Gcaud2255.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2255.t1
Unique Name	Gcaud2255.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1006_length_15184_cov_4.802690	contig	NODE_1006_length_15184_cov_4.802690:7049..8400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2255	Gcaud2255	Gracilaria caudata M_176_S67 male	gene	NODE_1006_length_15184_cov_4.802690 7049..8400 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2255.t1	Gcaud2255.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1006_length_15184_cov_4.802690 7049..8400 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2255.t1.start1	Gcaud2255.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1006_length_15184_cov_4.802690 7049..7051 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2255.t1.CDS1	Gcaud2255.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1006_length_15184_cov_4.802690 7049..8275 +
Gcaud2255.t1.CDS2	Gcaud2255.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1006_length_15184_cov_4.802690 8374..8400 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2255.t1.exon1	Gcaud2255.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1006_length_15184_cov_4.802690 7049..8275 +
Gcaud2255.t1.exon2	Gcaud2255.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1006_length_15184_cov_4.802690 8374..8400 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2255.t1.intron1	Gcaud2255.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1006_length_15184_cov_4.802690 8276..8373 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2255.t1.stop1	Gcaud2255.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1006_length_15184_cov_4.802690 8398..8400 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1006_length_15184_cov_4.802690:7049..8400+
coding sequence from alignment at NODE_1006_length_15184_cov_4.802690:7049..8400+

mRNA sequence

>Gcaud2255.t1 ID=Gcaud2255.t1|Name=Gcaud2255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=418bp
MHRSAFIVIVFSFYLSLYISVSEGINFRLISKSKKWQKRPSKKGITPLSS
EAKEAYSKIQLPKNVTFSHRQGLNFDYCETDFDCLGDRYCYGYNAAGALG
YCDSTFNSGCSCLPTSSALCQYDSDCSEGEHCSTNVLPSTYFCVSDTFLG
PVDDGLPKPGSQGLALGYCMYNSDCQSPLYCYMLDYEGYYESCDPSAGKE
CFCDYDFTAPVDNGECKSDSDCKTGEICPSYSFDYDWCVSTTAYQGFNFD
FCYSSSECREPRSCYMVLSDGSMFDCSPGDDSCVCMKDDTYDMLCSDLYD
CAFWAESCYYDETSGYSFCVSDAQLSLLRAKKFSKVIKANMHGHESPEVT
YEEVGSGLVPTSDDEMQMAPVISSPIPSTSPNASSDASPDTSPVAFPDGS
PVSSSKSSTLRYARAYC*

spliced messenger RNA

>Gcaud2255.t1 ID=Gcaud2255.t1|Name=Gcaud2255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_1006_length_15184_cov_4.802690:7049..8400+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCTCCGCCTTCATCGTTATTGTTTTCTCTTTCTATCTGTCACT
GTACATTTCAGTCTCCGAGGGCATCAATTTCAGATTAATCAGCAAATCCA
AAAAATGGCAGAAGAGGCCTTCCAAGAAAGGAATCACTCCGCTTAGCAGC
GAGGCCAAGGAAGCATATTCAAAGATTCAGCTCCCCAAAAATGTCACTTT
CTCACATCGCCAGGGTCTGAACTTTGATTATTGTGAAACGGACTTCGACT
GCCTGGGTGACAGATACTGTTACGGGTATAATGCCGCCGGTGCCCTGGGA
TACTGCGACTCCACTTTCAACAGTGGCTGCAGCTGCCTCCCCACGTCATC
TGCGTTGTGCCAATATGACAGCGATTGCAGTGAAGGGGAACATTGCAGCA
CGAATGTTTTACCCAGCACGTACTTCTGTGTGAGTGACACTTTTCTGGGT
CCAGTTGATGATGGCCTGCCGAAGCCCGGCTCTCAAGGATTAGCCCTGGG
CTACTGCATGTACAATTCAGATTGCCAGTCGCCACTTTATTGCTATATGC
TCGACTATGAGGGATACTACGAGAGTTGTGACCCTTCGGCAGGAAAGGAG
TGCTTCTGTGATTACGATTTCACCGCACCAGTCGACAACGGGGAATGCAA
ATCCGATTCTGATTGTAAAACTGGTGAAATATGCCCCAGTTACTCTTTCG
ACTATGACTGGTGCGTTTCGACTACAGCCTACCAAGGCTTCAACTTCGAT
TTCTGCTACTCATCTTCAGAATGCCGAGAACCTCGAAGTTGTTATATGGT
GCTTTCAGACGGAAGCATGTTCGACTGCTCTCCTGGCGACGATTCTTGTG
TCTGTATGAAAGACGATACCTATGATATGCTTTGCTCTGATCTCTACGAC
TGCGCGTTTTGGGCTGAGTCGTGCTATTATGATGAAACGTCTGGTTACAG
CTTTTGCGTGTCTGACGCGCAACTTTCACTGCTTAGAGCTAAGAAATTCT
CGAAGGTCATCAAAGCAAATATGCACGGTCATGAGTCGCCTGAAGTGACC
TATGAAGAGGTCGGTTCTGGACTTGTACCTACCAGTGATGATGAAATGCA
GATGGCACCAGTCATATCAAGCCCAATTCCTAGCACTTCTCCAAATGCTT
CTTCTGATGCTTCTCCAGATACCTCTCCAGTTGCCTTCCCGGATGGTTCT
CCTGTTTCTTCTTCGAAGTCTTCAACGctgcgctacgcccgggcatattg
ttaa

protein sequence of Gcaud2255.t1

>Gcaud2255.t1 ID=Gcaud2255.t1|Name=Gcaud2255.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=418bp
MHRSAFIVIVFSFYLSLYISVSEGINFRLISKSKKWQKRPSKKGITPLSS
EAKEAYSKIQLPKNVTFSHRQGLNFDYCETDFDCLGDRYCYGYNAAGALG
YCDSTFNSGCSCLPTSSALCQYDSDCSEGEHCSTNVLPSTYFCVSDTFLG
PVDDGLPKPGSQGLALGYCMYNSDCQSPLYCYMLDYEGYYESCDPSAGKE
CFCDYDFTAPVDNGECKSDSDCKTGEICPSYSFDYDWCVSTTAYQGFNFD
FCYSSSECREPRSCYMVLSDGSMFDCSPGDDSCVCMKDDTYDMLCSDLYD
CAFWAESCYYDETSGYSFCVSDAQLSLLRAKKFSKVIKANMHGHESPEVT
YEEVGSGLVPTSDDEMQMAPVISSPIPSTSPNASSDASPDTSPVAFPDGS
PVSSSKSSTLRYARAYC*

mRNA from alignment at NODE_1006_length_15184_cov_4.802690:7049..8400+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2255.t1 ID=Gcaud2255.t1|Name=Gcaud2255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1352bp|location=Sequence derived from alignment at NODE_1006_length_15184_cov_4.802690:7049..8400+ (Gracilaria caudata M_176_S67 male)
ATGCATCGCTCCGCCTTCATCGTTATTGTTTTCTCTTTCTATCTGTCACT
GTACATTTCAGTCTCCGAGGGCATCAATTTCAGATTAATCAGCAAATCCA
AAAAATGGCAGAAGAGGCCTTCCAAGAAAGGAATCACTCCGCTTAGCAGC
GAGGCCAAGGAAGCATATTCAAAGATTCAGCTCCCCAAAAATGTCACTTT
CTCACATCGCCAGGGTCTGAACTTTGATTATTGTGAAACGGACTTCGACT
GCCTGGGTGACAGATACTGTTACGGGTATAATGCCGCCGGTGCCCTGGGA
TACTGCGACTCCACTTTCAACAGTGGCTGCAGCTGCCTCCCCACGTCATC
TGCGTTGTGCCAATATGACAGCGATTGCAGTGAAGGGGAACATTGCAGCA
CGAATGTTTTACCCAGCACGTACTTCTGTGTGAGTGACACTTTTCTGGGT
CCAGTTGATGATGGCCTGCCGAAGCCCGGCTCTCAAGGATTAGCCCTGGG
CTACTGCATGTACAATTCAGATTGCCAGTCGCCACTTTATTGCTATATGC
TCGACTATGAGGGATACTACGAGAGTTGTGACCCTTCGGCAGGAAAGGAG
TGCTTCTGTGATTACGATTTCACCGCACCAGTCGACAACGGGGAATGCAA
ATCCGATTCTGATTGTAAAACTGGTGAAATATGCCCCAGTTACTCTTTCG
ACTATGACTGGTGCGTTTCGACTACAGCCTACCAAGGCTTCAACTTCGAT
TTCTGCTACTCATCTTCAGAATGCCGAGAACCTCGAAGTTGTTATATGGT
GCTTTCAGACGGAAGCATGTTCGACTGCTCTCCTGGCGACGATTCTTGTG
TCTGTATGAAAGACGATACCTATGATATGCTTTGCTCTGATCTCTACGAC
TGCGCGTTTTGGGCTGAGTCGTGCTATTATGATGAAACGTCTGGTTACAG
CTTTTGCGTGTCTGACGCGCAACTTTCACTGCTTAGAGCTAAGAAATTCT
CGAAGGTCATCAAAGCAAATATGCACGGTCATGAGTCGCCTGAAGTGACC
TATGAAGAGGTCGGTTCTGGACTTGTACCTACCAGTGATGATGAAATGCA
GATGGCACCAGTCATATCAAGCCCAATTCCTAGCACTTCTCCAAATGCTT
CTTCTGATGCTTCTCCAGATACCTCTCCAGTTGCCTTCCCGGATGGTTCT
CCTGTTTCTTCTTCGAAGTCTTCAACGGTATGTATTGCTGTGCACTCGCT
TGGTCATCTCCAGccacacgaactcatgtacgaaacgcaccaaattgctc
gtgttttgtgtgataataccaacagctgcgctacgcccgggcatattgtt
aa

Coding sequence (CDS) from alignment at NODE_1006_length_15184_cov_4.802690:7049..8400+

>Gcaud2255.t1 ID=Gcaud2255.t1|Name=Gcaud2255.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1254bp|location=Sequence derived from alignment at NODE_1006_length_15184_cov_4.802690:7049..8400+ (Gracilaria caudata M_176_S67 male)
ATGCATCGCTCCGCCTTCATCGTTATTGTTTTCTCTTTCTATCTGTCACT
GTACATTTCAGTCTCCGAGGGCATCAATTTCAGATTAATCAGCAAATCCA
AAAAATGGCAGAAGAGGCCTTCCAAGAAAGGAATCACTCCGCTTAGCAGC
GAGGCCAAGGAAGCATATTCAAAGATTCAGCTCCCCAAAAATGTCACTTT
CTCACATCGCCAGGGTCTGAACTTTGATTATTGTGAAACGGACTTCGACT
GCCTGGGTGACAGATACTGTTACGGGTATAATGCCGCCGGTGCCCTGGGA
TACTGCGACTCCACTTTCAACAGTGGCTGCAGCTGCCTCCCCACGTCATC
TGCGTTGTGCCAATATGACAGCGATTGCAGTGAAGGGGAACATTGCAGCA
CGAATGTTTTACCCAGCACGTACTTCTGTGTGAGTGACACTTTTCTGGGT
CCAGTTGATGATGGCCTGCCGAAGCCCGGCTCTCAAGGATTAGCCCTGGG
CTACTGCATGTACAATTCAGATTGCCAGTCGCCACTTTATTGCTATATGC
TCGACTATGAGGGATACTACGAGAGTTGTGACCCTTCGGCAGGAAAGGAG
TGCTTCTGTGATTACGATTTCACCGCACCAGTCGACAACGGGGAATGCAA
ATCCGATTCTGATTGTAAAACTGGTGAAATATGCCCCAGTTACTCTTTCG
ACTATGACTGGTGCGTTTCGACTACAGCCTACCAAGGCTTCAACTTCGAT
TTCTGCTACTCATCTTCAGAATGCCGAGAACCTCGAAGTTGTTATATGGT
GCTTTCAGACGGAAGCATGTTCGACTGCTCTCCTGGCGACGATTCTTGTG
TCTGTATGAAAGACGATACCTATGATATGCTTTGCTCTGATCTCTACGAC
TGCGCGTTTTGGGCTGAGTCGTGCTATTATGATGAAACGTCTGGTTACAG
CTTTTGCGTGTCTGACGCGCAACTTTCACTGCTTAGAGCTAAGAAATTCT
CGAAGGTCATCAAAGCAAATATGCACGGTCATGAGTCGCCTGAAGTGACC
TATGAAGAGGTCGGTTCTGGACTTGTACCTACCAGTGATGATGAAATGCA
GATGGCACCAGTCATATCAAGCCCAATTCCTAGCACTTCTCCAAATGCTT
CTTCTGATGCTTCTCCAGATACCTCTCCAGTTGCCTTCCCGGATGGTTCT
CCTGTTTCTTCTTCGAAGTCTTCAACGctgcgctacgcccgggcatattg
ttaa