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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707414.1 |
| Preferred name | GARS |
| PFAMs | HGTP_anticodon,WHEP-TRS,tRNA-synt_2b |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00055,RC00523 |
| KEGG ko | ko:K01880 |
| KEGG Reaction | R03654 |
| KEGG Pathway | ko00970,map00970 |
| KEGG Module | M00359,M00360 |
| GOs | GO:0000166,GO:0000902,GO:0000904,GO:0000959,GO:0002164,GO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004081,GO:0004551,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006082,GO:0006139,GO:0006351,GO:0006353,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0008144,GO:0008150,GO:0008152,GO:0008796,GO:0009058,GO:0009059,GO:0009117,GO:0009165,GO:0009653,GO:0009791,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0012505,GO:0015959,GO:0015960,GO:0015965,GO:0015966,GO:0016043,GO:0016070,GO:0016358,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016875,GO:0017076,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0022008,GO:0030030,GO:0030097,GO:0030141,GO:0030154,GO:0030182,GO:0030424,GO:0030554,GO:0031175,GO:0031410,GO:0031974,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032989,GO:0032990,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035166,GO:0035167,GO:0035639,GO:0036094,GO:0042221,GO:0042802,GO:0042995,GO:0043005,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046983,GO:0048468,GO:0048513,GO:0048534,GO:0048542,GO:0048569,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048732,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0055086,GO:0070013,GO:0070062,GO:0070127,GO:0070150,GO:0071704,GO:0071840,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:0097458,GO:0097659,GO:0097708,GO:0098791,GO:0099503,GO:0120025,GO:0120036,GO:0120039,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903561 |
| Evalue | 4.22e-231 |
| EggNOG OGs | COG0423@1|root,KOG2298@2759|Eukaryota |
| EC | 6.1.1.14 |
| Description | glycyl-tRNA aminoacylation |
| COG category | J |
| BiGG Reaction | iMM904.YPR081C,iND750.YPR081C |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9485.t1.start1 | Gcaud9485.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_998_length_15307_cov_4.891167 5172..5174 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9485.t1.stop1 | Gcaud9485.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_998_length_15307_cov_4.891167 7245..7247 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9485.t1 ID=Gcaud9485.t1|Name=Gcaud9485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=692bp MTNQLKQLEAAVDSATHAYNTQSNLVAKLRCDPSQAEQLSAAQVQLRQYK RAVDDAQKKLRAQRVDPSQNEAIAARAAAVDVLLRRRFFIAPSFEIYGGV AGLYDYGPPGCAVKNNLLAVWRQHFIVEEAMLELEATCLTPAAVLKASGH VEKFNDLMVTDVLTAAPYRADHLLRDHLLQLLETEPHHALRDEMSYLLAT LDELDQAQMDQYLAKYEVKAPETKNDITPCAPFNLMFDTSIGPSGKQVGY LRPETAQGIFVNFKRLLETVGGKLPFACAQIGLSFRNEIKPRGGLLRVRE FQQAEIEHFVNPDDKSHPKFDSVKHVSINMFGREQQLSRECVPLRITVGE AVEKGLINNETLGYFIARTSLFVEKVGMNMQLVRFRQHLEHEMAHYASDC WDLEIKSLSANKWVECAGLADRSAYDLRNHSEKSGIELTARENYAEPRRV EQLVCDAKKSVLGRTFKKDAQVIMKALAEKGERELEQLRQQLESDGKVQV SGFEITRDHVSFRTEIKSVSGRSFYPSVIEPSFGVGRILCCLWEHAYYVR EGEEDADAQTVRAVLALPACVAPVKCTVLPLSKNAVFERVVEQVRAALSA RGLMSRVEDSGISIGRRYSRADEMGTPFGITVDFQSVEDGSVTLRERDST RQVRGSVADAVAAVAEMVAGRRSWAHVQRSMTPFDAAAAPS* back to topspliced messenger RNA >Gcaud9485.t1 ID=Gcaud9485.t1|Name=Gcaud9485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at NODE_998_length_15307_cov_4.891167:5172..7247+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
atgaccaaccaACTCAAGCAACTGGAGGCCGCAGTCGACTCTGCCACACA CGCCTACAACACGCAGAGCAACCTCGTCGCCAAGCTCCGCTGTGATCCCT CGCAAGCCGAACAACTCTCCGCCGCGCAGGTGCAACTGCGTCAGTACAAA CGCGCAGTCGACGACGCTCAAAAAAAGCTCCGCGCCCAACGCGTCGATCC CTCGCAAAACGAAGCCATCGCCGCGCGCGCCGCAGCCGTCGATGTGTTAC TGCGTCGTCGTTTCTTCATCGCACCCTCCTTTGAAATCTACGGCGGTGTA GCCGGTCTGTACGATTACGGTCCGCCCGGCTGTGCCGTCAAGAACAATTT ACTCGCCGTATGGCGTCAGCATTTCATCGTGGAGGAGGCCATGTTGGAAT TGGAGGCCACCTGTCTCACGCCCGCCGCGGTGCTCAAGGCGAGCGGTCAC GTGGAGAAGTTCAATGATCTCATGGTCACTGACGTGCTCACTGCAGCGCC CTATCGCGCCGATCATCTGCTACGCGATCATCTGCTGCAGTTGCTTGAAA CCGAACCACACCATGCGCTACGCGACGAGATGTCCTATTTGCTGGCCACG CTCGATGAGCTTGACCAAGCGCAGATGGATCAATATCTCGCCAAGTACGA GGTGAAGGCGCCGGAAACGAAAAACGACATCACGCCGTGCGCGCCGTTCA ACCTCATGTTCGACACCTCCATCGGCCCGTCCGGCAAGCAGGTCGGCTAC CTGCGACCGGAGACCGCGCAGGGTATTTTTGTCAACTTTAAGCGACTGCT CGAGACGGTGGGCGGCAAGCTGCCGTTTGCGTGCGCTCAGATCGGTCTGT CGTTCCGAAACGAAATCAAGCCAAGAGGTGGCTTGTTGCGTGTGCGCGAG TTTCAGCAGGCTGAGATCGAGCATTTTGTGAACCCGGACGATAAGTCACA CCCCAAGTTTGACAGCGTCAAGCACGTGAGCATCAACATGTTCGGCCGGG AGCAGCAGCTGTCGCGGGAGTGCGTGCCGCTGAGGATTACGGTGGGCGAG GCGGTGGAGAAAGGGCTCATCAACAACGAGACGTTGGGCTACTTCATTGC GCGAACGAGCTTGTTTGTGGAGAAGGTGGGCATGAACATGCAGCTGGTGC GCTTCCGTCAGCATCTGGAGCACGAGATGGCGCATTATGCGTCGGACTGT TGGGATTTGGAGATCAAGAGCTTGTCGGCAAACAAGTGGGTGGAGTGCGC GGGACTGGCCGATCGCTCGGCGTACGATCTGCGCAATCACTCCGAAAAGT CTGGCATCGAGTTGACGGCGCGCGAGAACTACGCGGAGCCGCGGCGGGTG GAGCAGCTGGTGTGCGACGCGAAGAAGAGCGTGCTCGGGCGCACGTTCAA GAAGGACGCGCAGGTGATCATGAAGGCGCTGGCGGAGAAGGGCGAGCGCG AGCTGGAACAGCTCAGGCAGCAGCTGGAAAGCGACGGCAAGGTGCAGGTG AGCGGCTTTGAGATCACGCGCGACCACGTGTCGTTCCGCACCGAGATCAA GTCGGTGTCGGGGCGCAGCTTCTACCCGTCGGTGATCGAGCCCAGTTTCG GCGTGGGGCGCATCCTGTGCTGCCTGTGGGAGCACGCGTACTACGTGCGC GAGGGCGAGGAGGACGCGGACGCGCAGACGGTGCGCGCGGTGCTGGCGCT GCCGGCGTGCGTGGCGCCCGTCAAGTGCACGGTGCTGCCGCTGAGCAAGA ACGCCGTGTTCGAGCGCGTGGTGGAGCAGGTGCGCGCGGCGCTGAGCGCG CGCGGGCTGATGAGCCGCGTGGAGGACTCGGGCATCTCGATCGGGCGGCG CTACTCGCGCGCGGACGAAATGGGCACGCCGTTCGGCATCACGGTGGACT TCCAGTCGGTGGAGGACGGCTCGGTGACGCTGCGCGAGCGCGACTCCACG Cggcaggtgcgcgggtcggtggcggacgcggtggcggcggtggcggagat ggtggcggggcggCGCTCGTGGGCGCACGTGCAGCGCAGCATGACGCCGT TTGACGCCGCGGCGGCGCCCAGCTGA back to topprotein sequence of Gcaud9485.t1 >Gcaud9485.t1 ID=Gcaud9485.t1|Name=Gcaud9485.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=692bp
MTNQLKQLEAAVDSATHAYNTQSNLVAKLRCDPSQAEQLSAAQVQLRQYK RAVDDAQKKLRAQRVDPSQNEAIAARAAAVDVLLRRRFFIAPSFEIYGGV AGLYDYGPPGCAVKNNLLAVWRQHFIVEEAMLELEATCLTPAAVLKASGH VEKFNDLMVTDVLTAAPYRADHLLRDHLLQLLETEPHHALRDEMSYLLAT LDELDQAQMDQYLAKYEVKAPETKNDITPCAPFNLMFDTSIGPSGKQVGY LRPETAQGIFVNFKRLLETVGGKLPFACAQIGLSFRNEIKPRGGLLRVRE FQQAEIEHFVNPDDKSHPKFDSVKHVSINMFGREQQLSRECVPLRITVGE AVEKGLINNETLGYFIARTSLFVEKVGMNMQLVRFRQHLEHEMAHYASDC WDLEIKSLSANKWVECAGLADRSAYDLRNHSEKSGIELTARENYAEPRRV EQLVCDAKKSVLGRTFKKDAQVIMKALAEKGERELEQLRQQLESDGKVQV SGFEITRDHVSFRTEIKSVSGRSFYPSVIEPSFGVGRILCCLWEHAYYVR EGEEDADAQTVRAVLALPACVAPVKCTVLPLSKNAVFERVVEQVRAALSA RGLMSRVEDSGISIGRRYSRADEMGTPFGITVDFQSVEDGSVTLRERDST RQVRGSVADAVAAVAEMVAGRRSWAHVQRSMTPFDAAAAPS* back to topmRNA from alignment at NODE_998_length_15307_cov_4.891167:5172..7247+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9485.t1 ID=Gcaud9485.t1|Name=Gcaud9485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at NODE_998_length_15307_cov_4.891167:5172..7247+ (Gracilaria caudata M_176_S67 male) atgaccaaccaACTCAAGCAACTGGAGGCCGCAGTCGACTCTGCCACACA
CGCCTACAACACGCAGAGCAACCTCGTCGCCAAGCTCCGCTGTGATCCCT
CGCAAGCCGAACAACTCTCCGCCGCGCAGGTGCAACTGCGTCAGTACAAA
CGCGCAGTCGACGACGCTCAAAAAAAGCTCCGCGCCCAACGCGTCGATCC
CTCGCAAAACGAAGCCATCGCCGCGCGCGCCGCAGCCGTCGATGTGTTAC
TGCGTCGTCGTTTCTTCATCGCACCCTCCTTTGAAATCTACGGCGGTGTA
GCCGGTCTGTACGATTACGGTCCGCCCGGCTGTGCCGTCAAGAACAATTT
ACTCGCCGTATGGCGTCAGCATTTCATCGTGGAGGAGGCCATGTTGGAAT
TGGAGGCCACCTGTCTCACGCCCGCCGCGGTGCTCAAGGCGAGCGGTCAC
GTGGAGAAGTTCAATGATCTCATGGTCACTGACGTGCTCACTGCAGCGCC
CTATCGCGCCGATCATCTGCTACGCGATCATCTGCTGCAGTTGCTTGAAA
CCGAACCACACCATGCGCTACGCGACGAGATGTCCTATTTGCTGGCCACG
CTCGATGAGCTTGACCAAGCGCAGATGGATCAATATCTCGCCAAGTACGA
GGTGAAGGCGCCGGAAACGAAAAACGACATCACGCCGTGCGCGCCGTTCA
ACCTCATGTTCGACACCTCCATCGGCCCGTCCGGCAAGCAGGTCGGCTAC
CTGCGACCGGAGACCGCGCAGGGTATTTTTGTCAACTTTAAGCGACTGCT
CGAGACGGTGGGCGGCAAGCTGCCGTTTGCGTGCGCTCAGATCGGTCTGT
CGTTCCGAAACGAAATCAAGCCAAGAGGTGGCTTGTTGCGTGTGCGCGAG
TTTCAGCAGGCTGAGATCGAGCATTTTGTGAACCCGGACGATAAGTCACA
CCCCAAGTTTGACAGCGTCAAGCACGTGAGCATCAACATGTTCGGCCGGG
AGCAGCAGCTGTCGCGGGAGTGCGTGCCGCTGAGGATTACGGTGGGCGAG
GCGGTGGAGAAAGGGCTCATCAACAACGAGACGTTGGGCTACTTCATTGC
GCGAACGAGCTTGTTTGTGGAGAAGGTGGGCATGAACATGCAGCTGGTGC
GCTTCCGTCAGCATCTGGAGCACGAGATGGCGCATTATGCGTCGGACTGT
TGGGATTTGGAGATCAAGAGCTTGTCGGCAAACAAGTGGGTGGAGTGCGC
GGGACTGGCCGATCGCTCGGCGTACGATCTGCGCAATCACTCCGAAAAGT
CTGGCATCGAGTTGACGGCGCGCGAGAACTACGCGGAGCCGCGGCGGGTG
GAGCAGCTGGTGTGCGACGCGAAGAAGAGCGTGCTCGGGCGCACGTTCAA
GAAGGACGCGCAGGTGATCATGAAGGCGCTGGCGGAGAAGGGCGAGCGCG
AGCTGGAACAGCTCAGGCAGCAGCTGGAAAGCGACGGCAAGGTGCAGGTG
AGCGGCTTTGAGATCACGCGCGACCACGTGTCGTTCCGCACCGAGATCAA
GTCGGTGTCGGGGCGCAGCTTCTACCCGTCGGTGATCGAGCCCAGTTTCG
GCGTGGGGCGCATCCTGTGCTGCCTGTGGGAGCACGCGTACTACGTGCGC
GAGGGCGAGGAGGACGCGGACGCGCAGACGGTGCGCGCGGTGCTGGCGCT
GCCGGCGTGCGTGGCGCCCGTCAAGTGCACGGTGCTGCCGCTGAGCAAGA
ACGCCGTGTTCGAGCGCGTGGTGGAGCAGGTGCGCGCGGCGCTGAGCGCG
CGCGGGCTGATGAGCCGCGTGGAGGACTCGGGCATCTCGATCGGGCGGCG
CTACTCGCGCGCGGACGAAATGGGCACGCCGTTCGGCATCACGGTGGACT
TCCAGTCGGTGGAGGACGGCTCGGTGACGCTGCGCGAGCGCGACTCCACG
Cggcaggtgcgcgggtcggtggcggacgcggtggcggcggtggcggagat
ggtggcggggcggCGCTCGTGGGCGCACGTGCAGCGCAGCATGACGCCGT
TTGACGCCGCGGCGGCGCCCAGCTGA back to topCoding sequence (CDS) from alignment at NODE_998_length_15307_cov_4.891167:5172..7247+ >Gcaud9485.t1 ID=Gcaud9485.t1|Name=Gcaud9485.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2076bp|location=Sequence derived from alignment at NODE_998_length_15307_cov_4.891167:5172..7247+ (Gracilaria caudata M_176_S67 male) atgaccaaccaACTCAAGCAACTGGAGGCCGCAGTCGACTCTGCCACACA CGCCTACAACACGCAGAGCAACCTCGTCGCCAAGCTCCGCTGTGATCCCT CGCAAGCCGAACAACTCTCCGCCGCGCAGGTGCAACTGCGTCAGTACAAA CGCGCAGTCGACGACGCTCAAAAAAAGCTCCGCGCCCAACGCGTCGATCC CTCGCAAAACGAAGCCATCGCCGCGCGCGCCGCAGCCGTCGATGTGTTAC TGCGTCGTCGTTTCTTCATCGCACCCTCCTTTGAAATCTACGGCGGTGTA GCCGGTCTGTACGATTACGGTCCGCCCGGCTGTGCCGTCAAGAACAATTT ACTCGCCGTATGGCGTCAGCATTTCATCGTGGAGGAGGCCATGTTGGAAT TGGAGGCCACCTGTCTCACGCCCGCCGCGGTGCTCAAGGCGAGCGGTCAC GTGGAGAAGTTCAATGATCTCATGGTCACTGACGTGCTCACTGCAGCGCC CTATCGCGCCGATCATCTGCTACGCGATCATCTGCTGCAGTTGCTTGAAA CCGAACCACACCATGCGCTACGCGACGAGATGTCCTATTTGCTGGCCACG CTCGATGAGCTTGACCAAGCGCAGATGGATCAATATCTCGCCAAGTACGA GGTGAAGGCGCCGGAAACGAAAAACGACATCACGCCGTGCGCGCCGTTCA ACCTCATGTTCGACACCTCCATCGGCCCGTCCGGCAAGCAGGTCGGCTAC CTGCGACCGGAGACCGCGCAGGGTATTTTTGTCAACTTTAAGCGACTGCT CGAGACGGTGGGCGGCAAGCTGCCGTTTGCGTGCGCTCAGATCGGTCTGT CGTTCCGAAACGAAATCAAGCCAAGAGGTGGCTTGTTGCGTGTGCGCGAG TTTCAGCAGGCTGAGATCGAGCATTTTGTGAACCCGGACGATAAGTCACA CCCCAAGTTTGACAGCGTCAAGCACGTGAGCATCAACATGTTCGGCCGGG AGCAGCAGCTGTCGCGGGAGTGCGTGCCGCTGAGGATTACGGTGGGCGAG GCGGTGGAGAAAGGGCTCATCAACAACGAGACGTTGGGCTACTTCATTGC GCGAACGAGCTTGTTTGTGGAGAAGGTGGGCATGAACATGCAGCTGGTGC GCTTCCGTCAGCATCTGGAGCACGAGATGGCGCATTATGCGTCGGACTGT TGGGATTTGGAGATCAAGAGCTTGTCGGCAAACAAGTGGGTGGAGTGCGC GGGACTGGCCGATCGCTCGGCGTACGATCTGCGCAATCACTCCGAAAAGT CTGGCATCGAGTTGACGGCGCGCGAGAACTACGCGGAGCCGCGGCGGGTG GAGCAGCTGGTGTGCGACGCGAAGAAGAGCGTGCTCGGGCGCACGTTCAA GAAGGACGCGCAGGTGATCATGAAGGCGCTGGCGGAGAAGGGCGAGCGCG AGCTGGAACAGCTCAGGCAGCAGCTGGAAAGCGACGGCAAGGTGCAGGTG AGCGGCTTTGAGATCACGCGCGACCACGTGTCGTTCCGCACCGAGATCAA GTCGGTGTCGGGGCGCAGCTTCTACCCGTCGGTGATCGAGCCCAGTTTCG GCGTGGGGCGCATCCTGTGCTGCCTGTGGGAGCACGCGTACTACGTGCGC GAGGGCGAGGAGGACGCGGACGCGCAGACGGTGCGCGCGGTGCTGGCGCT GCCGGCGTGCGTGGCGCCCGTCAAGTGCACGGTGCTGCCGCTGAGCAAGA ACGCCGTGTTCGAGCGCGTGGTGGAGCAGGTGCGCGCGGCGCTGAGCGCG CGCGGGCTGATGAGCCGCGTGGAGGACTCGGGCATCTCGATCGGGCGGCG CTACTCGCGCGCGGACGAAATGGGCACGCCGTTCGGCATCACGGTGGACT TCCAGTCGGTGGAGGACGGCTCGGTGACGCTGCGCGAGCGCGACTCCACG Cggcaggtgcgcgggtcggtggcggacgcggtggcggcggtggcggagat ggtggcggggcggCGCTCGTGGGCGCACGTGCAGCGCAGCATGACGCCGT TTGACGCCGCGGCGGCGCCCAGCTGA back to top
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