Gcaud1954.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1954.t1
Unique Name	Gcaud1954.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	421

Homology

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BLAST of Gcaud1954.t1 vs. uniprot
Match: A0A2V3IVD8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVD8_9FLOR)

HSP 1 Score: 457 bits (1176), Expect = 2.370e-156
Identity = 256/418 (61.24%), Postives = 306/418 (73.21%), Query Frame = 0

Query:    1 MLAYDARAIP----LPPLRRIHRAPTRHTVIHLVRSPDVNLSSTNLILIARTDACSIPLIVSAIRRYLLPTRTRRIHDVSHPLQLLYKLVLCVPYFYRYIASPAFFRQFWRLGTDVDASSSTLSAPLLLAAWARDLRKMARRNDPAATFWYVTARNMSKEQRLPRVPHKSFVYPVTTNILNRIAAPLTFLTHDETKRTLRLINQMN---NGSNARWRRASRFVSSLSTSSSLSXXXXXXXXXXXXXXXXXXXXXTPAPPARRACQEMSDKFLAVKRRHDQVACMRSRHADDLLLSDTSLATLGATSHSSGVLRLSEKLKLCCDGGNCCVCVDEYFLDERHGITPSSFADLFVDGP----LERRGAEEKIERQVLEAVESVGNTIKLPSNVDLEALHAKFRQAAAAATAKRSRGAFRAS 407
            MLAYDARAIP    LPPLRR  RAPTRHTV HLVRS +V LS+T+LILIARTD  SIP IV+AIRRYLLP RTRR+ + +HPL+LL+KLV CVPYFYRY+ASP FFRQFWRL    + +  T SA LLLAAWARDLRKMARR+DPAA FW++TARN+ K+ RLPRVPH  FVYPVT NILNRIAAP+ FL  DE+KRT+RL+  MN    GS     R  R VSS + SS+LS                      P P  RR C E+S+KFLAVK+RHDQVACMRS +A++LL SD SLATL   S SS  + +S K ++CC+G   CVC DE  LDER+GITPSSFA+LFVDG      E +  + +IE+QVL+AVES+G+TIKLPS VD EAL A+++QAAAAA A+RS+ + R+S
Sbjct:    9 MLAYDARAIPGLPSLPPLRRPPRAPTRHTVNHLVRSSEVELSATHLILIARTDPSSIPFIVAAIRRYLLPARTRRVTNAAHPLRLLHKLVQCVPYFYRYVASPGFFRQFWRLNDVAEPAPPTPSAALLLAAWARDLRKMARRDDPAAVFWHMTARNIGKQVRLPRVPHDKFVYPVTANILNRIAAPVPFLNMDESKRTMRLMRHMNIRCRGSATS--RRPRAVSS-TCSSALSRLSSISMCVNMPNTQRCVSIPAPEPAERRGCHELSEKFLAVKKRHDQVACMRSSNAEELLWSDASLATLAGASTSSAAIMVSAKTRVCCEGRERCVCKDESLLDERYGITPSSFAELFVDGSELQEYEEQLEQWRIEQQVLDAVESIGDTIKLPSTVDYEALQARWKQAAAAAKARRSKLSLRSS 423

The following BLAST results are available for this feature:

BLAST of Gcaud1954.t1 vs. uniprot

BLAST of Gcaud1954.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IVD8_9FLOR	2.370e-156	61.24	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 61..80
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 81..102
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 42..60
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..41
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 103..113
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 114..129
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 130..420

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1304_length_11589_cov_5.861106	contig	NODE_1304_length_11589_cov_5.861106:1434..2696 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1954.t1	Gcaud1954.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1304_length_11589_cov_5.861106 1434..2696 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1954.t1 ID=Gcaud1954.t1|Name=Gcaud1954.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=421bp
MLAYDARAIPLPPLRRIHRAPTRHTVIHLVRSPDVNLSSTNLILIARTDA
CSIPLIVSAIRRYLLPTRTRRIHDVSHPLQLLYKLVLCVPYFYRYIASPA
FFRQFWRLGTDVDASSSTLSAPLLLAAWARDLRKMARRNDPAATFWYVTA
RNMSKEQRLPRVPHKSFVYPVTTNILNRIAAPLTFLTHDETKRTLRLINQ
MNNGSNARWRRASRFVSSLSTSSSLSRLSSTSMCVHIPNTQQCVSVPTPA
PPARRACQEMSDKFLAVKRRHDQVACMRSRHADDLLLSDTSLATLGATSH
SSGVLRLSEKLKLCCDGGNCCVCVDEYFLDERHGITPSSFADLFVDGPLE
RRGAEEKIERQVLEAVESVGNTIKLPSNVDLEALHAKFRQAAAAATAKRS
RGAFRASRRNSSLLGKVSGR*