Gcaud7488.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7488.t1
Unique Name	Gcaud7488.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1257_length_12097_cov_4.624105	contig	NODE_1257_length_12097_cov_4.624105:8178..9495 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7488	Gcaud7488	Gracilaria caudata M_176_S67 male	gene	NODE_1257_length_12097_cov_4.624105 8178..9495 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7488.t1	Gcaud7488.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1257_length_12097_cov_4.624105 8178..9495 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7488.t1.start1	Gcaud7488.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1257_length_12097_cov_4.624105 8178..8180 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7488.t1.CDS1	Gcaud7488.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1257_length_12097_cov_4.624105 8178..8710 +
Gcaud7488.t1.CDS2	Gcaud7488.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1257_length_12097_cov_4.624105 9012..9495 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7488.t1.exon1	Gcaud7488.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1257_length_12097_cov_4.624105 8178..8710 +
Gcaud7488.t1.exon2	Gcaud7488.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1257_length_12097_cov_4.624105 9012..9495 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7488.t1.intron1	Gcaud7488.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1257_length_12097_cov_4.624105 8711..9011 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7488.t1.stop1	Gcaud7488.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1257_length_12097_cov_4.624105 9493..9495 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1257_length_12097_cov_4.624105:8178..9495+
coding sequence from alignment at NODE_1257_length_12097_cov_4.624105:8178..9495+

mRNA sequence

>Gcaud7488.t1 ID=Gcaud7488.t1|Name=Gcaud7488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp
MAKFPPAPPYHVDLQSDRIFSPITSSAEESQAQETLVKGSLHQLPRKMPK
KEPPIDSPRGRVGETLRNPLSIVFGGIQRDPPLFVRRKSARKAEDDDKDK
EAAVTALELSIMGSALVLTLGLQVQEVVGSRGGFGNSTQNAEVRFLFVGA
SALSFALGFYSIVTAAVMLLSIVSTPNMNTKAMLKRMSGWLLAPRMCTLA
AAGCLAIKTLIAHFLGLEKSASILGAVVIGIGLLFTSIATAMIYKCLAQF
SEGDTHCERDVHKDDGMDMCHDDLGEEDCEASLGETSQLQQNIMSEERVF
GNVDRSPTSMTLQASMPNQMDHTASIPVATSCLQMRQR*

spliced messenger RNA

>Gcaud7488.t1 ID=Gcaud7488.t1|Name=Gcaud7488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_1257_length_12097_cov_4.624105:8178..9495+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAAATTTCCGCCAGCACCGCCATATCACGTTGACCTCCAAAGTGA
CAGGATTTTCTCCCCAATAACATCATCTGCTGAGGAAAGCCAGGCGCAGG
AAACCCTTGTCAAGGGGAGTCTGCATCAGTTACCTCGCAAAATGCCTAAG
AAAGAACCTCCAATCGATAGCCCCAGAGGACGAGTTGGTGAAACATTACG
AAACCCACTTTCAATAGTATTCGGTGGGATTCAAAGAGACCCGCCTCTGT
TTGTCAGAAGAAAATCGGCACGGAAGGCTGAGGACGATGACAAGGACAAG
GAGGCGGCGGTGACTGCCTTGGAGCTGTCAATAATGGGGAGCGCTCTTGT
GCTAACTTTAGGTTTACAGGTTCAGGAAGTGGTTGGGAGCAGGGGTGGTT
TCGGGAATTCCACCCAGAATGCAGAAGTCCGATTCTTGTTCGTCGGTGCT
TCCGCACTGTCATTTGCTCTGGGGTTTTACTCCATTGTTACAGCGGCGGT
CATGCTTCTTTCCATTGTTTCAACTCCAAATATGAATACGAAGGCTATGC
TGAAGAGAATGTCAGGATGGCTTCTTGCACCTCGCATGTGTACACTCGCA
GCCGCAGGTTGTCTGGCAATCAAGACATTGATAGCCCACTTTCTCGGCCT
TGAGAAGAGCGCATCAATTCTAGGCGCAGTTGTGATCGGCATCGGTCTTC
TATTCACAAGCATTGCGACAGCCATGATCTACAAGTGCCTAGCTCAATTT
AGCGAGGGCGACACCCATTGCGAGCGTGATGTGCACAAAGATGACGGTAT
GGACATGTGCCACGACGATCTTGGCGAGGAGGATTGTGAAGCAAGCCTTG
GTGAGACGAGTCAACTTCAGCAGAATATCATGAGCGAAGAACGAGTGTTC
GGGAACGTGGATCGCTCACCGACTAGCATGACATTGCAAGCATCGATGCC
AAACCAAATGGATCACACAGCTTCCATACCCGTCGCAACTTCCTGTTTAC
AAATGCGACAGCGATGA

protein sequence of Gcaud7488.t1

>Gcaud7488.t1 ID=Gcaud7488.t1|Name=Gcaud7488.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=339bp
MAKFPPAPPYHVDLQSDRIFSPITSSAEESQAQETLVKGSLHQLPRKMPK
KEPPIDSPRGRVGETLRNPLSIVFGGIQRDPPLFVRRKSARKAEDDDKDK
EAAVTALELSIMGSALVLTLGLQVQEVVGSRGGFGNSTQNAEVRFLFVGA
SALSFALGFYSIVTAAVMLLSIVSTPNMNTKAMLKRMSGWLLAPRMCTLA
AAGCLAIKTLIAHFLGLEKSASILGAVVIGIGLLFTSIATAMIYKCLAQF
SEGDTHCERDVHKDDGMDMCHDDLGEEDCEASLGETSQLQQNIMSEERVF
GNVDRSPTSMTLQASMPNQMDHTASIPVATSCLQMRQR*

mRNA from alignment at NODE_1257_length_12097_cov_4.624105:8178..9495+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7488.t1 ID=Gcaud7488.t1|Name=Gcaud7488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1318bp|location=Sequence derived from alignment at NODE_1257_length_12097_cov_4.624105:8178..9495+ (Gracilaria caudata M_176_S67 male)
ATGGCTAAATTTCCGCCAGCACCGCCATATCACGTTGACCTCCAAAGTGA
CAGGATTTTCTCCCCAATAACATCATCTGCTGAGGAAAGCCAGGCGCAGG
AAACCCTTGTCAAGGGGAGTCTGCATCAGTTACCTCGCAAAATGCCTAAG
AAAGAACCTCCAATCGATAGCCCCAGAGGACGAGTTGGTGAAACATTACG
AAACCCACTTTCAATAGTATTCGGTGGGATTCAAAGAGACCCGCCTCTGT
TTGTCAGAAGAAAATCGGCACGGAAGGCTGAGGACGATGACAAGGACAAG
GAGGCGGCGGTGACTGCCTTGGAGCTGTCAATAATGGGGAGCGCTCTTGT
GCTAACTTTAGGTTTACAGGTTCAGGAAGTGGTTGGGAGCAGGGGTGGTT
TCGGGAATTCCACCCAGAATGCAGAAGTCCGATTCTTGTTCGTCGGTGCT
TCCGCACTGTCATTTGCTCTGGGGTTTTACTCCATTGTTACAGCGGCGGT
CATGCTTCTTTCCATTGTTTCAACTCCAAATATGTAAGTTGGAACGAGTC
ATTCCATTTCCATCACCAGGAAAAAAGAGGCATGAGACGAGTCGAAATCT
CGTGACGTGATCATGAAATGAGGTAGTTGCGGTCATATCGGGACAACCCC
TGTTAATGTTAGTCAGATGGTACAGAGGAATTGCCTTGATCCTTTTCCCA
CAGTTTCACACGTAGCGCGCGACTGACACTTGAGAGCTGAGAACTAACCA
CGTTTGTGTGTACGACTTGTTGTCTGACTTGCGCTTTTTGCATATCGCTA
CTTGTCCCGTTTCACAATGTTGCACAAACGTCAGGAATACGAAGGCTATG
CTGAAGAGAATGTCAGGATGGCTTCTTGCACCTCGCATGTGTACACTCGC
AGCCGCAGGTTGTCTGGCAATCAAGACATTGATAGCCCACTTTCTCGGCC
TTGAGAAGAGCGCATCAATTCTAGGCGCAGTTGTGATCGGCATCGGTCTT
CTATTCACAAGCATTGCGACAGCCATGATCTACAAGTGCCTAGCTCAATT
TAGCGAGGGCGACACCCATTGCGAGCGTGATGTGCACAAAGATGACGGTA
TGGACATGTGCCACGACGATCTTGGCGAGGAGGATTGTGAAGCAAGCCTT
GGTGAGACGAGTCAACTTCAGCAGAATATCATGAGCGAAGAACGAGTGTT
CGGGAACGTGGATCGCTCACCGACTAGCATGACATTGCAAGCATCGATGC
CAAACCAAATGGATCACACAGCTTCCATACCCGTCGCAACTTCCTGTTTA
CAAATGCGACAGCGATGA

Coding sequence (CDS) from alignment at NODE_1257_length_12097_cov_4.624105:8178..9495+

>Gcaud7488.t1 ID=Gcaud7488.t1|Name=Gcaud7488.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1017bp|location=Sequence derived from alignment at NODE_1257_length_12097_cov_4.624105:8178..9495+ (Gracilaria caudata M_176_S67 male)
ATGGCTAAATTTCCGCCAGCACCGCCATATCACGTTGACCTCCAAAGTGA
CAGGATTTTCTCCCCAATAACATCATCTGCTGAGGAAAGCCAGGCGCAGG
AAACCCTTGTCAAGGGGAGTCTGCATCAGTTACCTCGCAAAATGCCTAAG
AAAGAACCTCCAATCGATAGCCCCAGAGGACGAGTTGGTGAAACATTACG
AAACCCACTTTCAATAGTATTCGGTGGGATTCAAAGAGACCCGCCTCTGT
TTGTCAGAAGAAAATCGGCACGGAAGGCTGAGGACGATGACAAGGACAAG
GAGGCGGCGGTGACTGCCTTGGAGCTGTCAATAATGGGGAGCGCTCTTGT
GCTAACTTTAGGTTTACAGGTTCAGGAAGTGGTTGGGAGCAGGGGTGGTT
TCGGGAATTCCACCCAGAATGCAGAAGTCCGATTCTTGTTCGTCGGTGCT
TCCGCACTGTCATTTGCTCTGGGGTTTTACTCCATTGTTACAGCGGCGGT
CATGCTTCTTTCCATTGTTTCAACTCCAAATATGAATACGAAGGCTATGC
TGAAGAGAATGTCAGGATGGCTTCTTGCACCTCGCATGTGTACACTCGCA
GCCGCAGGTTGTCTGGCAATCAAGACATTGATAGCCCACTTTCTCGGCCT
TGAGAAGAGCGCATCAATTCTAGGCGCAGTTGTGATCGGCATCGGTCTTC
TATTCACAAGCATTGCGACAGCCATGATCTACAAGTGCCTAGCTCAATTT
AGCGAGGGCGACACCCATTGCGAGCGTGATGTGCACAAAGATGACGGTAT
GGACATGTGCCACGACGATCTTGGCGAGGAGGATTGTGAAGCAAGCCTTG
GTGAGACGAGTCAACTTCAGCAGAATATCATGAGCGAAGAACGAGTGTTC
GGGAACGTGGATCGCTCACCGACTAGCATGACATTGCAAGCATCGATGCC
AAACCAAATGGATCACACAGCTTCCATACCCGTCGCAACTTCCTGTTTAC
AAATGCGACAGCGATGA