Gcaud2965.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2965.t1
Unique Name	Gcaud2965.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	494

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1306_length_11577_cov_4.914853	contig	NODE_1306_length_11577_cov_4.914853:7913..9394 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2965	Gcaud2965	Gracilaria caudata M_176_S67 male	gene	NODE_1306_length_11577_cov_4.914853 7913..9394 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2965.t1.start1	Gcaud2965.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1306_length_11577_cov_4.914853 7913..7915 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2965.t1.CDS1	Gcaud2965.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1306_length_11577_cov_4.914853 7913..9394 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2965.t1.exon1	Gcaud2965.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1306_length_11577_cov_4.914853 7913..9394 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2965.t1.stop1	Gcaud2965.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1306_length_11577_cov_4.914853 9392..9394 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2965.t1	Gcaud2965.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1306_length_11577_cov_4.914853 7913..9394 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1306_length_11577_cov_4.914853:7913..9394+
coding sequence from alignment at NODE_1306_length_11577_cov_4.914853:7913..9394+

mRNA sequence

>Gcaud2965.t1 ID=Gcaud2965.t1|Name=Gcaud2965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=494bp
MLLSIHYNNIGEKARSMISSAVQNVNNSKPKNWTSKHSYLVFVHFVVVLL
VFRGAHKFQRRTGAIYPMLTSSRQHFLSAVRPYSSLNEVDRQLAGTDYLQ
APQLHKSHVDALRVLVDDYIQFHKRNRHNATRILIYRPRRTGLGDRLNVL
AFAFWAASVSQRLFLVDWQYPFPLTQLLQNANSDVDLFFSQQTDDPKNET
LSGNSSSKVVYLKPDTKGLKEYESTILSKVRVVIIETHYHVPHLPKAFIE
KRFPAGVLPSYVNGVASTITFLRIVYHHVFKLSNEMLQHQKHMSESMRIR
PIFPSHLQTSTVNKSSEGLGSIVEEFDESARPYIAVHARVGTGVGEAKGA
RFLDISGDMKTGALCLASRAVRLAHMSGNPPLPIYLATDTPSFRTIFREV
VANFSHGRVEVVGGDWDVMHINAFTLPDDSGVVRTPKQQKALRDMFVDFV
MLGHAEHMIALYSSFPRMAQGVGTARTLTELRNEVCFKVEKWK*

spliced messenger RNA

>Gcaud2965.t1 ID=Gcaud2965.t1|Name=Gcaud2965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at NODE_1306_length_11577_cov_4.914853:7913..9394+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTCTCAATCCACTACAACAATATAGGTGAAAAGGCTCGATCGAT
GATATCTTCGGCAGTTCAGAATGTCAACAACTCTAAACCGAAGAACTGGA
CTTCGAAGCACTCTTATCTTGTGTTCGTTCACTTTGTAGTGGTGCTCTTG
GTGTTTCGAGGTGCGCACAAGTTCCAAAGAAGGACCGGCGCCATCTATCC
CATGCTCACCTCATCAAGACAGCATTTTCTCAGCGCTGTTCGTCCATACA
GCTCTCTTAATGAGGTGGACAGACAATTGGCTGGAACCGATTACTTGCAA
GCCCCACAGCTACACAAAAGCCATGTTGATGCTCTTCGTGTGTTGGTGGA
CGACTACATCCAATTTCACAAACGGAACAGGCATAATGCAACGCGAATCC
TCATCTACAGACCGCGACGAACTGGTTTGGGCGACCGCCTTAATGTTCTG
GCGTTTGCGTTTTGGGCTGCTTCTGTTTCTCAGCGTCTGTTTCTTGTTGA
CTGGCAATACCCCTTTCCCCTCACCCAACTTCTTCAGAACGCGAACTCCG
ATGTTGACTTGTTCTTCAGTCAACAAACGGACGATCCTAAGAATGAAACG
CTCAGCGGAAATTCGTCTTCAAAGGTTGTGTACCTAAAGCCAGACACGAA
AGGACTGAAGGAATATGAATCCACGATTTTGTCAAAGGTGAGAGTGGTAA
TCATCGAAACGCATTACCATGTACCACACCTACCGAAGGCTTTCATTGAG
AAGAGATTCCCCGCGGGAGTGCTTCCATCATACGTGAACGGCGTGGCCTC
AACGATCACCTTCCTCCGTATCGTGTACCATCACGTGTTCAAGTTGAGCA
ATGAAATGCTTCAACATCAAAAACATATGAGTGAAAGCATGAGAATCAGA
CCTATTTTCCCCTCTCATCTACAAACGTCAACAGTGAACAAGAGCTCAGA
AGGTTTGGGCAGTATTGTCGAAGAGTTTGATGAAAGCGCGCGTCCGTACA
TCGCGGTACATGCAAGAGTGGGTACCGGAGTGGGAGAAGCAAAAGGCGCT
CGATTTCTGGATATCAGCGGAGACATGAAGACCGGGGCACTGTGTCTGGC
TTCAAGGGCTGTGAGATTGGCGCACATGTCGGGAAATCCACCGCTTCCAA
TCTACTTGGCCACCGATACACCGTCATTTAGAACCATTTTCCGGGAGGTT
GTCGCAAACTTCAGTCATGGACGCGTTGAAGTCGTCGGTGGAGATTGGGA
TGTGATGCATATCAATGCGTTTACGCTTCCAGACGATTCGGGTGTGGTGC
GAACACCCAAGCAGCAAAAGGCGTTGCGAGATATGTTTGTGGATTTTGTG
ATGCTAGGTCATGCTGAACATATGATCGCGCTGTACAGTTCTTTTCCTCG
CATGGCGCAAGGAGTGGGAACGGCGCGGACGTTGACCGAGTTGCGTAACG
AAGTGTGTTTCAAGGTGGAGAAGTGGAAGTGA

protein sequence of Gcaud2965.t1

>Gcaud2965.t1 ID=Gcaud2965.t1|Name=Gcaud2965.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=494bp
MLLSIHYNNIGEKARSMISSAVQNVNNSKPKNWTSKHSYLVFVHFVVVLL
VFRGAHKFQRRTGAIYPMLTSSRQHFLSAVRPYSSLNEVDRQLAGTDYLQ
APQLHKSHVDALRVLVDDYIQFHKRNRHNATRILIYRPRRTGLGDRLNVL
AFAFWAASVSQRLFLVDWQYPFPLTQLLQNANSDVDLFFSQQTDDPKNET
LSGNSSSKVVYLKPDTKGLKEYESTILSKVRVVIIETHYHVPHLPKAFIE
KRFPAGVLPSYVNGVASTITFLRIVYHHVFKLSNEMLQHQKHMSESMRIR
PIFPSHLQTSTVNKSSEGLGSIVEEFDESARPYIAVHARVGTGVGEAKGA
RFLDISGDMKTGALCLASRAVRLAHMSGNPPLPIYLATDTPSFRTIFREV
VANFSHGRVEVVGGDWDVMHINAFTLPDDSGVVRTPKQQKALRDMFVDFV
MLGHAEHMIALYSSFPRMAQGVGTARTLTELRNEVCFKVEKWK*

mRNA from alignment at NODE_1306_length_11577_cov_4.914853:7913..9394+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2965.t1 ID=Gcaud2965.t1|Name=Gcaud2965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at NODE_1306_length_11577_cov_4.914853:7913..9394+ (Gracilaria caudata M_176_S67 male)
ATGCTTCTCTCAATCCACTACAACAATATAGGTGAAAAGGCTCGATCGAT
GATATCTTCGGCAGTTCAGAATGTCAACAACTCTAAACCGAAGAACTGGA
CTTCGAAGCACTCTTATCTTGTGTTCGTTCACTTTGTAGTGGTGCTCTTG
GTGTTTCGAGGTGCGCACAAGTTCCAAAGAAGGACCGGCGCCATCTATCC
CATGCTCACCTCATCAAGACAGCATTTTCTCAGCGCTGTTCGTCCATACA
GCTCTCTTAATGAGGTGGACAGACAATTGGCTGGAACCGATTACTTGCAA
GCCCCACAGCTACACAAAAGCCATGTTGATGCTCTTCGTGTGTTGGTGGA
CGACTACATCCAATTTCACAAACGGAACAGGCATAATGCAACGCGAATCC
TCATCTACAGACCGCGACGAACTGGTTTGGGCGACCGCCTTAATGTTCTG
GCGTTTGCGTTTTGGGCTGCTTCTGTTTCTCAGCGTCTGTTTCTTGTTGA
CTGGCAATACCCCTTTCCCCTCACCCAACTTCTTCAGAACGCGAACTCCG
ATGTTGACTTGTTCTTCAGTCAACAAACGGACGATCCTAAGAATGAAACG
CTCAGCGGAAATTCGTCTTCAAAGGTTGTGTACCTAAAGCCAGACACGAA
AGGACTGAAGGAATATGAATCCACGATTTTGTCAAAGGTGAGAGTGGTAA
TCATCGAAACGCATTACCATGTACCACACCTACCGAAGGCTTTCATTGAG
AAGAGATTCCCCGCGGGAGTGCTTCCATCATACGTGAACGGCGTGGCCTC
AACGATCACCTTCCTCCGTATCGTGTACCATCACGTGTTCAAGTTGAGCA
ATGAAATGCTTCAACATCAAAAACATATGAGTGAAAGCATGAGAATCAGA
CCTATTTTCCCCTCTCATCTACAAACGTCAACAGTGAACAAGAGCTCAGA
AGGTTTGGGCAGTATTGTCGAAGAGTTTGATGAAAGCGCGCGTCCGTACA
TCGCGGTACATGCAAGAGTGGGTACCGGAGTGGGAGAAGCAAAAGGCGCT
CGATTTCTGGATATCAGCGGAGACATGAAGACCGGGGCACTGTGTCTGGC
TTCAAGGGCTGTGAGATTGGCGCACATGTCGGGAAATCCACCGCTTCCAA
TCTACTTGGCCACCGATACACCGTCATTTAGAACCATTTTCCGGGAGGTT
GTCGCAAACTTCAGTCATGGACGCGTTGAAGTCGTCGGTGGAGATTGGGA
TGTGATGCATATCAATGCGTTTACGCTTCCAGACGATTCGGGTGTGGTGC
GAACACCCAAGCAGCAAAAGGCGTTGCGAGATATGTTTGTGGATTTTGTG
ATGCTAGGTCATGCTGAACATATGATCGCGCTGTACAGTTCTTTTCCTCG
CATGGCGCAAGGAGTGGGAACGGCGCGGACGTTGACCGAGTTGCGTAACG
AAGTGTGTTTCAAGGTGGAGAAGTGGAAGTGA

Coding sequence (CDS) from alignment at NODE_1306_length_11577_cov_4.914853:7913..9394+

>Gcaud2965.t1 ID=Gcaud2965.t1|Name=Gcaud2965.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1482bp|location=Sequence derived from alignment at NODE_1306_length_11577_cov_4.914853:7913..9394+ (Gracilaria caudata M_176_S67 male)
ATGCTTCTCTCAATCCACTACAACAATATAGGTGAAAAGGCTCGATCGAT
GATATCTTCGGCAGTTCAGAATGTCAACAACTCTAAACCGAAGAACTGGA
CTTCGAAGCACTCTTATCTTGTGTTCGTTCACTTTGTAGTGGTGCTCTTG
GTGTTTCGAGGTGCGCACAAGTTCCAAAGAAGGACCGGCGCCATCTATCC
CATGCTCACCTCATCAAGACAGCATTTTCTCAGCGCTGTTCGTCCATACA
GCTCTCTTAATGAGGTGGACAGACAATTGGCTGGAACCGATTACTTGCAA
GCCCCACAGCTACACAAAAGCCATGTTGATGCTCTTCGTGTGTTGGTGGA
CGACTACATCCAATTTCACAAACGGAACAGGCATAATGCAACGCGAATCC
TCATCTACAGACCGCGACGAACTGGTTTGGGCGACCGCCTTAATGTTCTG
GCGTTTGCGTTTTGGGCTGCTTCTGTTTCTCAGCGTCTGTTTCTTGTTGA
CTGGCAATACCCCTTTCCCCTCACCCAACTTCTTCAGAACGCGAACTCCG
ATGTTGACTTGTTCTTCAGTCAACAAACGGACGATCCTAAGAATGAAACG
CTCAGCGGAAATTCGTCTTCAAAGGTTGTGTACCTAAAGCCAGACACGAA
AGGACTGAAGGAATATGAATCCACGATTTTGTCAAAGGTGAGAGTGGTAA
TCATCGAAACGCATTACCATGTACCACACCTACCGAAGGCTTTCATTGAG
AAGAGATTCCCCGCGGGAGTGCTTCCATCATACGTGAACGGCGTGGCCTC
AACGATCACCTTCCTCCGTATCGTGTACCATCACGTGTTCAAGTTGAGCA
ATGAAATGCTTCAACATCAAAAACATATGAGTGAAAGCATGAGAATCAGA
CCTATTTTCCCCTCTCATCTACAAACGTCAACAGTGAACAAGAGCTCAGA
AGGTTTGGGCAGTATTGTCGAAGAGTTTGATGAAAGCGCGCGTCCGTACA
TCGCGGTACATGCAAGAGTGGGTACCGGAGTGGGAGAAGCAAAAGGCGCT
CGATTTCTGGATATCAGCGGAGACATGAAGACCGGGGCACTGTGTCTGGC
TTCAAGGGCTGTGAGATTGGCGCACATGTCGGGAAATCCACCGCTTCCAA
TCTACTTGGCCACCGATACACCGTCATTTAGAACCATTTTCCGGGAGGTT
GTCGCAAACTTCAGTCATGGACGCGTTGAAGTCGTCGGTGGAGATTGGGA
TGTGATGCATATCAATGCGTTTACGCTTCCAGACGATTCGGGTGTGGTGC
GAACACCCAAGCAGCAAAAGGCGTTGCGAGATATGTTTGTGGATTTTGTG
ATGCTAGGTCATGCTGAACATATGATCGCGCTGTACAGTTCTTTTCCTCG
CATGGCGCAAGGAGTGGGAACGGCGCGGACGTTGACCGAGTTGCGTAACG
AAGTGTGTTTCAAGGTGGAGAAGTGGAAGTGA