Gcaud2803.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2803.t1
Unique Name	Gcaud2803.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	736

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_127_length_46135_cov_4.421901	contig	NODE_127_length_46135_cov_4.421901:35451..37658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708689.1
Preferred name	ISA1
PFAMs	Alpha-amylase,CBM_48
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01214
KEGG Reaction	R09995,R11261
KEGG Pathway	ko00500,ko01100,ko01110,map00500,map01100,map01110
KEGG Module	M00565
GOs	GO:0000272,GO:0003674,GO:0003824,GO:0004133,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005982,GO:0005983,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009507,GO:0009536,GO:0009987,GO:0010021,GO:0010368,GO:0015980,GO:0016052,GO:0016787,GO:0016798,GO:0019156,GO:0032991,GO:0043033,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901575,GO:1901576,GO:1902494,GO:2000896
Evalue	1.22e-144
EggNOG OGs	COG0296@1\|root,KOG0470@2759\|Eukaryota
EC	3.2.1.68
Description	1,4-alpha-glucan branching enzyme activity
COG category	G
CAZy	CBM48,GH13
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2803	Gcaud2803	Gracilaria caudata M_176_S67 male	gene	NODE_127_length_46135_cov_4.421901 35451..37658 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2803.t1.start1	Gcaud2803.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_127_length_46135_cov_4.421901 35451..35453 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2803.t1.CDS1	Gcaud2803.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_127_length_46135_cov_4.421901 35451..37658 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2803.t1.exon1	Gcaud2803.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_127_length_46135_cov_4.421901 35451..37658 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2803.t1.stop1	Gcaud2803.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_127_length_46135_cov_4.421901 37656..37658 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2803.t1	Gcaud2803.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_127_length_46135_cov_4.421901 35451..37658 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_127_length_46135_cov_4.421901:35451..37658+
coding sequence from alignment at NODE_127_length_46135_cov_4.421901:35451..37658+

mRNA sequence

>Gcaud2803.t1 ID=Gcaud2803.t1|Name=Gcaud2803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=736bp
MVQISVGRGKAFPLGPTVISSEPRSIHAHKPLLLTVNVAVYAKVHELKIC
LFPEIDGDQITRDFQQCIPFRHRTGDVWHVELQGIPYNCSYSIMVPSSHG
NSRLLSDPYGRWVESRGSLMWMRLEGENYSTKQKTVEDNVREFIRSFPSL
SSIGVQHPFRPTRFTAPTAAQQFDWGDEKYPRLSYADVVIYEAHIRGLTS
AGTFESAIQRIPYLKWLGVTALQLMPIFEFNELEVDAMTGEYALLSRKHA
DVDQRAGNFWGYSPFSWFSPMNRYSEQPVSGGPVGLKKLVRALHAAGMEC
YLDVVYNHTANSSCAFHFLRTQSSYYIGRSHHHGFEHSNLSGCGNTLATA
RPMMQELVMNSLRWWVTEYHIDGFRIDAAGILCRDENGKPISKPQIIENM
VNDPVLKETKFIVEGWDAGDQVGSPNFLLGSKHGFPQGDRFYEWNAKWRD
DTRRYIMGNRDANKSFREGMRGSPQFFSRRSGTGPAFHSVNFVSCHDGMC
MADVVSFSKRSNKDGYDEVSFNCGSEGHASDEKVLKMRARRLRNFMLALA
ISRGIPMILQGDEIGTTKDGFSNTWNDPKRFACRLPEFDVNHAKESNSEW
RSHESLAWFCRKVFGIRKRYEDFTKGDFMNQAKWLDMRGRERGGREERYV
GFVVKTKDLWDVNAAMEKWLFVGFYNGSNGTRVKLPDVGITEWSVILDTF
RWNPNTEDSHGEYRVGKDGVLEMGSHSAIVAVGNA*

spliced messenger RNA

>Gcaud2803.t1 ID=Gcaud2803.t1|Name=Gcaud2803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2208bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:35451..37658+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAGATTAGTGTTGGTCGCGGCAAGGCCTTTCCTCTAGGACCAAC
AGTCATTTCATCGGAACCACGCTCAATTCATGCCCACAAGCCTTTATTGC
TGACCGTAAACGTCGCTGTCTATGCCAAAGTACACGAGTTGAAGATCTGC
CTGTTTCCCGAAATCGATGGAGACCAAATCACGCGCGACTTTCAACAATG
TATCCCTTTTCGTCATAGGACGGGAGATGTCTGGCACGTTGAACTTCAGG
GAATTCCTTATAACTGCTCCTACTCTATCATGGTTCCTTCTTCTCATGGT
AATTCTCGTCTACTGAGCGACCCTTATGGTCGCTGGGTGGAGTCCCGAGG
TTCTCTGATGTGGATGAGACTGGAAGGAGAGAACTACTCAACGAAACAGA
AAACCGTAGAGGACAACGTGAGAGAGTTTATTCGTTCTTTCCCCTCACTT
AGTTCGATTGGTGTTCAACATCCGTTTCGACCAACACGTTTCACTGCTCC
AACGGCTGCACAACAGTTTGACTGGGGTGACGAAAAATATCCGAGGTTGA
GTTATGCAGACGTTGTTATTTACGAAGCACACATCCGAGGTCTCACTTCT
GCGGGGACTTTCGAAAGCGCTATACAAAGAATACCGTACCTAAAGTGGTT
GGGAGTGACAGCTTTGCAGCTCATGCCCATCTTTGAATTTAATGAACTTG
AAGTAGACGCCATGACTGGCGAATATGCCTTGTTGAGCAGAAAACATGCC
GATGTGGATCAACGGGCTGGTAATTTCTGGGGTTACAGTCCTTTTTCTTG
GTTCTCCCCTATGAATAGATACTCTGAACAACCCGTCAGTGGTGGCCCAG
TTGGGCTTAAAAAACTAGTCCGGGCATTGCACGCTGCGGGTATGGAATGT
TATCTTGACGTTGTTTATAACCACACTGCAAACTCTTCCTGTGCTTTTCA
TTTCCTAAGGACACAGTCTTCTTACTACATCGGTAGGTCACATCACCATG
GCTTTGAACACAGTAATCTCTCTGGGTGCGGAAACACGCTTGCCACAGCT
CGCCCAATGATGCAAGAGCTGGTGATGAACAGCCTTCGTTGGTGGGTTAC
AGAATACCACATTGACGGATTCCGCATCGATGCTGCTGGCATTCTGTGCC
GAGATGAAAACGGGAAGCCCATCAGCAAACCCCAGATCATTGAGAACATG
GTTAATGACCCGGTTTTGAAGGAGACGAAGTTTATCGTAGAGGGGTGGGA
TGCGGGAGATCAGGTGGGATCACCAAACTTCCTGTTGGGTTCGAAGCATG
GCTTTCCCCAAGGCGATCGATTTTATGAGTGGAATGCGAAATGGAGGGAT
GACACCCGGCGTTACATCATGGGTAATCGTGATGCAAACAAAAGCTTTCG
AGAAGGTATGCGAGGGTCACCACAGTTCTTCTCAAGGCGTAGCGGTACAG
GGCCAGCGTTTCATAGCGTAAATTTCGTCTCCTGTCACGACGGTATGTGC
ATGGCCGATGTGGTCAGCTTCAGTAAGAGATCAAACAAAGATGGGTATGA
TGAGGTTTCTTTCAATTGTGGAAGCGAAGGCCATGCTAGCGATGAAAAGG
TGCTGAAGATGCGAGCTCGGCGTCTACGAAATTTCATGCTTGCTCTAGCT
ATATCGAGAGGCATCCCGATGATTCTGCAAGGTGATGAAATTGGAACGAC
AAAGGATGGCTTTAGTAACACGTGGAATGATCCGAAAAGGTTTGCTTGTC
GTCTGCCAGAATTTGATGTAAATCACGCGAAGGAAAGCAATAGTGAGTGG
CGGTCTCATGAGAGTTTAGCTTGGTTCTGTAGGAAAGTCTTCGGTATTCG
AAAGCGCTATGAAGATTTTACAAAAGGAGACTTCATGAATCAAGCCAAAT
GGTTAGATATGAGGGGTAGAGAAAGAGGCGGTCGAGAAGAACGATATGTA
GGTTTTGTTGTAAAGACGAAGGATTTGTGGGATGTCAATGCGGCTATGGA
AAAATGGCTCTTCGTAGGCTTCTATAACGGTTCGAATGGGACCCGAGTGA
AGTTGCCCGACGTTGGGATCACTGAATGGAGCGTTATTTTGGACACCTTT
CGCTGGAACCCGAATACTGAAGACAGCCATGGCGAGTATAGGGTGGGCAA
GGACGGCGTCCTGGAAATGGGTTCTCATTCAGCAATTGTTGCAGTTGGTA
ATGCATAA

protein sequence of Gcaud2803.t1

>Gcaud2803.t1 ID=Gcaud2803.t1|Name=Gcaud2803.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=736bp
MVQISVGRGKAFPLGPTVISSEPRSIHAHKPLLLTVNVAVYAKVHELKIC
LFPEIDGDQITRDFQQCIPFRHRTGDVWHVELQGIPYNCSYSIMVPSSHG
NSRLLSDPYGRWVESRGSLMWMRLEGENYSTKQKTVEDNVREFIRSFPSL
SSIGVQHPFRPTRFTAPTAAQQFDWGDEKYPRLSYADVVIYEAHIRGLTS
AGTFESAIQRIPYLKWLGVTALQLMPIFEFNELEVDAMTGEYALLSRKHA
DVDQRAGNFWGYSPFSWFSPMNRYSEQPVSGGPVGLKKLVRALHAAGMEC
YLDVVYNHTANSSCAFHFLRTQSSYYIGRSHHHGFEHSNLSGCGNTLATA
RPMMQELVMNSLRWWVTEYHIDGFRIDAAGILCRDENGKPISKPQIIENM
VNDPVLKETKFIVEGWDAGDQVGSPNFLLGSKHGFPQGDRFYEWNAKWRD
DTRRYIMGNRDANKSFREGMRGSPQFFSRRSGTGPAFHSVNFVSCHDGMC
MADVVSFSKRSNKDGYDEVSFNCGSEGHASDEKVLKMRARRLRNFMLALA
ISRGIPMILQGDEIGTTKDGFSNTWNDPKRFACRLPEFDVNHAKESNSEW
RSHESLAWFCRKVFGIRKRYEDFTKGDFMNQAKWLDMRGRERGGREERYV
GFVVKTKDLWDVNAAMEKWLFVGFYNGSNGTRVKLPDVGITEWSVILDTF
RWNPNTEDSHGEYRVGKDGVLEMGSHSAIVAVGNA*

mRNA from alignment at NODE_127_length_46135_cov_4.421901:35451..37658+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2803.t1 ID=Gcaud2803.t1|Name=Gcaud2803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2208bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:35451..37658+ (Gracilaria caudata M_176_S67 male)
ATGGTGCAGATTAGTGTTGGTCGCGGCAAGGCCTTTCCTCTAGGACCAAC
AGTCATTTCATCGGAACCACGCTCAATTCATGCCCACAAGCCTTTATTGC
TGACCGTAAACGTCGCTGTCTATGCCAAAGTACACGAGTTGAAGATCTGC
CTGTTTCCCGAAATCGATGGAGACCAAATCACGCGCGACTTTCAACAATG
TATCCCTTTTCGTCATAGGACGGGAGATGTCTGGCACGTTGAACTTCAGG
GAATTCCTTATAACTGCTCCTACTCTATCATGGTTCCTTCTTCTCATGGT
AATTCTCGTCTACTGAGCGACCCTTATGGTCGCTGGGTGGAGTCCCGAGG
TTCTCTGATGTGGATGAGACTGGAAGGAGAGAACTACTCAACGAAACAGA
AAACCGTAGAGGACAACGTGAGAGAGTTTATTCGTTCTTTCCCCTCACTT
AGTTCGATTGGTGTTCAACATCCGTTTCGACCAACACGTTTCACTGCTCC
AACGGCTGCACAACAGTTTGACTGGGGTGACGAAAAATATCCGAGGTTGA
GTTATGCAGACGTTGTTATTTACGAAGCACACATCCGAGGTCTCACTTCT
GCGGGGACTTTCGAAAGCGCTATACAAAGAATACCGTACCTAAAGTGGTT
GGGAGTGACAGCTTTGCAGCTCATGCCCATCTTTGAATTTAATGAACTTG
AAGTAGACGCCATGACTGGCGAATATGCCTTGTTGAGCAGAAAACATGCC
GATGTGGATCAACGGGCTGGTAATTTCTGGGGTTACAGTCCTTTTTCTTG
GTTCTCCCCTATGAATAGATACTCTGAACAACCCGTCAGTGGTGGCCCAG
TTGGGCTTAAAAAACTAGTCCGGGCATTGCACGCTGCGGGTATGGAATGT
TATCTTGACGTTGTTTATAACCACACTGCAAACTCTTCCTGTGCTTTTCA
TTTCCTAAGGACACAGTCTTCTTACTACATCGGTAGGTCACATCACCATG
GCTTTGAACACAGTAATCTCTCTGGGTGCGGAAACACGCTTGCCACAGCT
CGCCCAATGATGCAAGAGCTGGTGATGAACAGCCTTCGTTGGTGGGTTAC
AGAATACCACATTGACGGATTCCGCATCGATGCTGCTGGCATTCTGTGCC
GAGATGAAAACGGGAAGCCCATCAGCAAACCCCAGATCATTGAGAACATG
GTTAATGACCCGGTTTTGAAGGAGACGAAGTTTATCGTAGAGGGGTGGGA
TGCGGGAGATCAGGTGGGATCACCAAACTTCCTGTTGGGTTCGAAGCATG
GCTTTCCCCAAGGCGATCGATTTTATGAGTGGAATGCGAAATGGAGGGAT
GACACCCGGCGTTACATCATGGGTAATCGTGATGCAAACAAAAGCTTTCG
AGAAGGTATGCGAGGGTCACCACAGTTCTTCTCAAGGCGTAGCGGTACAG
GGCCAGCGTTTCATAGCGTAAATTTCGTCTCCTGTCACGACGGTATGTGC
ATGGCCGATGTGGTCAGCTTCAGTAAGAGATCAAACAAAGATGGGTATGA
TGAGGTTTCTTTCAATTGTGGAAGCGAAGGCCATGCTAGCGATGAAAAGG
TGCTGAAGATGCGAGCTCGGCGTCTACGAAATTTCATGCTTGCTCTAGCT
ATATCGAGAGGCATCCCGATGATTCTGCAAGGTGATGAAATTGGAACGAC
AAAGGATGGCTTTAGTAACACGTGGAATGATCCGAAAAGGTTTGCTTGTC
GTCTGCCAGAATTTGATGTAAATCACGCGAAGGAAAGCAATAGTGAGTGG
CGGTCTCATGAGAGTTTAGCTTGGTTCTGTAGGAAAGTCTTCGGTATTCG
AAAGCGCTATGAAGATTTTACAAAAGGAGACTTCATGAATCAAGCCAAAT
GGTTAGATATGAGGGGTAGAGAAAGAGGCGGTCGAGAAGAACGATATGTA
GGTTTTGTTGTAAAGACGAAGGATTTGTGGGATGTCAATGCGGCTATGGA
AAAATGGCTCTTCGTAGGCTTCTATAACGGTTCGAATGGGACCCGAGTGA
AGTTGCCCGACGTTGGGATCACTGAATGGAGCGTTATTTTGGACACCTTT
CGCTGGAACCCGAATACTGAAGACAGCCATGGCGAGTATAGGGTGGGCAA
GGACGGCGTCCTGGAAATGGGTTCTCATTCAGCAATTGTTGCAGTTGGTA
ATGCATAA

Coding sequence (CDS) from alignment at NODE_127_length_46135_cov_4.421901:35451..37658+

>Gcaud2803.t1 ID=Gcaud2803.t1|Name=Gcaud2803.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2208bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:35451..37658+ (Gracilaria caudata M_176_S67 male)
ATGGTGCAGATTAGTGTTGGTCGCGGCAAGGCCTTTCCTCTAGGACCAAC
AGTCATTTCATCGGAACCACGCTCAATTCATGCCCACAAGCCTTTATTGC
TGACCGTAAACGTCGCTGTCTATGCCAAAGTACACGAGTTGAAGATCTGC
CTGTTTCCCGAAATCGATGGAGACCAAATCACGCGCGACTTTCAACAATG
TATCCCTTTTCGTCATAGGACGGGAGATGTCTGGCACGTTGAACTTCAGG
GAATTCCTTATAACTGCTCCTACTCTATCATGGTTCCTTCTTCTCATGGT
AATTCTCGTCTACTGAGCGACCCTTATGGTCGCTGGGTGGAGTCCCGAGG
TTCTCTGATGTGGATGAGACTGGAAGGAGAGAACTACTCAACGAAACAGA
AAACCGTAGAGGACAACGTGAGAGAGTTTATTCGTTCTTTCCCCTCACTT
AGTTCGATTGGTGTTCAACATCCGTTTCGACCAACACGTTTCACTGCTCC
AACGGCTGCACAACAGTTTGACTGGGGTGACGAAAAATATCCGAGGTTGA
GTTATGCAGACGTTGTTATTTACGAAGCACACATCCGAGGTCTCACTTCT
GCGGGGACTTTCGAAAGCGCTATACAAAGAATACCGTACCTAAAGTGGTT
GGGAGTGACAGCTTTGCAGCTCATGCCCATCTTTGAATTTAATGAACTTG
AAGTAGACGCCATGACTGGCGAATATGCCTTGTTGAGCAGAAAACATGCC
GATGTGGATCAACGGGCTGGTAATTTCTGGGGTTACAGTCCTTTTTCTTG
GTTCTCCCCTATGAATAGATACTCTGAACAACCCGTCAGTGGTGGCCCAG
TTGGGCTTAAAAAACTAGTCCGGGCATTGCACGCTGCGGGTATGGAATGT
TATCTTGACGTTGTTTATAACCACACTGCAAACTCTTCCTGTGCTTTTCA
TTTCCTAAGGACACAGTCTTCTTACTACATCGGTAGGTCACATCACCATG
GCTTTGAACACAGTAATCTCTCTGGGTGCGGAAACACGCTTGCCACAGCT
CGCCCAATGATGCAAGAGCTGGTGATGAACAGCCTTCGTTGGTGGGTTAC
AGAATACCACATTGACGGATTCCGCATCGATGCTGCTGGCATTCTGTGCC
GAGATGAAAACGGGAAGCCCATCAGCAAACCCCAGATCATTGAGAACATG
GTTAATGACCCGGTTTTGAAGGAGACGAAGTTTATCGTAGAGGGGTGGGA
TGCGGGAGATCAGGTGGGATCACCAAACTTCCTGTTGGGTTCGAAGCATG
GCTTTCCCCAAGGCGATCGATTTTATGAGTGGAATGCGAAATGGAGGGAT
GACACCCGGCGTTACATCATGGGTAATCGTGATGCAAACAAAAGCTTTCG
AGAAGGTATGCGAGGGTCACCACAGTTCTTCTCAAGGCGTAGCGGTACAG
GGCCAGCGTTTCATAGCGTAAATTTCGTCTCCTGTCACGACGGTATGTGC
ATGGCCGATGTGGTCAGCTTCAGTAAGAGATCAAACAAAGATGGGTATGA
TGAGGTTTCTTTCAATTGTGGAAGCGAAGGCCATGCTAGCGATGAAAAGG
TGCTGAAGATGCGAGCTCGGCGTCTACGAAATTTCATGCTTGCTCTAGCT
ATATCGAGAGGCATCCCGATGATTCTGCAAGGTGATGAAATTGGAACGAC
AAAGGATGGCTTTAGTAACACGTGGAATGATCCGAAAAGGTTTGCTTGTC
GTCTGCCAGAATTTGATGTAAATCACGCGAAGGAAAGCAATAGTGAGTGG
CGGTCTCATGAGAGTTTAGCTTGGTTCTGTAGGAAAGTCTTCGGTATTCG
AAAGCGCTATGAAGATTTTACAAAAGGAGACTTCATGAATCAAGCCAAAT
GGTTAGATATGAGGGGTAGAGAAAGAGGCGGTCGAGAAGAACGATATGTA
GGTTTTGTTGTAAAGACGAAGGATTTGTGGGATGTCAATGCGGCTATGGA
AAAATGGCTCTTCGTAGGCTTCTATAACGGTTCGAATGGGACCCGAGTGA
AGTTGCCCGACGTTGGGATCACTGAATGGAGCGTTATTTTGGACACCTTT
CGCTGGAACCCGAATACTGAAGACAGCCATGGCGAGTATAGGGTGGGCAA
GGACGGCGTCCTGGAAATGGGTTCTCATTCAGCAATTGTTGCAGTTGGTA
ATGCATAA