Gcaud2261.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2261.t1
Unique Name	Gcaud2261.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	458

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_996_length_15378_cov_4.026820	contig	NODE_996_length_15378_cov_4.026820:8271..9644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004346694.1
Preferred name	MAEA
PFAMs	CLTH,LisH
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K03245,ko:K18624
KEGG Pathway	ko03013,map03013
GOs	GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005938,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007010,GO:0007155,GO:0007275,GO:0007346,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0010941,GO:0015629,GO:0015630,GO:0016020,GO:0016021,GO:0016043,GO:0016363,GO:0019222,GO:0019538,GO:0019941,GO:0022610,GO:0030097,GO:0030099,GO:0030154,GO:0030163,GO:0030218,GO:0030863,GO:0030864,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032153,GO:0032155,GO:0032501,GO:0032502,GO:0032991,GO:0033032,GO:0033033,GO:0034101,GO:0034399,GO:0034657,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043353,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0045721,GO:0045912,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048821,GO:0048822,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0060548,GO:0061515,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0070013,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0099568,GO:1901564,GO:1901565,GO:1901575
Evalue	4e-86
EggNOG OGs	KOG0396@1\|root,KOG0396@2759\|Eukaryota,38BDG@33154\|Opisthokonta
Description	macrophage erythroblast attacher
COG category	J
BRITE	ko00000,ko00001,ko03009,ko03012,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2261	Gcaud2261	Gracilaria caudata M_176_S67 male	gene	NODE_996_length_15378_cov_4.026820 8271..9644 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2261.t1.start1	Gcaud2261.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_996_length_15378_cov_4.026820 8271..8273 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2261.t1.CDS1	Gcaud2261.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_996_length_15378_cov_4.026820 8271..9644 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2261.t1.exon1	Gcaud2261.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_996_length_15378_cov_4.026820 8271..9644 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2261.t1.stop1	Gcaud2261.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_996_length_15378_cov_4.026820 9642..9644 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2261.t1	Gcaud2261.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_996_length_15378_cov_4.026820 8271..9644 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_996_length_15378_cov_4.026820:8271..9644+
coding sequence from alignment at NODE_996_length_15378_cov_4.026820:8271..9644+

mRNA sequence

>Gcaud2261.t1 ID=Gcaud2261.t1|Name=Gcaud2261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=458bp
MEDLQMEHGFLKAPWEVLVRNFRAGHKPLAKEVDMFSNAVSQLMQHVSER
ANNPATASQPLIKPESITALENKLTGLKRKLESARSNDEQGMRRCFMRIR
HLQTQAPPTPQLMEYPPHVTPQHKHEAQLMDVDSSLKPSTNGHTPDVHAP
NGSPRALHEAAEDDERDAAAELAERQSRWEKMRLNRALVDYMLREGMYDT
AEALAKSHGIEQIVDMSIFRESRVVIEALRRRDCSEGLRWCNENKRRLQK
VQSKLEFRLRLQEFVEYARAGRKTDAIAYMKKYLSSANCDNERLLDIQRF
MTLLCFDPSTSCQPYKDMFSERKWHELEVMFKHDNYRLHGLTRESTIEIM
LKAGLASLKTRKCGTEAERKPNCPTCVEPFLSLAQSLPRGRHENSVLVCS
ISGEIMDENNLPMALPNGNVYSTNALRKIADENCGEVIDPRSGDKARLKD
LRKIFIM*

spliced messenger RNA

>Gcaud2261.t1 ID=Gcaud2261.t1|Name=Gcaud2261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1374bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:8271..9644+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACCTTCAGATGGAGCACGGCTTTCTGAAGGCCCCCTGGGAGGT
GCTGGTCCGCAATTTTCGCGCCGGACACAAGCCGCTGGCCAAGGAGGTCG
ACATGTTCTCCAACGCCGTCTCGCAGCTCATGCAGCACGTTTCGGAGCGA
GCCAATAACCCCGCTACCGCGTCGCAACCACTCATCAAGCCCGAGAGCAT
CACCGCCCTGGAGAACAAGCTCACCGGTCTCAAGCGCAAGCTCGAGTCCG
CCAGATCCAACGATGAGCAGGGCATGCGTCGCTGCTTCATGCGCATCCGT
CATCTGCAGACGCAGGCTCCGCCCACCCCGCAGCTCATGGAATACCCCCC
TCACGTCACTCCGCAGCACAAGCACGAGGCGCAGCTCATGGATGTCGATT
CGTCGCTCAAGCCCTCCACAAACGGTCACACCCCCGATGTGCATGCTCCC
AACGGGTCGCCGCGCGCGCTCCACGAGGCTGCGGAGGATGACGAGCGTGA
TGCTGCCGCAGAACTCGCTGAAAGACAATCTCGCTGGGAGAAGATGCGCC
TGAATCGAGCGCTGGTGGACTACATGCTGCGCGAAGGCATGTACGACACC
GCCGAAGCGTTGGCAAAGTCACACGGCATCGAACAGATTGTGGACATGAG
CATTTTTCGAGAGTCTCGTGTTGTTATTGAGGCTTTGCGACGACGCGACT
GTTCAGAGGGCTTGAGATGGTGCAATGAGAACAAACGTCGTCTGCAAAAG
GTGCAGAGCAAGCTCGAATTTCGTTTGCGATTGCAGGAGTTTGTTGAGTA
TGCACGCGCCGGTCGTAAGACGGATGCCATTGCCTACATGAAGAAGTATC
TCTCGTCCGCAAACTGTGATAATGAGCGCCTGTTGGATATTCAAAGGTTC
ATGACCTTGCTCTGTTTTGATCCCTCTACGTCGTGCCAGCCTTACAAGGA
CATGTTTTCTGAACGCAAATGGCACGAGCTTGAGGTTATGTTTAAGCACG
ACAACTATCGCCTGCACGGGCTCACCCGCGAAAGCACTATTGAGATCATG
CTCAAGGCCGGTTTAGCAAGCTTGAAAACCAGAAAATGCGGCACCGAGGC
TGAACGAAAGCCCAATTGCCCAACATGTGTTGAACCGTTTCTCAGTTTGG
CGCAATCATTACCTCGCGGGCGGCATGAGAACTCTGTGTTGGTGTGTTCG
ATCAGTGGCGAGATCATGGACGAGAACAACCTCCCTATGGCTCTTCCAAA
TGGTAATGTATACAGCACCAACGCCTTGCGGAAGATAGCAGACGAGAACT
GCGGCGAAGTTATTGATCCTCGGAGTGGTGACAAGGCGCGCCTCAAGGAT
CTACGGAAGATTTTCATCATGTAA

protein sequence of Gcaud2261.t1

>Gcaud2261.t1 ID=Gcaud2261.t1|Name=Gcaud2261.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=458bp
MEDLQMEHGFLKAPWEVLVRNFRAGHKPLAKEVDMFSNAVSQLMQHVSER
ANNPATASQPLIKPESITALENKLTGLKRKLESARSNDEQGMRRCFMRIR
HLQTQAPPTPQLMEYPPHVTPQHKHEAQLMDVDSSLKPSTNGHTPDVHAP
NGSPRALHEAAEDDERDAAAELAERQSRWEKMRLNRALVDYMLREGMYDT
AEALAKSHGIEQIVDMSIFRESRVVIEALRRRDCSEGLRWCNENKRRLQK
VQSKLEFRLRLQEFVEYARAGRKTDAIAYMKKYLSSANCDNERLLDIQRF
MTLLCFDPSTSCQPYKDMFSERKWHELEVMFKHDNYRLHGLTRESTIEIM
LKAGLASLKTRKCGTEAERKPNCPTCVEPFLSLAQSLPRGRHENSVLVCS
ISGEIMDENNLPMALPNGNVYSTNALRKIADENCGEVIDPRSGDKARLKD
LRKIFIM*

mRNA from alignment at NODE_996_length_15378_cov_4.026820:8271..9644+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2261.t1 ID=Gcaud2261.t1|Name=Gcaud2261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1374bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:8271..9644+ (Gracilaria caudata M_176_S67 male)
ATGGAAGACCTTCAGATGGAGCACGGCTTTCTGAAGGCCCCCTGGGAGGT
GCTGGTCCGCAATTTTCGCGCCGGACACAAGCCGCTGGCCAAGGAGGTCG
ACATGTTCTCCAACGCCGTCTCGCAGCTCATGCAGCACGTTTCGGAGCGA
GCCAATAACCCCGCTACCGCGTCGCAACCACTCATCAAGCCCGAGAGCAT
CACCGCCCTGGAGAACAAGCTCACCGGTCTCAAGCGCAAGCTCGAGTCCG
CCAGATCCAACGATGAGCAGGGCATGCGTCGCTGCTTCATGCGCATCCGT
CATCTGCAGACGCAGGCTCCGCCCACCCCGCAGCTCATGGAATACCCCCC
TCACGTCACTCCGCAGCACAAGCACGAGGCGCAGCTCATGGATGTCGATT
CGTCGCTCAAGCCCTCCACAAACGGTCACACCCCCGATGTGCATGCTCCC
AACGGGTCGCCGCGCGCGCTCCACGAGGCTGCGGAGGATGACGAGCGTGA
TGCTGCCGCAGAACTCGCTGAAAGACAATCTCGCTGGGAGAAGATGCGCC
TGAATCGAGCGCTGGTGGACTACATGCTGCGCGAAGGCATGTACGACACC
GCCGAAGCGTTGGCAAAGTCACACGGCATCGAACAGATTGTGGACATGAG
CATTTTTCGAGAGTCTCGTGTTGTTATTGAGGCTTTGCGACGACGCGACT
GTTCAGAGGGCTTGAGATGGTGCAATGAGAACAAACGTCGTCTGCAAAAG
GTGCAGAGCAAGCTCGAATTTCGTTTGCGATTGCAGGAGTTTGTTGAGTA
TGCACGCGCCGGTCGTAAGACGGATGCCATTGCCTACATGAAGAAGTATC
TCTCGTCCGCAAACTGTGATAATGAGCGCCTGTTGGATATTCAAAGGTTC
ATGACCTTGCTCTGTTTTGATCCCTCTACGTCGTGCCAGCCTTACAAGGA
CATGTTTTCTGAACGCAAATGGCACGAGCTTGAGGTTATGTTTAAGCACG
ACAACTATCGCCTGCACGGGCTCACCCGCGAAAGCACTATTGAGATCATG
CTCAAGGCCGGTTTAGCAAGCTTGAAAACCAGAAAATGCGGCACCGAGGC
TGAACGAAAGCCCAATTGCCCAACATGTGTTGAACCGTTTCTCAGTTTGG
CGCAATCATTACCTCGCGGGCGGCATGAGAACTCTGTGTTGGTGTGTTCG
ATCAGTGGCGAGATCATGGACGAGAACAACCTCCCTATGGCTCTTCCAAA
TGGTAATGTATACAGCACCAACGCCTTGCGGAAGATAGCAGACGAGAACT
GCGGCGAAGTTATTGATCCTCGGAGTGGTGACAAGGCGCGCCTCAAGGAT
CTACGGAAGATTTTCATCATGTAA

Coding sequence (CDS) from alignment at NODE_996_length_15378_cov_4.026820:8271..9644+

>Gcaud2261.t1 ID=Gcaud2261.t1|Name=Gcaud2261.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1374bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:8271..9644+ (Gracilaria caudata M_176_S67 male)
ATGGAAGACCTTCAGATGGAGCACGGCTTTCTGAAGGCCCCCTGGGAGGT
GCTGGTCCGCAATTTTCGCGCCGGACACAAGCCGCTGGCCAAGGAGGTCG
ACATGTTCTCCAACGCCGTCTCGCAGCTCATGCAGCACGTTTCGGAGCGA
GCCAATAACCCCGCTACCGCGTCGCAACCACTCATCAAGCCCGAGAGCAT
CACCGCCCTGGAGAACAAGCTCACCGGTCTCAAGCGCAAGCTCGAGTCCG
CCAGATCCAACGATGAGCAGGGCATGCGTCGCTGCTTCATGCGCATCCGT
CATCTGCAGACGCAGGCTCCGCCCACCCCGCAGCTCATGGAATACCCCCC
TCACGTCACTCCGCAGCACAAGCACGAGGCGCAGCTCATGGATGTCGATT
CGTCGCTCAAGCCCTCCACAAACGGTCACACCCCCGATGTGCATGCTCCC
AACGGGTCGCCGCGCGCGCTCCACGAGGCTGCGGAGGATGACGAGCGTGA
TGCTGCCGCAGAACTCGCTGAAAGACAATCTCGCTGGGAGAAGATGCGCC
TGAATCGAGCGCTGGTGGACTACATGCTGCGCGAAGGCATGTACGACACC
GCCGAAGCGTTGGCAAAGTCACACGGCATCGAACAGATTGTGGACATGAG
CATTTTTCGAGAGTCTCGTGTTGTTATTGAGGCTTTGCGACGACGCGACT
GTTCAGAGGGCTTGAGATGGTGCAATGAGAACAAACGTCGTCTGCAAAAG
GTGCAGAGCAAGCTCGAATTTCGTTTGCGATTGCAGGAGTTTGTTGAGTA
TGCACGCGCCGGTCGTAAGACGGATGCCATTGCCTACATGAAGAAGTATC
TCTCGTCCGCAAACTGTGATAATGAGCGCCTGTTGGATATTCAAAGGTTC
ATGACCTTGCTCTGTTTTGATCCCTCTACGTCGTGCCAGCCTTACAAGGA
CATGTTTTCTGAACGCAAATGGCACGAGCTTGAGGTTATGTTTAAGCACG
ACAACTATCGCCTGCACGGGCTCACCCGCGAAAGCACTATTGAGATCATG
CTCAAGGCCGGTTTAGCAAGCTTGAAAACCAGAAAATGCGGCACCGAGGC
TGAACGAAAGCCCAATTGCCCAACATGTGTTGAACCGTTTCTCAGTTTGG
CGCAATCATTACCTCGCGGGCGGCATGAGAACTCTGTGTTGGTGTGTTCG
ATCAGTGGCGAGATCATGGACGAGAACAACCTCCCTATGGCTCTTCCAAA
TGGTAATGTATACAGCACCAACGCCTTGCGGAAGATAGCAGACGAGAACT
GCGGCGAAGTTATTGATCCTCGGAGTGGTGACAAGGCGCGCCTCAAGGAT
CTACGGAAGATTTTCATCATGTAA