Gcaud3459.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3459.t1
Unique Name	Gcaud3459.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_133_length_45383_cov_4.895280	contig	NODE_133_length_45383_cov_4.895280:14010..15479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_5989
Preferred name	amgP
PFAMs	APH
Max annot lvl	2\|Bacteria
Evalue	5.55e-13
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria
Description	very-long-chain-acyl-CoA dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3459	Gcaud3459	Gracilaria caudata M_176_S67 male	gene	NODE_133_length_45383_cov_4.895280 14010..15479 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3459.t1.start1	Gcaud3459.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_133_length_45383_cov_4.895280 14010..14012 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3459.t1.CDS1	Gcaud3459.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_133_length_45383_cov_4.895280 14010..15479 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3459.t1.exon1	Gcaud3459.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_133_length_45383_cov_4.895280 14010..15479 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3459.t1.stop1	Gcaud3459.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_133_length_45383_cov_4.895280 15477..15479 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3459.t1	Gcaud3459.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_133_length_45383_cov_4.895280 14010..15479 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_133_length_45383_cov_4.895280:14010..15479+
coding sequence from alignment at NODE_133_length_45383_cov_4.895280:14010..15479+

mRNA sequence

>Gcaud3459.t1 ID=Gcaud3459.t1|Name=Gcaud3459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=490bp
MADFANVDLRQLKRDEWSWDTCITNDFQELQAFIVSFKHKKVLLKQEEGR
FVLPGCLYYRNDFPSAFKPVCIIPDVQEMIDCNLSLIFLRQLWRRVRTVV
VDRHHRDYEKVVVLLEFTDRLHSNTIVLPSSEGNQLFRWIPVEEAKVFHM
INEAQKSIGMEIKRIAAGVEPQNRLSWQRRGWFGVATSWMKHQLSTVCET
SLTDDIIQLRSSHLGVILTANTTKGPFFLKCTCAESNDASFTRTLARLSP
SHVKSPVAVDTDKQLLLTANYGEVLDPWDLCENEKRLLTSNYAHFQMDTM
NSVRELIIAGFPDMRIPRLLERLERLESCSFFSALGKFDERAEREVEFFR
SCRQEIETELGKLETSPKLAATVTHNDLFSSNMYWNVDAEKYMFFDFVDS
YISHPFACDMESMDEKQYLTEWSAKTGATTQELEKFISPGYISHLLAVLV
LRLEEAQRAEFPESEQSLEEACSALLFLNSTMPGWKAPE*

spliced messenger RNA

>Gcaud3459.t1 ID=Gcaud3459.t1|Name=Gcaud3459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:14010..15479+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACTTCGCGAACGTTGATCTCAGGCAACTGAAGCGGGACGAATG
GTCATGGGACACTTGCATTACGAACGATTTTCAGGAGCTTCAAGCCTTTA
TTGTATCTTTCAAGCACAAGAAAGTTCTGCTCAAACAGGAAGAAGGCCGC
TTTGTGCTTCCCGGTTGCCTGTACTATCGTAACGATTTCCCATCGGCCTT
TAAACCTGTATGCATAATACCGGATGTCCAAGAGATGATCGACTGCAACT
TATCGCTCATTTTCCTTCGCCAACTGTGGAGGAGAGTGAGAACTGTGGTT
GTCGACCGCCATCATAGAGATTACGAGAAAGTTGTAGTGCTGCTAGAGTT
CACGGACCGCCTACATTCAAATACTATCGTCTTGCCCTCCTCTGAAGGTA
ATCAACTGTTTCGCTGGATCCCGGTAGAAGAAGCGAAAGTTTTTCACATG
ATAAATGAGGCGCAAAAATCAATTGGGATGGAGATAAAGCGCATTGCAGC
AGGCGTTGAACCACAAAATCGCCTATCATGGCAACGTCGGGGATGGTTTG
GCGTGGCTACATCGTGGATGAAGCATCAACTTTCAACAGTCTGCGAGACT
TCGCTCACCGACGATATCATTCAACTCCGATCCTCACATCTTGGCGTCAT
TTTGACAGCGAACACCACAAAGGGGCCTTTTTTCCTCAAGTGTACCTGTG
CTGAAAGCAACGACGCTTCTTTTACAAGAACACTTGCTCGTTTATCACCG
TCTCATGTGAAATCCCCTGTAGCTGTGGACACTGACAAACAGCTGCTACT
CACAGCTAACTATGGTGAAGTGTTAGACCCGTGGGACCTGTGCGAAAACG
AGAAACGTCTTCTCACTTCCAACTACGCACACTTTCAAATGGATACAATG
AACAGTGTACGAGAGCTCATTATCGCTGGGTTTCCAGATATGAGGATTCC
AAGACTTTTAGAGCGTTTGGAACGATTAGAAAGCTGCTCGTTTTTTAGTG
CACTGGGCAAGTTCGACGAAAGGGCTGAGAGGGAAGTAGAATTCTTCAGA
AGCTGCAGACAAGAGATTGAGACGGAATTAGGAAAACTAGAGACTTCACC
AAAACTCGCAGCAACCGTAACGCACAACGACTTGTTCAGTTCTAACATGT
ACTGGAATGTTGATGCAGAGAAGTACATGTTTTTTGATTTCGTGGATAGC
TATATTAGCCATCCGTTTGCATGTGATATGGAAAGCATGGACGAGAAGCA
GTATTTGACAGAGTGGAGTGCAAAGACGGGCGCGACAACGCAGGAGCTCG
AGAAGTTCATTTCTCCGGGCTACATTAGTCATCTATTAGCAGTACTTGTG
TTACGGTTGGAAGAGGCGCAGCGTGCGGAATTTCCAGAGTCAGAGCAAAG
CCTTGAGGAAGCGTGCAGTGCGCTACTCTTCTTAAACAGTACCATGCCAG
GTTGGAAGGCTCCCGAGTAG

protein sequence of Gcaud3459.t1

>Gcaud3459.t1 ID=Gcaud3459.t1|Name=Gcaud3459.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=490bp
MADFANVDLRQLKRDEWSWDTCITNDFQELQAFIVSFKHKKVLLKQEEGR
FVLPGCLYYRNDFPSAFKPVCIIPDVQEMIDCNLSLIFLRQLWRRVRTVV
VDRHHRDYEKVVVLLEFTDRLHSNTIVLPSSEGNQLFRWIPVEEAKVFHM
INEAQKSIGMEIKRIAAGVEPQNRLSWQRRGWFGVATSWMKHQLSTVCET
SLTDDIIQLRSSHLGVILTANTTKGPFFLKCTCAESNDASFTRTLARLSP
SHVKSPVAVDTDKQLLLTANYGEVLDPWDLCENEKRLLTSNYAHFQMDTM
NSVRELIIAGFPDMRIPRLLERLERLESCSFFSALGKFDERAEREVEFFR
SCRQEIETELGKLETSPKLAATVTHNDLFSSNMYWNVDAEKYMFFDFVDS
YISHPFACDMESMDEKQYLTEWSAKTGATTQELEKFISPGYISHLLAVLV
LRLEEAQRAEFPESEQSLEEACSALLFLNSTMPGWKAPE*

mRNA from alignment at NODE_133_length_45383_cov_4.895280:14010..15479+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3459.t1 ID=Gcaud3459.t1|Name=Gcaud3459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:14010..15479+ (Gracilaria caudata M_176_S67 male)
ATGGCCGACTTCGCGAACGTTGATCTCAGGCAACTGAAGCGGGACGAATG
GTCATGGGACACTTGCATTACGAACGATTTTCAGGAGCTTCAAGCCTTTA
TTGTATCTTTCAAGCACAAGAAAGTTCTGCTCAAACAGGAAGAAGGCCGC
TTTGTGCTTCCCGGTTGCCTGTACTATCGTAACGATTTCCCATCGGCCTT
TAAACCTGTATGCATAATACCGGATGTCCAAGAGATGATCGACTGCAACT
TATCGCTCATTTTCCTTCGCCAACTGTGGAGGAGAGTGAGAACTGTGGTT
GTCGACCGCCATCATAGAGATTACGAGAAAGTTGTAGTGCTGCTAGAGTT
CACGGACCGCCTACATTCAAATACTATCGTCTTGCCCTCCTCTGAAGGTA
ATCAACTGTTTCGCTGGATCCCGGTAGAAGAAGCGAAAGTTTTTCACATG
ATAAATGAGGCGCAAAAATCAATTGGGATGGAGATAAAGCGCATTGCAGC
AGGCGTTGAACCACAAAATCGCCTATCATGGCAACGTCGGGGATGGTTTG
GCGTGGCTACATCGTGGATGAAGCATCAACTTTCAACAGTCTGCGAGACT
TCGCTCACCGACGATATCATTCAACTCCGATCCTCACATCTTGGCGTCAT
TTTGACAGCGAACACCACAAAGGGGCCTTTTTTCCTCAAGTGTACCTGTG
CTGAAAGCAACGACGCTTCTTTTACAAGAACACTTGCTCGTTTATCACCG
TCTCATGTGAAATCCCCTGTAGCTGTGGACACTGACAAACAGCTGCTACT
CACAGCTAACTATGGTGAAGTGTTAGACCCGTGGGACCTGTGCGAAAACG
AGAAACGTCTTCTCACTTCCAACTACGCACACTTTCAAATGGATACAATG
AACAGTGTACGAGAGCTCATTATCGCTGGGTTTCCAGATATGAGGATTCC
AAGACTTTTAGAGCGTTTGGAACGATTAGAAAGCTGCTCGTTTTTTAGTG
CACTGGGCAAGTTCGACGAAAGGGCTGAGAGGGAAGTAGAATTCTTCAGA
AGCTGCAGACAAGAGATTGAGACGGAATTAGGAAAACTAGAGACTTCACC
AAAACTCGCAGCAACCGTAACGCACAACGACTTGTTCAGTTCTAACATGT
ACTGGAATGTTGATGCAGAGAAGTACATGTTTTTTGATTTCGTGGATAGC
TATATTAGCCATCCGTTTGCATGTGATATGGAAAGCATGGACGAGAAGCA
GTATTTGACAGAGTGGAGTGCAAAGACGGGCGCGACAACGCAGGAGCTCG
AGAAGTTCATTTCTCCGGGCTACATTAGTCATCTATTAGCAGTACTTGTG
TTACGGTTGGAAGAGGCGCAGCGTGCGGAATTTCCAGAGTCAGAGCAAAG
CCTTGAGGAAGCGTGCAGTGCGCTACTCTTCTTAAACAGTACCATGCCAG
GTTGGAAGGCTCCCGAGTAG

Coding sequence (CDS) from alignment at NODE_133_length_45383_cov_4.895280:14010..15479+

>Gcaud3459.t1 ID=Gcaud3459.t1|Name=Gcaud3459.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1470bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:14010..15479+ (Gracilaria caudata M_176_S67 male)
ATGGCCGACTTCGCGAACGTTGATCTCAGGCAACTGAAGCGGGACGAATG
GTCATGGGACACTTGCATTACGAACGATTTTCAGGAGCTTCAAGCCTTTA
TTGTATCTTTCAAGCACAAGAAAGTTCTGCTCAAACAGGAAGAAGGCCGC
TTTGTGCTTCCCGGTTGCCTGTACTATCGTAACGATTTCCCATCGGCCTT
TAAACCTGTATGCATAATACCGGATGTCCAAGAGATGATCGACTGCAACT
TATCGCTCATTTTCCTTCGCCAACTGTGGAGGAGAGTGAGAACTGTGGTT
GTCGACCGCCATCATAGAGATTACGAGAAAGTTGTAGTGCTGCTAGAGTT
CACGGACCGCCTACATTCAAATACTATCGTCTTGCCCTCCTCTGAAGGTA
ATCAACTGTTTCGCTGGATCCCGGTAGAAGAAGCGAAAGTTTTTCACATG
ATAAATGAGGCGCAAAAATCAATTGGGATGGAGATAAAGCGCATTGCAGC
AGGCGTTGAACCACAAAATCGCCTATCATGGCAACGTCGGGGATGGTTTG
GCGTGGCTACATCGTGGATGAAGCATCAACTTTCAACAGTCTGCGAGACT
TCGCTCACCGACGATATCATTCAACTCCGATCCTCACATCTTGGCGTCAT
TTTGACAGCGAACACCACAAAGGGGCCTTTTTTCCTCAAGTGTACCTGTG
CTGAAAGCAACGACGCTTCTTTTACAAGAACACTTGCTCGTTTATCACCG
TCTCATGTGAAATCCCCTGTAGCTGTGGACACTGACAAACAGCTGCTACT
CACAGCTAACTATGGTGAAGTGTTAGACCCGTGGGACCTGTGCGAAAACG
AGAAACGTCTTCTCACTTCCAACTACGCACACTTTCAAATGGATACAATG
AACAGTGTACGAGAGCTCATTATCGCTGGGTTTCCAGATATGAGGATTCC
AAGACTTTTAGAGCGTTTGGAACGATTAGAAAGCTGCTCGTTTTTTAGTG
CACTGGGCAAGTTCGACGAAAGGGCTGAGAGGGAAGTAGAATTCTTCAGA
AGCTGCAGACAAGAGATTGAGACGGAATTAGGAAAACTAGAGACTTCACC
AAAACTCGCAGCAACCGTAACGCACAACGACTTGTTCAGTTCTAACATGT
ACTGGAATGTTGATGCAGAGAAGTACATGTTTTTTGATTTCGTGGATAGC
TATATTAGCCATCCGTTTGCATGTGATATGGAAAGCATGGACGAGAAGCA
GTATTTGACAGAGTGGAGTGCAAAGACGGGCGCGACAACGCAGGAGCTCG
AGAAGTTCATTTCTCCGGGCTACATTAGTCATCTATTAGCAGTACTTGTG
TTACGGTTGGAAGAGGCGCAGCGTGCGGAATTTCCAGAGTCAGAGCAAAG
CCTTGAGGAAGCGTGCAGTGCGCTACTCTTCTTAAACAGTACCATGCCAG
GTTGGAAGGCTCCCGAGTAG