Gcaud7979.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7979.t1
Unique NameGcaud7979.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length69
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1299_length_11632_cov_4.409930contigNODE_1299_length_11632_cov_4.409930:3646..4032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7979Gcaud7979Gracilaria caudata M_176_S67 malegeneNODE_1299_length_11632_cov_4.409930 3646..4032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7979.t1Gcaud7979.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1299_length_11632_cov_4.409930 3646..4032 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7979.t1.start1Gcaud7979.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1299_length_11632_cov_4.409930 3646..3648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7979.t1.CDS1Gcaud7979.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1299_length_11632_cov_4.409930 3646..3740 +
Gcaud7979.t1.CDS2Gcaud7979.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1299_length_11632_cov_4.409930 3921..4032 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7979.t1.exon1Gcaud7979.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1299_length_11632_cov_4.409930 3646..3740 +
Gcaud7979.t1.exon2Gcaud7979.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1299_length_11632_cov_4.409930 3921..4032 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7979.t1.intron1Gcaud7979.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1299_length_11632_cov_4.409930 3741..3920 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7979.t1.stop1Gcaud7979.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1299_length_11632_cov_4.409930 4030..4032 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7979.t1 ID=Gcaud7979.t1|Name=Gcaud7979.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=69bp
MSKSVGYSTITTGTKSSELCLHSMDIALHFKHVMYGDLVEASLYSLEEKS
KSTEDICREVCKAENEVS*
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spliced messenger RNA

>Gcaud7979.t1 ID=Gcaud7979.t1|Name=Gcaud7979.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=207bp|location=Sequence derived from alignment at NODE_1299_length_11632_cov_4.409930:3646..4032+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAATCAGTAGGGTATAGTACTATCACAACGGGAACCAAGTCGTC
TGAGCTATGCTTACATTCTATGGACATTGCTTTACATTTCAAGCATGTGA
TGTACGGCGACCTCGTCGAGGCTTCCCTTTACTCCTTGGAAGAGAAATCG
AAAAGCACAGAAGACATATGCCGAGAAGTATGCAAAGCAGAGAACGAGGT
CTCATGA
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protein sequence of Gcaud7979.t1

>Gcaud7979.t1 ID=Gcaud7979.t1|Name=Gcaud7979.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=69bp
MSKSVGYSTITTGTKSSELCLHSMDIALHFKHVMYGDLVEASLYSLEEKS
KSTEDICREVCKAENEVS*
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mRNA from alignment at NODE_1299_length_11632_cov_4.409930:3646..4032+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7979.t1 ID=Gcaud7979.t1|Name=Gcaud7979.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=387bp|location=Sequence derived from alignment at NODE_1299_length_11632_cov_4.409930:3646..4032+ (Gracilaria caudata M_176_S67 male)
ATGTCAAAATCAGTAGGGTATAGTACTATCACAACGGGAACCAAGTCGTC
TGAGCTATGCTTACATTCTATGGACATTGCTTTACATTTCAAGCAGTAAG
TGTGTTCATACTCCATTCATTTTTCAGTTATAACTAGTCAGTTATGGAAT
AATCGCTGCCCAGAAAACTTGTACCCGAAGAACGTAAGGATGAATATCCT
TCTCTACCGGAGATTGACAGAACAGACACACCAGAAGATATTGACTGTTT
TGATTTGCTTGAGAATCCTCCGTAGTGTGATGTACGGCGACCTCGTCGAG
GCTTCCCTTTACTCCTTGGAAGAGAAATCGAAAAGCACAGAAGACATATG
CCGAGAAGTATGCAAAGCAGAGAACGAGGTCTCATGA
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Coding sequence (CDS) from alignment at NODE_1299_length_11632_cov_4.409930:3646..4032+

>Gcaud7979.t1 ID=Gcaud7979.t1|Name=Gcaud7979.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=207bp|location=Sequence derived from alignment at NODE_1299_length_11632_cov_4.409930:3646..4032+ (Gracilaria caudata M_176_S67 male)
ATGTCAAAATCAGTAGGGTATAGTACTATCACAACGGGAACCAAGTCGTC
TGAGCTATGCTTACATTCTATGGACATTGCTTTACATTTCAAGCATGTGA
TGTACGGCGACCTCGTCGAGGCTTCCCTTTACTCCTTGGAAGAGAAATCG
AAAAGCACAGAAGACATATGCCGAGAAGTATGCAAAGCAGAGAACGAGGT
CTCATGA
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