Gcaud9347.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9347.t1
Unique NameGcaud9347.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1027_length_14887_cov_3.970330contigNODE_1027_length_14887_cov_3.970330:2623..3063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN240CT
Preferred nameOCA1
PFAMsY_phosphatase2
Max annot lvl2759|Eukaryota
KEGG koko:K18043
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033554,GO:0034599,GO:0035335,GO:0036211,GO:0042221,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0140096,GO:1901564
Evalue1.83e-53
EggNOG OGsCOG2365@1|root,KOG1572@2759|Eukaryota
EC3.1.3.48
Descriptionprotein tyrosine phosphatase activity
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9347Gcaud9347Gracilaria caudata M_176_S67 malegeneNODE_1027_length_14887_cov_3.970330 2623..3063 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9347.t1.stop1Gcaud9347.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1027_length_14887_cov_3.970330 2623..2625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9347.t1.CDS1Gcaud9347.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1027_length_14887_cov_3.970330 2623..3063 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9347.t1.exon1Gcaud9347.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1027_length_14887_cov_3.970330 2623..3063 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9347.t1.start1Gcaud9347.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1027_length_14887_cov_3.970330 3061..3063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9347.t1Gcaud9347.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1027_length_14887_cov_3.970330 2623..3063 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9347.t1 ID=Gcaud9347.t1|Name=Gcaud9347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=147bp
MPNELNFPFLERLQLRSIIYLASDEVSDKMLDFIDEQRIRLLQLFHDEDV
PTPWKPISEDTVLMAMELLLCTDCYPVCIVCSQGRHRTGTVVGCLRKLQR
WSLSSIFDEYHRHADGKGRLVNEQFIELFDTDLINVPSVKRPKWLR*
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spliced messenger RNA

>Gcaud9347.t1 ID=Gcaud9347.t1|Name=Gcaud9347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:2623..3063- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAACGAGCTCAACTTCCCGTTCTTGGAGCGCCTGCAACTGCGCAG
CATCATCTATCTGGCGTCCGACGAAGTGTCCGACAAGATGCTCGACTTCA
TCGATGAGCAACGTATCCGATTGCTGCAGCTGTTCCACGATGAGGACGTG
CCCACGCCGTGGAAACCGATCAGCGAGGACACGGTGTTGATGGCGATGGA
GCTTTTGTTGTGCACCGACTGTTACCCCGTGTGCATTGTGTGCTCGCAGG
GCCGACATCGCACGGGCACGGTTGTGGGCTGTTTGAGAAAGCTGCAGCGC
TGGAGTTTGTCGAGCATTTTTGATGAGTATCATCGCCATGCGGATGGGAA
GGGACGATTGGTGAATGAGCAGTTCATCGAACTGTTCGACACCGATCTCA
TCAACGTGCCGTCCGTGAAGCGCCCAAAGTGGCTACGATAA
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protein sequence of Gcaud9347.t1

>Gcaud9347.t1 ID=Gcaud9347.t1|Name=Gcaud9347.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=147bp
MPNELNFPFLERLQLRSIIYLASDEVSDKMLDFIDEQRIRLLQLFHDEDV
PTPWKPISEDTVLMAMELLLCTDCYPVCIVCSQGRHRTGTVVGCLRKLQR
WSLSSIFDEYHRHADGKGRLVNEQFIELFDTDLINVPSVKRPKWLR*
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mRNA from alignment at NODE_1027_length_14887_cov_3.970330:2623..3063-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9347.t1 ID=Gcaud9347.t1|Name=Gcaud9347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:2623..3063- (Gracilaria caudata M_176_S67 male)
ATGCCCAACGAGCTCAACTTCCCGTTCTTGGAGCGCCTGCAACTGCGCAG
CATCATCTATCTGGCGTCCGACGAAGTGTCCGACAAGATGCTCGACTTCA
TCGATGAGCAACGTATCCGATTGCTGCAGCTGTTCCACGATGAGGACGTG
CCCACGCCGTGGAAACCGATCAGCGAGGACACGGTGTTGATGGCGATGGA
GCTTTTGTTGTGCACCGACTGTTACCCCGTGTGCATTGTGTGCTCGCAGG
GCCGACATCGCACGGGCACGGTTGTGGGCTGTTTGAGAAAGCTGCAGCGC
TGGAGTTTGTCGAGCATTTTTGATGAGTATCATCGCCATGCGGATGGGAA
GGGACGATTGGTGAATGAGCAGTTCATCGAACTGTTCGACACCGATCTCA
TCAACGTGCCGTCCGTGAAGCGCCCAAAGTGGCTACGATAA
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Coding sequence (CDS) from alignment at NODE_1027_length_14887_cov_3.970330:2623..3063-

>Gcaud9347.t1 ID=Gcaud9347.t1|Name=Gcaud9347.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=441bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:2623..3063- (Gracilaria caudata M_176_S67 male)
ATGCCCAACGAGCTCAACTTCCCGTTCTTGGAGCGCCTGCAACTGCGCAG
CATCATCTATCTGGCGTCCGACGAAGTGTCCGACAAGATGCTCGACTTCA
TCGATGAGCAACGTATCCGATTGCTGCAGCTGTTCCACGATGAGGACGTG
CCCACGCCGTGGAAACCGATCAGCGAGGACACGGTGTTGATGGCGATGGA
GCTTTTGTTGTGCACCGACTGTTACCCCGTGTGCATTGTGTGCTCGCAGG
GCCGACATCGCACGGGCACGGTTGTGGGCTGTTTGAGAAAGCTGCAGCGC
TGGAGTTTGTCGAGCATTTTTGATGAGTATCATCGCCATGCGGATGGGAA
GGGACGATTGGTGAATGAGCAGTTCATCGAACTGTTCGACACCGATCTCA
TCAACGTGCCGTCCGTGAAGCGCCCAAAGTGGCTACGATAA
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