVSSALSGWAQTKGQQGVPASEAVVIFATQPL
WASALAAVLLGESFGPRGLAGGALIIAATLIASRKGQREEDEEKQT*

mRNA from alignment at NODE_133_length_45383_cov_4.895280:794..2134+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3455.t1 ID=Gcaud3455.t1|Name=Gcaud3455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:794..2134+ (Gracilaria caudata M_176_S67 male)
ATGCGCGCTGTGACGCAGAGCGCCTCCTTCGTCGCGCCGCAGTCACTTCC
CTCATCTTTTCCGCGTCGCGCGCAGGCGCTCGTGTACAAGcgtcgtcgta
cacccgcgccgttgcacgtggtcgtgcatcgccgtcgcgtcgcGCCCTCG
CTTTCGCTTCACGGTGACGAGCCACAACAATCCGCCACACAGCCGCTCGC
ACAGCCTTCCGTCGAAGATGCCTCGCGTCCCGTCGATCACAGCCCCGCAT
CCGCAAACGGCGTATCTTCCAACGTCACATCCACCCACAACACGCAATCC
ACTCGTCGCACCACCTCGTCGTCACAACGCTCTGCGCTCCAAATTTCGCT
AGGCCCGGTAAACCTGTCCGTACCACCACGATGGTTATTGTTCACCGTGC
CGCTTATGTGGGGTTCATTCGCCCCCGCCGTCCGTCTGCTGTACTCTCAA
GAGCCGCATCAAGATCCCGCCATATTCAATTCGGAGCGTCTCCTATTGTC
CACCATCATCTATGTACCCATTCTCTTGTCCGAGGCGCGTGCATTTCTCA
CTCGCAACCAATCCTCCCCCGACGCTCGCAATCGCTTTTCGTTTTTTCCG
GCGGGCATTGAGCTCGGCGTGTATGTATTTCTGGCCAATGTTGCACAAGT
CATTGGTTTACAACAGACCAGTGCCAGCCGCGCCGCTTTTCTCGTTCAAT
TACAAACGGTGATAGTGCCAGTTATGGCCGGCGTATTTGGCAACGCCAAC
ATCCCAATCTCCACGTGGGCGTCGTCTGTTGTGGCCGTCACGGGTGTGGC
TTTGCTCAGTTCGGACAAGGGACACGGTACCGTCGCCTCTCTATCCGGCG
ATGCATTGGAAGTACTTTCCGCACTCTTCTTTTCCCTGTATGTGTTCAGA
TTAGAAAAGTATTGCAACAGCGTAGCCGCCAACCCGTTGGTGGCCACCAA
GATCGCCGTACAGGCACTTTTGTCTATTGGCTGGGCGCTCTTTGCTCAGG
TCGGCTCAAACATTGTGCACGCACCCTCCGATGCACCGCCACACGTCGTG
ACGTGGACTGTGAGCGCTGTCGCGATTAACGCGCTCATTGTGGCGTGGAC
GGGCTTGGTGTCGTCGGCTCTGTCGGGATGGGCGCAGACGAAGGGACAAC
AGGGCGTGCCAGCTAGTGAGGCGGTGGTCATTTTTGCTACGCAGCCGTTG
TGGGCTAGTGCACTTGCGGCTGTTTTGCTCGGCGAGAGCTTTGGACCGCG
TGGCTTGGCGGGTGGCGCTCTTATCATTGCGGCAACGTTGATTGCCAGCA
GAAAAGGGCAACGGGAGGAGGACGAGGAGAAGCAAACGTGA

Coding sequence (CDS) from alignment at NODE_133_length_45383_cov_4.895280:794..2134+

>Gcaud3455.t1 ID=Gcaud3455.t1|Name=Gcaud3455.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1341bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:794..2134+ (Gracilaria caudata M_176_S67 male)
ATGCGCGCTGTGACGCAGAGCGCCTCCTTCGTCGCGCCGCAGTCACTTCC
CTCATCTTTTCCGCGTCGCGCGCAGGCGCTCGTGTACAAGcgtcgtcgta
cacccgcgccgttgcacgtggtcgtgcatcgccgtcgcgtcgcGCCCTCG
CTTTCGCTTCACGGTGACGAGCCACAACAATCCGCCACACAGCCGCTCGC
ACAGCCTTCCGTCGAAGATGCCTCGCGTCCCGTCGATCACAGCCCCGCAT
CCGCAAACGGCGTATCTTCCAACGTCACATCCACCCACAACACGCAATCC
ACTCGTCGCACCACCTCGTCGTCACAACGCTCTGCGCTCCAAATTTCGCT
AGGCCCGGTAAACCTGTCCGTACCACCACGATGGTTATTGTTCACCGTGC
CGCTTATGTGGGGTTCATTCGCCCCCGCCGTCCGTCTGCTGTACTCTCAA
GAGCCGCATCAAGATCCCGCCATATTCAATTCGGAGCGTCTCCTATTGTC
CACCATCATCTATGTACCCATTCTCTTGTCCGAGGCGCGTGCATTTCTCA
CTCGCAACCAATCCTCCCCCGACGCTCGCAATCGCTTTTCGTTTTTTCCG
GCGGGCATTGAGCTCGGCGTGTATGTATTTCTGGCCAATGTTGCACAAGT
CATTGGTTTACAACAGACCAGTGCCAGCCGCGCCGCTTTTCTCGTTCAAT
TACAAACGGTGATAGTGCCAGTTATGGCCGGCGTATTTGGCAACGCCAAC
ATCCCAATCTCCACGTGGGCGTCGTCTGTTGTGGCCGTCACGGGTGTGGC
TTTGCTCAGTTCGGACAAGGGACACGGTACCGTCGCCTCTCTATCCGGCG
ATGCATTGGAAGTACTTTCCGCACTCTTCTTTTCCCTGTATGTGTTCAGA
TTAGAAAAGTATTGCAACAGCGTAGCCGCCAACCCGTTGGTGGCCACCAA
GATCGCCGTACAGGCACTTTTGTCTATTGGCTGGGCGCTCTTTGCTCAGG
TCGGCTCAAACATTGTGCACGCACCCTCCGATGCACCGCCACACGTCGTG
ACGTGGACTGTGAGCGCTGTCGCGATTAACGCGCTCATTGTGGCGTGGAC
GGGCTTGGTGTCGTCGGCTCTGTCGGGATGGGCGCAGACGAAGGGACAAC
AGGGCGTGCCAGCTAGTGAGGCGGTGGTCATTTTTGCTACGCAGCCGTTG
TGGGCTAGTGCACTTGCGGCTGTTTTGCTCGGCGAGAGCTTTGGACCGCG
TGGCTTGGCGGGTGGCGCTCTTATCATTGCGGCAACGTTGATTGCCAGCA
GAAAAGGGCAACGGGAGGAGGACGAGGAGAAGCAAACGTGA