Gcaud3767.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3767.t1
Unique NameGcaud3767.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_94_length_52825_cov_4.981075contigNODE_94_length_52825_cov_4.981075:28339..29022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001742793.1
PFAMsGLTP
Max annot lvl33154|Opisthokonta
KEGG koko:K08051
Evalue1.99e-23
EggNOG OGsKOG3221@1|root,KOG3221@2759|Eukaryota,392MM@33154|Opisthokonta
Descriptionglycolipid transporter activity
COG categoryG
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3767Gcaud3767Gracilaria caudata M_176_S67 malegeneNODE_94_length_52825_cov_4.981075 28339..29022 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3767.t1.start1Gcaud3767.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_94_length_52825_cov_4.981075 28339..28341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3767.t1.CDS1Gcaud3767.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 28339..29022 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3767.t1.exon1Gcaud3767.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 28339..29022 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3767.t1.stop1Gcaud3767.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_94_length_52825_cov_4.981075 29020..29022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3767.t1Gcaud3767.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_94_length_52825_cov_4.981075 28339..29022 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3767.t1 ID=Gcaud3767.t1|Name=Gcaud3767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp
MSSSAAPQRDFEFFLEIVEAFKTCGASAPNGDFKNMNVSKFVEAMTMFLR
IFDAFANPFFSDVVKKDVKGNIEKLRAGAEKTGCTTIESVLDAECADPQL
KKLIVKETGQGSETATIGLLWMKRTMQFVIGLLRYLVQDASISLSSASRK
SYSESLRYCHNFITRGVFDTGLRFAPSRESFYRNLAGGAENISKVDAPMK
EFLEVFDPQLDGIIAMYKAKNLEPYIK*
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spliced messenger RNA

>Gcaud3767.t1 ID=Gcaud3767.t1|Name=Gcaud3767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:28339..29022+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCATCAGCAGCACCCCAACGCGATTTTGAGTTCTTCTTGGAAAT
TGTGGAGGCGTTCAAGACATGTGGTGCAAGCGCCCCCAATGGAGATTTCA
AGAACATGAACGTGAGCAAGTTTGTAGAAGCTATGACTATGTTTCTTCGT
ATTTTTGACGCGTTTGCAAATCCGTTCTTCTCAGATGTTGTGAAGAAGGA
CGTGAAAGGCAACATTGAAAAACTGCGTGCCGGCGCAGAGAAGACCGGTT
GCACAACAATTGAAAGCGTTCTCGACGCAGAATGTGCCGATCCACAGTTG
AAAAAGCTCATCGTGAAAGAGACAGGTCAAGGTTCGGAAACCGCCACAAT
CGGTTTACTATGGATGAAACGTACAATGCAGTTTGTGATTGGTCTCTTGC
GCTACCTAGTACAGGACGCGTCCATTTCTTTGTCAAGTGCAAGTCGCAAA
TCGTACTCAGAAAGTTTGCGATACTGCCACAATTTCATCACGCGCGGTGT
GTTTGATACGGGACTTAGATTTGCCCCATCTCGTGAATCGTTCTATAGGA
ATCTGGCTGGTGGAGCGGAGAACATATCGAAGGTGGACGCGCCCATGAAG
GAATTTCTTGAGGTGTTTGATCCTCAGCTCGATGGGATTATTGCTATGTA
CAAGGCGAAAAACCTTGAACCGTACATAAAGTAA
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protein sequence of Gcaud3767.t1

>Gcaud3767.t1 ID=Gcaud3767.t1|Name=Gcaud3767.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
MSSSAAPQRDFEFFLEIVEAFKTCGASAPNGDFKNMNVSKFVEAMTMFLR
IFDAFANPFFSDVVKKDVKGNIEKLRAGAEKTGCTTIESVLDAECADPQL
KKLIVKETGQGSETATIGLLWMKRTMQFVIGLLRYLVQDASISLSSASRK
SYSESLRYCHNFITRGVFDTGLRFAPSRESFYRNLAGGAENISKVDAPMK
EFLEVFDPQLDGIIAMYKAKNLEPYIK*
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mRNA from alignment at NODE_94_length_52825_cov_4.981075:28339..29022+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3767.t1 ID=Gcaud3767.t1|Name=Gcaud3767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:28339..29022+ (Gracilaria caudata M_176_S67 male)
ATGTCTTCATCAGCAGCACCCCAACGCGATTTTGAGTTCTTCTTGGAAAT
TGTGGAGGCGTTCAAGACATGTGGTGCAAGCGCCCCCAATGGAGATTTCA
AGAACATGAACGTGAGCAAGTTTGTAGAAGCTATGACTATGTTTCTTCGT
ATTTTTGACGCGTTTGCAAATCCGTTCTTCTCAGATGTTGTGAAGAAGGA
CGTGAAAGGCAACATTGAAAAACTGCGTGCCGGCGCAGAGAAGACCGGTT
GCACAACAATTGAAAGCGTTCTCGACGCAGAATGTGCCGATCCACAGTTG
AAAAAGCTCATCGTGAAAGAGACAGGTCAAGGTTCGGAAACCGCCACAAT
CGGTTTACTATGGATGAAACGTACAATGCAGTTTGTGATTGGTCTCTTGC
GCTACCTAGTACAGGACGCGTCCATTTCTTTGTCAAGTGCAAGTCGCAAA
TCGTACTCAGAAAGTTTGCGATACTGCCACAATTTCATCACGCGCGGTGT
GTTTGATACGGGACTTAGATTTGCCCCATCTCGTGAATCGTTCTATAGGA
ATCTGGCTGGTGGAGCGGAGAACATATCGAAGGTGGACGCGCCCATGAAG
GAATTTCTTGAGGTGTTTGATCCTCAGCTCGATGGGATTATTGCTATGTA
CAAGGCGAAAAACCTTGAACCGTACATAAAGTAA
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Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:28339..29022+

>Gcaud3767.t1 ID=Gcaud3767.t1|Name=Gcaud3767.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=684bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:28339..29022+ (Gracilaria caudata M_176_S67 male)
ATGTCTTCATCAGCAGCACCCCAACGCGATTTTGAGTTCTTCTTGGAAAT
TGTGGAGGCGTTCAAGACATGTGGTGCAAGCGCCCCCAATGGAGATTTCA
AGAACATGAACGTGAGCAAGTTTGTAGAAGCTATGACTATGTTTCTTCGT
ATTTTTGACGCGTTTGCAAATCCGTTCTTCTCAGATGTTGTGAAGAAGGA
CGTGAAAGGCAACATTGAAAAACTGCGTGCCGGCGCAGAGAAGACCGGTT
GCACAACAATTGAAAGCGTTCTCGACGCAGAATGTGCCGATCCACAGTTG
AAAAAGCTCATCGTGAAAGAGACAGGTCAAGGTTCGGAAACCGCCACAAT
CGGTTTACTATGGATGAAACGTACAATGCAGTTTGTGATTGGTCTCTTGC
GCTACCTAGTACAGGACGCGTCCATTTCTTTGTCAAGTGCAAGTCGCAAA
TCGTACTCAGAAAGTTTGCGATACTGCCACAATTTCATCACGCGCGGTGT
GTTTGATACGGGACTTAGATTTGCCCCATCTCGTGAATCGTTCTATAGGA
ATCTGGCTGGTGGAGCGGAGAACATATCGAAGGTGGACGCGCCCATGAAG
GAATTTCTTGAGGTGTTTGATCCTCAGCTCGATGGGATTATTGCTATGTA
CAAGGCGAAAAACCTTGAACCGTACATAAAGTAA
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