Gcaud3752.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3752.t1
Unique Name	Gcaud3752.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1025_length_14911_cov_4.737989	contig	NODE_1025_length_14911_cov_4.737989:2226..3653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LM92
PFAMs	CBM_1,LPMO_10
Max annot lvl	2759\|Eukaryota
Evalue	3.14e-23
EggNOG OGs	2CZUJ@1\|root,2SBQR@2759\|Eukaryota
Description	Fungal-type cellulose-binding domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3752	Gcaud3752	Gracilaria caudata M_176_S67 male	gene	NODE_1025_length_14911_cov_4.737989 2226..3653 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3752.t1.start1	Gcaud3752.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1025_length_14911_cov_4.737989 2226..2228 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3752.t1.CDS1	Gcaud3752.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1025_length_14911_cov_4.737989 2226..3653 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3752.t1.exon1	Gcaud3752.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1025_length_14911_cov_4.737989 2226..3653 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3752.t1.stop1	Gcaud3752.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1025_length_14911_cov_4.737989 3651..3653 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3752.t1	Gcaud3752.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1025_length_14911_cov_4.737989 2226..3653 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1025_length_14911_cov_4.737989:2226..3653+
coding sequence from alignment at NODE_1025_length_14911_cov_4.737989:2226..3653+

mRNA sequence

>Gcaud3752.t1 ID=Gcaud3752.t1|Name=Gcaud3752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=476bp
MEVRTCLALLGLLYLLPYVRAHGMMCTPRQRGAYHAMDKCGSNLSQPRNP
TTDYCPHCLNGGTVATVKKNLPSGGWKEYDPIKDASTLKRAGLCGDPRAS
NDHMIGGKFMKYDKIPIVDEWKSGSVVDFQIEVDTNHNGYFEFFLCNLEA
CGVSDISEKCFRKHCYRLKRVKVRKCESPTKATHTQCGPIDGKYPSRFYV
PCRKTGHVGVHLLGGDGTMLYRLPDGVSCAHCVLQWYWATGNSCAPRGFL
NYFERNDNPFGTTCDSDGGGRGAHRKGMTSCGGQNVPEEFWSCADVRITA
RGKQKPQKARDTALSKEDEAPMKKPKKAPNSPVLEEPKRPKPQSGDTSKP
LSQATNTSRPEKGRDSSKKKKPRKGSPKRRPTRKRCIAEHVVCNGKVPCC
GSEHVCVYKSNPGAFVCEIWWKLWSEVKVGTERAVVIDEEENFNARTDVF
DVEEVHGRREEDEELGDYIVYDKEL*

spliced messenger RNA

>Gcaud3752.t1 ID=Gcaud3752.t1|Name=Gcaud3752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_1025_length_14911_cov_4.737989:2226..3653+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTCCGCACCTGTCTCGCCCTACTCGGGTTATTATATCTGCTTCC
TTACGTCAGAGCACATGGAATGATGTGTACTCCTCGACAGAGAGGGGCGT
ACCATGCAATGGACAAGTGCGGGTCAAACCTGTCTCAGCCTCGGAATCCC
ACCACAGACTACTGCCCACACTGCTTAAACGGCGGCACTGTGGCCACCGT
GAAAAAGAACCTGCCTTCTGGTGGTTGGAAGGAATACGATCCTATAAAAG
ATGCCTCTACTCTGAAAAGAGCAGGGCTTTGTGGCGACCCCAGAGCAAGT
AATGATCATATGATCGGCGGCAAATTCATGAAGTACGACAAGATTCCAAT
CGTCGATGAATGGAAGAGTGGTAGTGTCGTTGACTTTCAAATAGAAGTCG
ATACAAACCACAACGGATACTTCGAGTTCTTTCTTTGTAACTTGGAAGCT
TGTGGTGTTTCTGATATTTCTGAAAAGTGTTTTAGAAAGCACTGTTATCG
TCTTAAGAGAGTTAAGGTTCGTAAGTGTGAGTCGCCCACAAAGGCAACTC
ATACTCAGTGTGGCCCGATTGATGGAAAGTATCCTTCACGTTTTTATGTC
CCCTGTCGAAAAACCGGGCACGTTGGGGTACACCTCCTAGGTGGAGATGG
GACAATGCTCTACAGACTACCGGACGGAGTGTCTTGTGCACATTGTGTTC
TTCAGTGGTACTGGGCAACAGGAAATTCATGCGCACCACGAGGTTTTTTG
AATTACTTTGAAAGAAATGATAACCCCTTCGGAACAACATGTGACAGCGA
TGGAGGCGGAAGGGGAGCACATCGAAAAGGAATGACTAGTTGTGGAGGCC
AAAATGTTCCTGAAGAGTTTTGGTCATGCGCAGATGTTCGTATCACTGCG
AGAGGAAAGCAAAAACCACAGAAAGCGAGGGACACTGCGCTCTCAAAAGA
AGATGAGGCACCTATGAAGAAGCCTAAAAAGGCCCCAAATTCCCCAGTAC
TGGAAGAACCGAAGCGTCCAAAGCCCCAATCGGGGGATACGAGCAAGCCG
CTATCACAGGCAACGAATACTAGCAGACCAGAAAAGGGAAGGGATTCATC
GAAGAAAAAGAAACCGAGAAAAGGCAGTCCAAAGAGACGTCCAACGCGGA
AAAGATGTATTGCTGAGCATGTTGTTTGCAATGGAAAGGTTCCGTGCTGC
GGTTCAGAGCACGTTTGCGTATACAAGAGCAATCCTGGTGCTTTCGTATG
TGAAATATGGTGGAAGTTATGGAGTGAAGTCAAGGTTGGAACAGAACGTG
CTGTCGTCATAGACGAAGAAGAGAATTTTAACGCTAGAACTGATGTTTTT
GATGTTGAAGAAGTGCATGGACGGCGCGAAGAAGATGAGGAACTTGGTGA
TTATATTGTATACGACAAGGAGTTATAA

protein sequence of Gcaud3752.t1

>Gcaud3752.t1 ID=Gcaud3752.t1|Name=Gcaud3752.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=476bp
MEVRTCLALLGLLYLLPYVRAHGMMCTPRQRGAYHAMDKCGSNLSQPRNP
TTDYCPHCLNGGTVATVKKNLPSGGWKEYDPIKDASTLKRAGLCGDPRAS
NDHMIGGKFMKYDKIPIVDEWKSGSVVDFQIEVDTNHNGYFEFFLCNLEA
CGVSDISEKCFRKHCYRLKRVKVRKCESPTKATHTQCGPIDGKYPSRFYV
PCRKTGHVGVHLLGGDGTMLYRLPDGVSCAHCVLQWYWATGNSCAPRGFL
NYFERNDNPFGTTCDSDGGGRGAHRKGMTSCGGQNVPEEFWSCADVRITA
RGKQKPQKARDTALSKEDEAPMKKPKKAPNSPVLEEPKRPKPQSGDTSKP
LSQATNTSRPEKGRDSSKKKKPRKGSPKRRPTRKRCIAEHVVCNGKVPCC
GSEHVCVYKSNPGAFVCEIWWKLWSEVKVGTERAVVIDEEENFNARTDVF
DVEEVHGRREEDEELGDYIVYDKEL*

mRNA from alignment at NODE_1025_length_14911_cov_4.737989:2226..3653+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3752.t1 ID=Gcaud3752.t1|Name=Gcaud3752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_1025_length_14911_cov_4.737989:2226..3653+ (Gracilaria caudata M_176_S67 male)
ATGGAGGTCCGCACCTGTCTCGCCCTACTCGGGTTATTATATCTGCTTCC
TTACGTCAGAGCACATGGAATGATGTGTACTCCTCGACAGAGAGGGGCGT
ACCATGCAATGGACAAGTGCGGGTCAAACCTGTCTCAGCCTCGGAATCCC
ACCACAGACTACTGCCCACACTGCTTAAACGGCGGCACTGTGGCCACCGT
GAAAAAGAACCTGCCTTCTGGTGGTTGGAAGGAATACGATCCTATAAAAG
ATGCCTCTACTCTGAAAAGAGCAGGGCTTTGTGGCGACCCCAGAGCAAGT
AATGATCATATGATCGGCGGCAAATTCATGAAGTACGACAAGATTCCAAT
CGTCGATGAATGGAAGAGTGGTAGTGTCGTTGACTTTCAAATAGAAGTCG
ATACAAACCACAACGGATACTTCGAGTTCTTTCTTTGTAACTTGGAAGCT
TGTGGTGTTTCTGATATTTCTGAAAAGTGTTTTAGAAAGCACTGTTATCG
TCTTAAGAGAGTTAAGGTTCGTAAGTGTGAGTCGCCCACAAAGGCAACTC
ATACTCAGTGTGGCCCGATTGATGGAAAGTATCCTTCACGTTTTTATGTC
CCCTGTCGAAAAACCGGGCACGTTGGGGTACACCTCCTAGGTGGAGATGG
GACAATGCTCTACAGACTACCGGACGGAGTGTCTTGTGCACATTGTGTTC
TTCAGTGGTACTGGGCAACAGGAAATTCATGCGCACCACGAGGTTTTTTG
AATTACTTTGAAAGAAATGATAACCCCTTCGGAACAACATGTGACAGCGA
TGGAGGCGGAAGGGGAGCACATCGAAAAGGAATGACTAGTTGTGGAGGCC
AAAATGTTCCTGAAGAGTTTTGGTCATGCGCAGATGTTCGTATCACTGCG
AGAGGAAAGCAAAAACCACAGAAAGCGAGGGACACTGCGCTCTCAAAAGA
AGATGAGGCACCTATGAAGAAGCCTAAAAAGGCCCCAAATTCCCCAGTAC
TGGAAGAACCGAAGCGTCCAAAGCCCCAATCGGGGGATACGAGCAAGCCG
CTATCACAGGCAACGAATACTAGCAGACCAGAAAAGGGAAGGGATTCATC
GAAGAAAAAGAAACCGAGAAAAGGCAGTCCAAAGAGACGTCCAACGCGGA
AAAGATGTATTGCTGAGCATGTTGTTTGCAATGGAAAGGTTCCGTGCTGC
GGTTCAGAGCACGTTTGCGTATACAAGAGCAATCCTGGTGCTTTCGTATG
TGAAATATGGTGGAAGTTATGGAGTGAAGTCAAGGTTGGAACAGAACGTG
CTGTCGTCATAGACGAAGAAGAGAATTTTAACGCTAGAACTGATGTTTTT
GATGTTGAAGAAGTGCATGGACGGCGCGAAGAAGATGAGGAACTTGGTGA
TTATATTGTATACGACAAGGAGTTATAA

Coding sequence (CDS) from alignment at NODE_1025_length_14911_cov_4.737989:2226..3653+

>Gcaud3752.t1 ID=Gcaud3752.t1|Name=Gcaud3752.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1428bp|location=Sequence derived from alignment at NODE_1025_length_14911_cov_4.737989:2226..3653+ (Gracilaria caudata M_176_S67 male)
ATGGAGGTCCGCACCTGTCTCGCCCTACTCGGGTTATTATATCTGCTTCC
TTACGTCAGAGCACATGGAATGATGTGTACTCCTCGACAGAGAGGGGCGT
ACCATGCAATGGACAAGTGCGGGTCAAACCTGTCTCAGCCTCGGAATCCC
ACCACAGACTACTGCCCACACTGCTTAAACGGCGGCACTGTGGCCACCGT
GAAAAAGAACCTGCCTTCTGGTGGTTGGAAGGAATACGATCCTATAAAAG
ATGCCTCTACTCTGAAAAGAGCAGGGCTTTGTGGCGACCCCAGAGCAAGT
AATGATCATATGATCGGCGGCAAATTCATGAAGTACGACAAGATTCCAAT
CGTCGATGAATGGAAGAGTGGTAGTGTCGTTGACTTTCAAATAGAAGTCG
ATACAAACCACAACGGATACTTCGAGTTCTTTCTTTGTAACTTGGAAGCT
TGTGGTGTTTCTGATATTTCTGAAAAGTGTTTTAGAAAGCACTGTTATCG
TCTTAAGAGAGTTAAGGTTCGTAAGTGTGAGTCGCCCACAAAGGCAACTC
ATACTCAGTGTGGCCCGATTGATGGAAAGTATCCTTCACGTTTTTATGTC
CCCTGTCGAAAAACCGGGCACGTTGGGGTACACCTCCTAGGTGGAGATGG
GACAATGCTCTACAGACTACCGGACGGAGTGTCTTGTGCACATTGTGTTC
TTCAGTGGTACTGGGCAACAGGAAATTCATGCGCACCACGAGGTTTTTTG
AATTACTTTGAAAGAAATGATAACCCCTTCGGAACAACATGTGACAGCGA
TGGAGGCGGAAGGGGAGCACATCGAAAAGGAATGACTAGTTGTGGAGGCC
AAAATGTTCCTGAAGAGTTTTGGTCATGCGCAGATGTTCGTATCACTGCG
AGAGGAAAGCAAAAACCACAGAAAGCGAGGGACACTGCGCTCTCAAAAGA
AGATGAGGCACCTATGAAGAAGCCTAAAAAGGCCCCAAATTCCCCAGTAC
TGGAAGAACCGAAGCGTCCAAAGCCCCAATCGGGGGATACGAGCAAGCCG
CTATCACAGGCAACGAATACTAGCAGACCAGAAAAGGGAAGGGATTCATC
GAAGAAAAAGAAACCGAGAAAAGGCAGTCCAAAGAGACGTCCAACGCGGA
AAAGATGTATTGCTGAGCATGTTGTTTGCAATGGAAAGGTTCCGTGCTGC
GGTTCAGAGCACGTTTGCGTATACAAGAGCAATCCTGGTGCTTTCGTATG
TGAAATATGGTGGAAGTTATGGAGTGAAGTCAAGGTTGGAACAGAACGTG
CTGTCGTCATAGACGAAGAAGAGAATTTTAACGCTAGAACTGATGTTTTT
GATGTTGAAGAAGTGCATGGACGGCGCGAAGAAGATGAGGAACTTGGTGA
TTATATTGTATACGACAAGGAGTTATAA