Gcaud2257.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2257.t1
Unique NameGcaud2257.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length333
Homology
BLAST of Gcaud2257.t1 vs. uniprot
Match: A0A2V3J4X4_9FLOR (UV excision repair protein RAD23 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4X4_9FLOR)

HSP 1 Score: 401 bits (1031), Expect = 1.000e-135
Identity = 231/310 (74.52%), Postives = 251/310 (80.97%), Query Frame = 0
Query:   28 SGSSSLVVGQEYEQTVRRICEMGFPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPXXXXXXXXXXXXXXXXTGATP---NQSEPNAPAAGQQTSTRSAAAATPFNMFEAA--GNSPSAGGGGGSGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQLAQAMAGAXXXREGPXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQLRADQAANAAAXXXXAEQDNSGQNQSDRPDQGNQGPPA 332
            SG+S+LVVG EYEQTVRRICEMGFPEA+VK ALRAAFNNPDRAVDYLFNGIPE+   + P      XXXXXXXXX     P   N +    PA+ Q +  R+AA  TPFNMF     GNSPS   GGG+GSLDFLR+VPQFN MRRLIQ+NP +LPQLLQQ+EN+NPS+MALIE NQAEFTRLINEP+ EGEDGGD AMEQLAQAMAGA    EG   GQILVTEEEHEQLHRLNELAAGFGLE+AQVVETWLACDRNENLAANYLVENAEQLRADQAANAAA     EQDN+  + SDRPDQGNQGPPA
Sbjct:  131 SGASALVVGPEYEQTVRRICEMGFPEADVKNALRAAFNNPDRAVDYLFNGIPENLQTTGPPAAAPPXXXXXXXXXSQTPPPPAANATRATPPASNQPSVPRTAAQGTPFNMFGGTTDGNSPS---GGGTGSLDFLRAVPQFNQMRRLIQANPTLLPQLLQQIENINPSIMALIEANQAEFTRLINEPVREGEDGGDEAMEQLAQAMAGAGASGEGLGPGQILVTEEEHEQLHRLNELAAGFGLEQAQVVETWLACDRNENLAANYLVENAEQLRADQAANAAADPATGEQDNNAHDPSDRPDQGNQGPPA 437          
BLAST of Gcaud2257.t1 vs. uniprot
Match: M2Y6W5_GALSU (UV excision repair protein RAD23 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y6W5_GALSU)

HSP 1 Score: 204 bits (520), Expect = 6.090e-59
Identity = 120/273 (43.96%), Postives = 159/273 (58.24%), Query Frame = 0
Query:   30 SSSLVVGQEYEQTVRRICEMGFPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPXXXXXXXXXXXXXXXXTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGG----GGSGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQLAQAMAG----AXXXREGPXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQ 294
            SS  V+G +YE TV+ + EMGF E +VK+ALRAAF+NPDRAV+YLFNGIPE+                      T  T  Q E    ++G  +    A  + PFNMFE   +  +  GG    G +GSLDFL  +PQFN+MRRLIQ+NP +L  +LQ+L   NPSL+ LI  NQ EF RL+NEP  + E   D  +++L  +++G         E      I V+ EE EQ+ RL  L    G+ RA ++E WLACDRNE LAANY++ N E+
Sbjct:  143 SSDFVIGSQYETTVKNLMEMGFEEQQVKRALRAAFHNPDRAVEYLFNGIPENL--ERELGQTSLPERTSPQVGHTDRTATQ-ENRTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGSTGSLDFLTRIPQFNVMRRLIQANPRILQPMLQELAQANPSLLDLIHQNQQEFVRLLNEPTEDSEGLSDEQVQELLNSISGLSEGGNTGEESSGVSYIQVSPEEREQIERLESLVGPMGVSRAAILEAWLACDRNEELAANYILSNLEE 412          
BLAST of Gcaud2257.t1 vs. uniprot
Match: A0A5J4YT12_PORPP (UV excision repair protein RAD23 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT12_PORPP)

HSP 1 Score: 195 bits (496), Expect = 2.310e-55
Identity = 132/308 (42.86%), Postives = 168/308 (54.55%), Query Frame = 0
Query:    5 TPAPEPQSTXVASQXXXXXXXXPSGSSSLVVGQEYEQTVRRICEMGFPEAE-VKKALRAAFNNPDRAVDYLFNG-IPESAMPSAPXXXXXXXXXXXXXXXXTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGG------GSGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQLAQAMAGAXXXREG--------PXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQLR 296
            TPA  P S   A+         P  ++ + +G+++E +V+ I  MGF + + V++ALRAA+NNPDRAV+YL +G +PE A P                    GA P  S   AP +    +  S     PFNMF       SA GGG      GS SLDFLRSVPQF LMRR+IQSNPA+L  LLQQL       + +I +NQ EF RLINEP+   E+   AA+EQ      G      G        P    I VTEEE  Q+ RL E+    G++RAQV+E WLACDRNE +AANYL+EN + LR
Sbjct:  138 TPAANPPSVTTAAAPT------PVSTADIFMGEQFESSVQNIMMMGFSDEQLVRRALRAAYNNPDRAVEYLCSGSVPEVAEPEP------------VPASPAGALPMASTTAAPPSHAPATDNS----QPFNMFAPEPRPESAAGGGXXXXXXGSMSLDFLRSVPQFTLMRRMIQSNPALLSPLLQQLGQAXXXXLQMISENQTEFVRLINEPLTAAEE---AALEQFQDMQGGDLGADFGEGGLPAAPPGTSVIQVTEEERAQIERLEEMVIPMGIDRAQVIEAWLACDRNEEMAANYLLENMDDLR 420          
BLAST of Gcaud2257.t1 vs. uniprot
Match: A0A1X6PB96_PORUM (UV excision repair protein RAD23 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PB96_PORUM)

HSP 1 Score: 187 bits (475), Expect = 3.220e-52
Identity = 125/294 (42.52%), Postives = 160/294 (54.42%), Query Frame = 0
Query:   28 SGSSSLVVGQEYEQTVRRICEMGFPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPXXXXXXXXXXXXXXXXTGA-TPNQSEPNAPAAGQQTST---------------------RSAAAATPFNMFEAAGNSPSAGGGGGSGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQL----AQAMAGAXXXREGPXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQL 295
            S  + LVVG +YE +V ++C+MGF E +VK ALRAAFNNP+RAV+YL NGIP+SA+  AP                TGA TP   + +AP++G Q ++                           TPF MF              +G LDFLR +PQFNLMRR+I +N A+L  LLQQL   NPSL  +I  NQ EF RL+NEP+ E  D     M  L    A +MAG       P  G I VT EE EQ+ RL  L    G+ R  V++ WLAC+++E LAANYL++NA  L
Sbjct:  130 SPGNDLVVGSQYEASVSQLCDMGFAEDQVKAALRAAFNNPERAVEYLSNGIPQSAVEEAPAVVPAAPVGSA-----TGAATPAAMDMDAPSSGTQQASGXXXXXXXXXXXXXXXXXXXXXXXXXXTPFEMFRXXXXXXXXXXX--TGQLDFLRRLPQFNLMRRMIHTNQALLQPLLQQLRQTNPSLFQVINSNQQEFLRLLNEPVSES-DSMSELMRHLSPDEAASMAGGDGAGGAPPPGYITVTPEEAEQIDRLVTLVGPMGVGRNAVLQAWLACEKDEALAANYLLDNAADL 415          
BLAST of Gcaud2257.t1 vs. uniprot
Match: A0A7J7C153_TRIWF (Ubiquitin receptor RAD23 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C153_TRIWF)

HSP 1 Score: 172 bits (437), Expect = 1.840e-47
Identity = 115/283 (40.64%), Postives = 158/283 (55.83%), Query Frame = 0
Query:   16 ASQXXXXXXXXPSGSSSLVVGQEYEQTVRRICEMG---FPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPXXXXXXXXXXXXXXXXTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGGGSGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQLAQAMAGAXXXREGPXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQL 295
            A+Q           +S+LV G   EQT++++ +MG   + +  V +ALRAA+NNP+RAVDYL++GIPE+A  + P                TGATP  S   AP              +PFNMF        +GGGGG GSLDFLR+  QF  +R ++Q+NP +L  +LQ+L   NP L+ +I+++QAEF +LINEP+ + E  GD   +Q  Q M  A           I VT  E E + RL  +    G +RA V+E +LACDRNE LAANYL+ENA  +
Sbjct:  111 AAQESVLSDTYSQAASNLVAGNSLEQTIQQLMDMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVGHNPVSQVTE-----TGATPASSVSQAPNT------------SPFNMFP---QETLSGGGGGDGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLGMIQEHQAEFLQLINEPLEDSE--GDI-FDQPEQDMPHA-----------INVTPAEQEAIERLEAM----GFDRALVIEAFLACDRNEELAANYLLENAADI 355          
BLAST of Gcaud2257.t1 vs. uniprot
Match: A0A7S3UA55_9CHLO (Ubiquitin receptor RAD23 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UA55_9CHLO)

HSP 1 Score: 171 bits (434), Expect = 1.360e-46
Identity = 110/271 (40.59%), Postives = 151/271 (55.72%), Query Frame = 0
Query:   28 SGSSSLVVGQEYEQTVRRICEMGFPEAEVKKALRAAFNNPDRAVDYLFNGIP--ESAMPSAPXXXXXXXXXXXXXXXXTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGGGS-GSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQLAQAMAGAXXXREGPXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQL 295
            S +S LV G E E TV+ I EMGFPE +VK+A+RAAFNNPDRAV+YL  GIP  E+A  S P                     + +E  AP  G  T       A PF+MF+  G            G+LDFLR   QF  +R ++Q+NP +L  +LQ+L   NP L+ LI  NQ EF +L+NEP+PEG     A+ EQL + + G     EG    +I +T EE+E + RL  +    G +RA V++ + ACD++E LAAN+L+E+   +
Sbjct:  162 SAASHLVTGTELEATVKNIVEMGFPEDQVKQAMRAAFNNPDRAVEYLMTGIPATETAAVSNPQPR------------------SATEGGAPEGGAPT-------AQPFDMFQQGGQXXXXXXXXXXXGALDFLRDNQQFQALRTMVQANPQILQPMLQELGKQNPRLLDLINSNQQEFLQLLNEPLPEG-----ASAEQLMEGLMGEGAEGEGHGATEIQITPEENEAIQRLEAM----GFDRALVIQAFFACDKDEALAANFLLEHGNDM 398          
BLAST of Gcaud2257.t1 vs. uniprot
Match: A0A2K1JY94_PHYPA (Ubiquitin receptor RAD23 n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JY94_PHYPA)

HSP 1 Score: 169 bits (427), Expect = 9.860e-46
Identity = 115/266 (43.23%), Postives = 149/266 (56.02%), Query Frame = 0
Query:   30 SSSLVVGQEYEQTVRRICEMG---FPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPXXXXXXXXXXXXXXXXTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGGGSGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQLAQAMAGAXXXREGPXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENA 292
            +S+LV G   E TV++I +MG   +    V +ALRAAFNNP+RAV+YL++GIPESA                       ATP      APA G          A P ++F      P   GGGG+G+LDFLR+ PQF  +R ++Q+NP +L  +LQ+L   NP+L+ LI DNQAEF RLINE   EG +G    + QLA AM  +           I VT EE E + RL     G G ER  V+E +LACD+NE LAANYL+E+A
Sbjct:  144 ASNLVAGNVLETTVQQIMDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPESA------EMRPVGGRSPAVAGVPAATPAAPAQAAPAGGPN--------AAPLDLFPQ--GMPGMAGGGGAGALDFLRNNPQFQALRTMVQANPQILQPMLQELGKQNPALLRLINDNQAEFLRLINEAGAEGAEGD--ILGQLAGAMPQS-----------INVTPEEREAIDRLE----GMGFERTLVIEAFLACDKNEQLAANYLLEHA 376          
BLAST of Gcaud2257.t1 vs. uniprot
Match: UPI000B79654D (ubiquitin receptor RAD23b-like isoform X2 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B79654D)

HSP 1 Score: 167 bits (422), Expect = 1.170e-45
Identity = 112/267 (41.95%), Postives = 152/267 (56.93%), Query Frame = 0
Query:   30 SSSLVVGQEYEQTVRRICEMG---FPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPXXXXXXXXXXXXXXXXTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGG-GSGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQLAQAMAGAXXXREGPXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENA 292
            +S+LV G   +QT+++I +MG   + +  V +ALRAA+NNP+RAVDYL++GIPE+A  + P                 GA P    PN                +P NMF     S +AGGGG G GSLDFLRS  QF  +R ++QSNP +L  +LQ+L   NP ++ +I+++ AEF +LINEP+ E E  GD   +Q+ Q M  A           I VT  E E + RL  +    G +RA V+E +LACDRNE LAANYL+ENA
Sbjct:   83 ASNLVAGNNLDQTIQQIMDMGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVTDFPAGQETEIDA--AGAAPVSGAPNT---------------SPLNMFPQETLSAAAGGGGEGLGSLDFLRSNQQFQALRSMVQSNPQILQPMLQELGKQNPHILRMIQEHHAEFLQLINEPLEESE--GDI-FDQVDQDMPHA-----------INVTPAEQEAIERLEAM----GFDRALVIEAFLACDRNEELAANYLLENA 314          
BLAST of Gcaud2257.t1 vs. uniprot
Match: A0A7S4L218_GUITH (UV excision repair protein RAD23 n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L218_GUITH)

HSP 1 Score: 167 bits (422), Expect = 1.440e-44
Identity = 119/271 (43.91%), Postives = 159/271 (58.67%), Query Frame = 0
Query:   30 SSSLVVGQEYEQTVRRICEMGFPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPXXXXXXXXXXXXXXXXTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGGGSGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPI-PEGEDGGDAAMEQLAQAMAGAXXXREGPXXGQ--ILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQLRA 297
            ++++++G++ E +VR IC MGF E+EV++ALR AFNNPDRAV+ L+NG  + A               XXXXXX GA+P      AP+ G             FNM   A N+  AG GG    L+ LR  PQF  +R  +QS P++LP+LL Q+  VNPSL+A I  NQAEF R++NEP+ PE        +EQ  Q M   XXX    XX    I +T EE +Q+ RL +L    GL+R  V+E WLACD++E LAANYL+ N E + A
Sbjct:  172 NNTILMGEDLEASVREICGMGFAESEVRRALRLAFNNPDRAVEILYNGASDDAQ------QMQNEQPAXXXXXXXGASPE-----APSHGSMP--------LRFNMDALAVNASEAGAGGNQ--LEMLRRDPQFAFVRHCVQSQPSLLPELLLQIGRVNPSLLATINQNQAEFVRIVNEPVSPEELQRSIQFLEQQRQGMXXXXXXXXXXXXXXHTIQLTREELDQVERLEQLVVPMGLDRQAVLEAWLACDKDEQLAANYLLNNLEDILA 421          
BLAST of Gcaud2257.t1 vs. uniprot
Match: A0A803QNE3_CANSA (Ubiquitin receptor RAD23 n=6 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QNE3_CANSA)

HSP 1 Score: 166 bits (419), Expect = 1.680e-44
Identity = 116/267 (43.45%), Postives = 152/267 (56.93%), Query Frame = 0
Query:   30 SSSLVVGQEYEQTVRRICEMG---FPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPXXXXXXXXXXXXXXXXTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGGGS-GSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQAEFTRLINEPIPEGEDGGDAAMEQLAQAMAGAXXXREGPXXGQILVTEEEHEQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENA 292
            +S+LV G   EQTV+++ +MG   +    V +ALRAA+NNP+RAVDYL++GIPE+A  + P                TG T       AP +G   S       +P NMF        AG GGG+ G+LDFLR+ PQF  +R ++QSNP +L  +LQ+L   NP L+ LIE+N AEF +LINEP+ EG +G     +Q  Q M  A           I VT  E E + RL     G G +RA V+E +LACDRNE LAANYL+ENA
Sbjct:  156 ASNLVAGSNLEQTVQQLMDMGGGTWDRETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPAAHFPANQATE-----TGGT------TAPVSGAPNS-------SPLNMFP---QETLAGDGGGALGTLDFLRNNPQFQTLRSMVQSNPQILQPMLQELGKQNPQLLRLIEENHAEFLQLINEPL-EGSEGD--LFDQPDQDMPHA-----------INVTPAEQEAIERLE----GMGFDRALVIEAYLACDRNEELAANYLLENA 383          
The following BLAST results are available for this feature:
BLAST of Gcaud2257.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4X4_9FLOR1.000e-13574.52UV excision repair protein RAD23 n=1 Tax=Gracilari... [more]
M2Y6W5_GALSU6.090e-5943.96UV excision repair protein RAD23 n=1 Tax=Galdieria... [more]
A0A5J4YT12_PORPP2.310e-5542.86UV excision repair protein RAD23 n=1 Tax=Porphyrid... [more]
A0A1X6PB96_PORUM3.220e-5242.52UV excision repair protein RAD23 n=1 Tax=Porphyra ... [more]
A0A7J7C153_TRIWF1.840e-4740.64Ubiquitin receptor RAD23 n=1 Tax=Tripterygium wilf... [more]
A0A7S3UA55_9CHLO1.360e-4640.59Ubiquitin receptor RAD23 n=1 Tax=Picocystis salina... [more]
A0A2K1JY94_PHYPA9.860e-4643.23Ubiquitin receptor RAD23 n=3 Tax=Physcomitrium pat... [more]
UPI000B79654D1.170e-4541.95ubiquitin receptor RAD23b-like isoform X2 n=1 Tax=... [more]
A0A7S4L218_GUITH1.440e-4443.91UV excision repair protein RAD23 n=2 Tax=Guillardi... [more]
A0A803QNE3_CANSA1.680e-4443.45Ubiquitin receptor RAD23 n=6 Tax=Cannabis sativa T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004806UV excision repair protein Rad23PRINTSPR01839RAD23PROTEINcoord: 279..294
score: 50.0
coord: 180..202
score: 46.64
coord: 264..278
score: 42.42
IPR004806UV excision repair protein Rad23TIGRFAMTIGR00601TIGR00601coord: 3..293
e-value: 4.2E-67
score: 225.0
IPR015940Ubiquitin-associated domainSMARTSM00165uba_6coord: 39..76
e-value: 2.3E-12
score: 57.1
coord: 249..290
e-value: 5.3
score: 8.9
IPR015940Ubiquitin-associated domainPFAMPF00627UBAcoord: 38..74
e-value: 1.8E-15
score: 56.4
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 37..77
score: 14.812021
IPR006636Heat shock chaperonin-bindingSMARTSM00727CBMcoord: 152..195
e-value: 0.0015
score: 27.8
NoneNo IPR availableGENE3D1.10.8.10coord: 240..292
e-value: 1.2E-15
score: 59.1
NoneNo IPR availableGENE3D1.10.8.10coord: 32..79
e-value: 5.8E-23
score: 82.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..332
NoneNo IPR availablePANTHERPTHR10621:SF35RAD23 UV EXCISION REPAIR FAMILY PROTEIN-RELATEDcoord: 4..290
NoneNo IPR availablePANTHERPTHR10621UV EXCISION REPAIR PROTEIN RAD23coord: 4..290
IPR015360XPC-binding domainPFAMPF09280XPC-bindingcoord: 154..209
e-value: 4.5E-20
score: 71.1
IPR036353XPC-binding domain superfamilyGENE3D1.10.10.540coord: 144..209
e-value: 1.5E-23
score: 84.1
IPR036353XPC-binding domain superfamilySUPERFAMILY101238XPC-binding domaincoord: 150..216
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 19..80
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 236..292

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_996_length_15378_cov_4.026820contigNODE_996_length_15378_cov_4.026820:2..998 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2257.t1Gcaud2257.t1Gracilaria caudata M_176_S67 malemRNANODE_996_length_15378_cov_4.026820 2..998 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2257.t1 ID=Gcaud2257.t1|Name=Gcaud2257.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=333bp
XPEPTPAPEPQSTPVASQPATSSAAEPSGSSSLVVGQEYEQTVRRICEMG
FPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPPAAFPAATPPPQP
AATTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGGG
SGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQA
EFTRLINEPIPEGEDGGDAAMEQLAQAMAGAGGGREGPGPGQILVTEEEH
EQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQLRADQA
ANAAAANAAAEQDNSGQNQSDRPDQGNQGPPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004806Rad23
IPR015940UBA
IPR006636STI1_HS-bd
IPR015360XPC-bd
IPR036353XPC-bd_sf
IPR009060UBA-like_sf