Gcaud3775.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3775.t1
Unique NameGcaud3775.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_94_length_52825_cov_4.981075contigNODE_94_length_52825_cov_4.981075:45389..46235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704722.1
Preferred nameGORASP1
PFAMsGRASP55_65
Max annot lvl2759|Eukaryota
GOsGO:0000139,GO:0002009,GO:0002165,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005793,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010256,GO:0010604,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016333,GO:0019222,GO:0019538,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0033036,GO:0033116,GO:0034645,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044719,GO:0045184,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:2000026,GO:2000171
Evalue1.15e-47
EggNOG OGsCOG5233@1|root,KOG3834@2759|Eukaryota
DescriptionGolgi organization
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3775Gcaud3775Gracilaria caudata M_176_S67 malegeneNODE_94_length_52825_cov_4.981075 45389..46235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3775.t1Gcaud3775.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_94_length_52825_cov_4.981075 45389..46235 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3775.t1.start1Gcaud3775.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_94_length_52825_cov_4.981075 45389..45391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3775.t1.CDS1Gcaud3775.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 45389..45901 +
Gcaud3775.t1.CDS2Gcaud3775.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 45996..46064 +
Gcaud3775.t1.CDS3Gcaud3775.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 46134..46235 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3775.t1.exon1Gcaud3775.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 45389..45901 +
Gcaud3775.t1.exon2Gcaud3775.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 45996..46064 +
Gcaud3775.t1.exon3Gcaud3775.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 46134..46235 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3775.t1.intron1Gcaud3775.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_94_length_52825_cov_4.981075 45902..45995 +
Gcaud3775.t1.intron2Gcaud3775.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_94_length_52825_cov_4.981075 46065..46133 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3775.t1.stop1Gcaud3775.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_94_length_52825_cov_4.981075 46233..46235 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3775.t1 ID=Gcaud3775.t1|Name=Gcaud3775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp
MGQEYSLEDGDEHAPVNVSPGVYVEEEISFDSLSGYRVMKVFQGSPASRS
GLAPYEDFVVALNGNLVNADNASLANVLRENEGKEVALVVWNCIDGKKRD
VTLRPVKWNGPGLLGAAVRFEALHGSADHVQRVIDVLPNSPADEAGLVPF
TDYIVGTPAEAFRREADFVKIISDAIQRQTAASVMIYSSATNRTRNVEIR
PNENWGGEGSLGCELATGLLHRISRAT*
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spliced messenger RNA

>Gcaud3775.t1 ID=Gcaud3775.t1|Name=Gcaud3775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:45389..46235+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAGGAATACTCTCTAGAAGATGGGGATGAACATGCTCCAGTCAA
TGTAAGCCCGGGGGTGTATGTTGAGGAAGAGATCAGCTTTGATAGCCTTT
CAGGCTACAGGGTAATGAAAGTGTTTCAAGGAAGCCCAGCTTCAAGATCT
GGACTTGCACCTTACGAAGACTTTGTTGTTGCTCTCAACGGGAATTTGGT
GAATGCGGACAACGCATCGCTTGCCAACGTTTTGCGCGAAAACGAAGGGA
AGGAAGTTGCGTTAGTTGTATGGAACTGTATCGATGGAAAGAAGCGGGAC
GTTACTTTAAGACCTGTTAAATGGAACGGCCCGGGACTATTGGGAGCTGC
AGTTCGCTTCGAGGCTTTGCATGGTTCTGCTGATCATGTACAGAGGGTAA
TTGACGTTCTACCCAACAGTCCTGCGGATGAAGCGGGCTTAGTACCTTTC
ACTGATTACATTGTCGGAACTCCTGCTGAAGCGTTCCGCAGGGAAGCTGA
TTTCGTTAAGATTATTTCAGATGCAATACAACGACAAACTGCTGCGAGCG
TCATGATATATTCATCTGCTACGAACAGGACTAGAAACGTCGAGATTAGA
CCAAACGAAAACTGGGGGGGAGAAGGTTCACTTGGATGTGAACTCGCGAC
TGGATTACTCCATCGAATCTCTCGCGCAACATAG
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protein sequence of Gcaud3775.t1

>Gcaud3775.t1 ID=Gcaud3775.t1|Name=Gcaud3775.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
MGQEYSLEDGDEHAPVNVSPGVYVEEEISFDSLSGYRVMKVFQGSPASRS
GLAPYEDFVVALNGNLVNADNASLANVLRENEGKEVALVVWNCIDGKKRD
VTLRPVKWNGPGLLGAAVRFEALHGSADHVQRVIDVLPNSPADEAGLVPF
TDYIVGTPAEAFRREADFVKIISDAIQRQTAASVMIYSSATNRTRNVEIR
PNENWGGEGSLGCELATGLLHRISRAT*
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mRNA from alignment at NODE_94_length_52825_cov_4.981075:45389..46235+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3775.t1 ID=Gcaud3775.t1|Name=Gcaud3775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=847bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:45389..46235+ (Gracilaria caudata M_176_S67 male)
ATGGGACAGGAATACTCTCTAGAAGATGGGGATGAACATGCTCCAGTCAA
TGTAAGCCCGGGGGTGTATGTTGAGGAAGAGATCAGCTTTGATAGCCTTT
CAGGCTACAGGGTAATGAAAGTGTTTCAAGGAAGCCCAGCTTCAAGATCT
GGACTTGCACCTTACGAAGACTTTGTTGTTGCTCTCAACGGGAATTTGGT
GAATGCGGACAACGCATCGCTTGCCAACGTTTTGCGCGAAAACGAAGGGA
AGGAAGTTGCGTTAGTTGTATGGAACTGTATCGATGGAAAGAAGCGGGAC
GTTACTTTAAGACCTGTTAAATGGAACGGCCCGGGACTATTGGGAGCTGC
AGTTCGCTTCGAGGCTTTGCATGGTTCTGCTGATCATGTACAGAGGGTAA
TTGACGTTCTACCCAACAGTCCTGCGGATGAAGCGGGCTTAGTACCTTTC
ACTGATTACATTGTCGGAACTCCTGCTGAAGCGTTCCGCAGGGAAGCTGA
TTTCGTTAAGATTGTATGTATTTGATATTGATTTCTAGAGACTGAAAACA
GTCTGGGTTCAAGTTTTTGTCTTTTACTGACGGTTTTCCCCGATGCTGCA
TGGACAGATTTCAGATGCAATACAACGACAAACTGCTGCGAGCGTCATGA
TATATTCATCTGCTACGAACAGGACTGTAAGTTGAGCTTCAAACCATCTT
CTTGAAGCCGTAGAGGTTACTGACCAGGACTTGTCTTTACTGCAGAGAAA
CGTCGAGATTAGACCAAACGAAAACTGGGGGGGAGAAGGTTCACTTGGAT
GTGAACTCGCGACTGGATTACTCCATCGAATCTCTCGCGCAACATAG
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Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:45389..46235+

>Gcaud3775.t1 ID=Gcaud3775.t1|Name=Gcaud3775.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=684bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:45389..46235+ (Gracilaria caudata M_176_S67 male)
ATGGGACAGGAATACTCTCTAGAAGATGGGGATGAACATGCTCCAGTCAA
TGTAAGCCCGGGGGTGTATGTTGAGGAAGAGATCAGCTTTGATAGCCTTT
CAGGCTACAGGGTAATGAAAGTGTTTCAAGGAAGCCCAGCTTCAAGATCT
GGACTTGCACCTTACGAAGACTTTGTTGTTGCTCTCAACGGGAATTTGGT
GAATGCGGACAACGCATCGCTTGCCAACGTTTTGCGCGAAAACGAAGGGA
AGGAAGTTGCGTTAGTTGTATGGAACTGTATCGATGGAAAGAAGCGGGAC
GTTACTTTAAGACCTGTTAAATGGAACGGCCCGGGACTATTGGGAGCTGC
AGTTCGCTTCGAGGCTTTGCATGGTTCTGCTGATCATGTACAGAGGGTAA
TTGACGTTCTACCCAACAGTCCTGCGGATGAAGCGGGCTTAGTACCTTTC
ACTGATTACATTGTCGGAACTCCTGCTGAAGCGTTCCGCAGGGAAGCTGA
TTTCGTTAAGATTATTTCAGATGCAATACAACGACAAACTGCTGCGAGCG
TCATGATATATTCATCTGCTACGAACAGGACTAGAAACGTCGAGATTAGA
CCAAACGAAAACTGGGGGGGAGAAGGTTCACTTGGATGTGAACTCGCGAC
TGGATTACTCCATCGAATCTCTCGCGCAACATAG
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