Gcaud7715.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7715.t1
Unique NameGcaud7715.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length190
Homology
BLAST of Gcaud7715.t1 vs. uniprot
Match: A0A2V3IYR2_9FLOR (SWR1 complex subunit 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYR2_9FLOR)

HSP 1 Score: 268 bits (684), Expect = 4.660e-89
Identity = 137/178 (76.97%), Postives = 157/178 (88.20%), Query Frame = 0
Query:   12 EETSTRGKRKREVANRVKHVDFSVIQEARNRRLQALENDNYAAEQEAILLEGEDEYEPGMESEEEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLAIEEENLSARPSKMVAWAQMIVSPSSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKFTV 189
            EE  +RGKRKREVANR+K VDFS ++EARNRRL+ALENDNYAAEQEA+LLEGE+EY PG+ESE+EMAG+KR++R   XXXXXX  G KD+R +G   GIE+WNKPT LA+EEENLSARP  MV+  QM+VSPSSRPPRYFCSTCGY+APYTCTRCFTRFCSV+CN VHQETRCLKFTV
Sbjct:   11 EEQVSRGKRKREVANRMKRVDFSAVEEARNRRLEALENDNYAAEQEALLLEGEEEYNPGIESEDEMAGRKRNSRPRKXXXXXXXXGQKDSRLDGLKTGIEKWNKPTQLAVEEENLSARPKSMVSLLQMVVSPSSRPPRYFCSTCGYSAPYTCTRCFTRFCSVRCNLVHQETRCLKFTV 188          
BLAST of Gcaud7715.t1 vs. uniprot
Match: R7QEX6_CHOCR (HIT-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEX6_CHOCR)

HSP 1 Score: 151 bits (382), Expect = 3.610e-43
Identity = 96/183 (52.46%), Postives = 117/183 (63.93%), Query Frame = 0
Query:   16 TRGKRKREVANRVKHVDFSVIQEARNRRLQALENDNYAAEQEAILLEGEDEYEPGMESEEEMAG----------KKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLAIEEENLSARPSKMVAWAQMIVSPSSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKFT 188
            TR  RKR+VA+RV+ VD + +  AR RRL ALENDN+AAEQE   L GEDEY+P  +S++ + G          + RS  XXXXXXXX  R  K  R  GK   I+RWNK    A+EEE  ++RP  MVA+ ++    S RP R FCS CG+ A YTCTRC  RFCSV C  +H ETRCLKFT
Sbjct:   10 TRTARKRKVASRVRQVDATALAAARRRRLDALENDNHAAEQETAALAGEDEYDPDADSDDALVGGRASKKRVAKRARSXXXXXXXXXXPARSAKPKR-NGKR-NIQRWNKTLAQALEEETPASRPGGMVAYDEIEARRSQRPSRPFCSVCGFRAAYTCTRCLVRFCSVPCGNLHNETRCLKFT 190          
BLAST of Gcaud7715.t1 vs. uniprot
Match: A0A061R2I5_9CHLO (Zinc finger HIT domain-containing protein 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R2I5_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 3.330e-19
Identity = 63/179 (35.20%), Postives = 89/179 (49.72%), Query Frame = 0
Query:   13 ETSTRGKRKREVANRVKHVDFSVIQEARNRRLQALENDNYAAEQEAILLEGEDEYEPGMESEEEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLAI--EEENLSARPSKMVAWAQMIVSPSSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKFTV 189
            E + +  R R+V+  ++HV     ++A   RL ALE DN AAE+ A  ++ +DE     +S +E A                 R               R  +PT  A+  EE +L A P+ + A A     P+S   R FC  CG+ +PYTC RC +R+CS KC  +HQETRCLKFT+
Sbjct:    3 EAARKSSRARKVSKTMQHVGTEDKKQAAQARLDALERDN-AAEESAFAMDSDDEEFVMEDSSDEEA---------------MSRKXXXXXXXXXXXXXXRREQPTSFAVLLEEADLGAGPNYLTAAAG---PPASFSGRKFCGVCGFTSPYTCPRCGSRYCSRKCMTIHQETRCLKFTM 162          
BLAST of Gcaud7715.t1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.700e-18
Identity = 55/170 (32.35%), Postives = 86/170 (50.59%), Query Frame = 0
Query:   24 VANRVKHVDFSVIQEARNRRLQALENDNYA----AEQEAILLEGEDEYEPGMESEEEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLAIEEENLSARPSKMVAWAQMIVSPSSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKFTV 189
            ++  +KHVD    Q+ RN RL ALE DNY      +++  +L+ ++  +P          K ++ +          RG   +R   K   + +W       +  + LS+ P+ + A     V PS+ PPR+FC  CG  + YTC RC +RFCSV+C + H+ET CLKF +
Sbjct:   37 ISKAMKHVDEETRQQVRNARLDALEADNYVEATEGDEDMFILDDDEPKKP--------KSKAKAKQPKAAPLVPTARGR--HRIVRKVKSLRQWIFEECGDVTNDPLSSTPTYLSA----AVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKFNL 192          
BLAST of Gcaud7715.t1 vs. uniprot
Match: I0Z5U9_COCSC (HIT-type domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z5U9_COCSC)

HSP 1 Score: 86.3 bits (212), Expect = 6.810e-18
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 0
Query:   13 ETSTRGKRKREVANRVKHVDFSVIQEARNRRLQALENDNYAAE-------QEAILLEGEDEYEPGMESE---EEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLAIEEENLSARPSKMVAWAQMIVSPSSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKF 187
            E+  R  R R+V+ R+  V  +  + ARN RL ALE+D+   E       +E ++ + +D+ E G+ ++   ++  G KR TR                  E +  G   +     +A + E   A+ ++++  A  +  P  +  R +CS CG+AAPY C RC +RFC+ KC  VH ETRCLKF
Sbjct:    3 ESGRRSVRSRKVSKRISTVSLAERESARNARLDALEDDDATGEGIVGDSDEEFVIQDSDDDLELGVSAKKRGDKKKGPKRKTRAML---------------EAERRGPITFASLLEMAGDAEGGPAKEAEVMYTAAAVGPPQHKATRKWCSVCGFAAPYKCVRCGSRFCTRKCYAVHIETRCLKF 172          
BLAST of Gcaud7715.t1 vs. uniprot
Match: D7TI06_VITVI (HIT-type domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=D7TI06_VITVI)

HSP 1 Score: 85.1 bits (209), Expect = 1.800e-17
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 0
Query:   43 RLQALENDNYAAEQEAILLEGEDEYEPGMESEEEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLA-IEEENLSARPSKMVAWAQMIVSP-SSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKF 187
            RL+ALENDN   E     ++  D+ +  ++ ++E   +KR ++           G K    + K +   R    T L  + E NL + P  + ++ +  V P SS   R+FC+ CG+AA YTC RC TRFCS +C  +H +TRCLKF
Sbjct:   39 RLEALENDNAGME----TIDVNDDEDASLDDDDEGYAQKRQSK-----------GTKRTTRQAKALENARKAPRTFLELVHEANLESLPPHVPSYLRAAVGPPSSTSRRHFCTVCGFAANYTCVRCGTRFCSTRCQNIHNDTRCLKF 170          
BLAST of Gcaud7715.t1 vs. uniprot
Match: A0A660KVF1_9ROSI (HIT-type domain-containing protein n=4 Tax=Fagales TaxID=3502 RepID=A0A660KVF1_9ROSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.640e-17
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 0
Query:   43 RLQALENDNYAAEQEAILLEGEDEYEPGMESEEEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLAI-EEENLSARPSKMVAWAQMIVSP-SSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKF 187
            RL+ALENDN   E    ++E  DE +  ++ E+++  +KR ++           G K    + K +   R    T L +  E NL   P  + ++ +  V P SS   R+FC+ CGYAA YTC +C  RFCS +C  +H +TRCLKF
Sbjct:   40 RLEALENDNAGME----MVEINDEDDSSLDDEDQVYMQKRQSK-----------GTKRKTRQAKALENARKAPRTFLELLHEANLETLPPHVPSYLKAAVGPPSSTSRRHFCTVCGYAASYTCVKCGMRFCSRRCQNIHNDTRCLKF 171          
BLAST of Gcaud7715.t1 vs. uniprot
Match: A0A6G1DID7_9ORYZ (HIT-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1DID7_9ORYZ)

HSP 1 Score: 83.6 bits (205), Expect = 5.700e-17
Identity = 54/147 (36.73%), Postives = 80/147 (54.42%), Query Frame = 0
Query:   43 RLQALENDNYAAEQEAILLEGEDEYEPGMESEEEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHL-AIEEENLSARPSKMVAWAQMIVSP-SSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKF 187
            RL+ALE+DN  A  E + L  +DEY  G E +  +  KK+S            + +K    +GK   +E+    + +  ++E NL + P  +  + +  V P S+   R++CS CG AA YTC RC TRFCS +C  +H +TRCLKF
Sbjct:   31 RLEALESDN--AGPEVVDLNDDDEYGSGDEEDHVLMQKKQS------------KNMKRKTRQGKA--LEKKAARSFMDVLQEANLESLPPHVPTYTRAAVGPPSTSSRRHYCSVCGNAANYTCVRCGTRFCSCRCQVIHNDTRCLKF 161          
BLAST of Gcaud7715.t1 vs. uniprot
Match: A0A1S3Y847_TOBAC (SWR1 complex subunit 6-like n=15 Tax=Solanaceae TaxID=4070 RepID=A0A1S3Y847_TOBAC)

HSP 1 Score: 83.6 bits (205), Expect = 6.870e-17
Identity = 50/146 (34.25%), Postives = 78/146 (53.42%), Query Frame = 0
Query:   43 RLQALENDNYAAEQEAILLEGEDEYEPGMESEEEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLAIEEENLSARPSKMVAWAQMIVSP-SSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKF 187
            RL ALE+DN   EQ+ +    +D+ E  ++ E+++  KK              +G K    + K +  +R  K     + E NL + P  +  + +  V P SS   R+FC+ CG++A YTC +C  RFCS+KC  +H++TRCLKF
Sbjct:   40 RLDALESDNAVVEQQPL----DDDDEASLDDEDQVFHKK------------YPKGTKRKTRQAKALEHKRAPKTFLELLHEANLESLPPHVPTYLRAAVGPPSSISRRHFCTVCGFSANYTCVQCGMRFCSIKCQTIHKDTRCLKF 169          
BLAST of Gcaud7715.t1 vs. uniprot
Match: A0A0A0KH15_CUCSA (HIT-type domain-containing protein n=7 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KH15_CUCSA)

HSP 1 Score: 83.2 bits (204), Expect = 9.640e-17
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 0
Query:   43 RLQALENDNYAAEQEAILLEGEDEYEPGMESEEEMAGKKRSTRXXXXXXXXXQRGLKDNRAEGKGVGIERWNKPTHLAIEEENLSARPSKMVAWAQMIVSP-SSRPPRYFCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKF 187
            RL+ALENDN   E    ++E  D+ +  ++ +++   K++S            +G K    + K +  ++  K     + E NL + P  + ++ +  V P SS   R+FC+ CG+AA YTC RC  RFCS +C  +H +TRCLKF
Sbjct:   40 RLEALENDNAGVE----VVENIDDEDASLDDDDQAYIKRQS------------KGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 169          
The following BLAST results are available for this feature:
BLAST of Gcaud7715.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYR2_9FLOR4.660e-8976.97SWR1 complex subunit 6 n=1 Tax=Gracilariopsis chor... [more]
R7QEX6_CHOCR3.610e-4352.46HIT-type domain-containing protein n=1 Tax=Chondru... [more]
A0A061R2I5_9CHLO3.330e-1935.20Zinc finger HIT domain-containing protein 1 n=1 Ta... [more]
A0A485KXM9_9STRA3.700e-1832.35Aste57867_13128 protein n=1 Tax=Aphanomyces stella... [more]
I0Z5U9_COCSC6.810e-1831.89HIT-type domain-containing protein n=1 Tax=Coccomy... [more]
D7TI06_VITVI1.800e-1735.37HIT-type domain-containing protein n=2 Tax=Vitis v... [more]
A0A660KVF1_9ROSI3.640e-1736.05HIT-type domain-containing protein n=4 Tax=Fagales... [more]
A0A6G1DID7_9ORYZ5.700e-1736.73HIT-type domain-containing protein n=1 Tax=Oryza m... [more]
A0A1S3Y847_TOBAC6.870e-1734.25SWR1 complex subunit 6-like n=15 Tax=Solanaceae Ta... [more]
A0A0A0KH15_CUCSA9.640e-1733.56HIT-type domain-containing protein n=7 Tax=Cucurbi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..104
NoneNo IPR availablePANTHERPTHR13093:SF0ZINC FINGER HIT DOMAIN-CONTAINING PROTEIN 1coord: 10..189
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 148..182
IPR007529Zinc finger, HIT-typePFAMPF04438zf-HITcoord: 148..176
e-value: 1.8E-7
score: 30.9
IPR007529Zinc finger, HIT-typePROSITEPS51083ZF_HITcoord: 152..184
score: 9.54146
IPR039723Vps71/ZNHIT1PANTHERPTHR13093ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1coord: 10..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_982_length_15525_cov_4.305624contigNODE_982_length_15525_cov_4.305624:8261..8830 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7715.t1Gcaud7715.t1Gracilaria caudata M_176_S67 malemRNANODE_982_length_15525_cov_4.305624 8261..8830 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7715.t1 ID=Gcaud7715.t1|Name=Gcaud7715.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=190bp
MTSLKNSVSKPEETSTRGKRKREVANRVKHVDFSVIQEARNRRLQALEND
NYAAEQEAILLEGEDEYEPGMESEEEMAGKKRSTRTRKRKQRRRQRGLKD
NRAEGKGVGIERWNKPTHLAIEEENLSARPSKMVAWAQMIVSPSSRPPRY
FCSTCGYAAPYTCTRCFTRFCSVKCNEVHQETRCLKFTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007529Znf_HIT
IPR039723Vps71/ZNHIT1