Gcaud3838.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3838.t1
Unique Name	Gcaud3838.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1220_length_12432_cov_4.237420	contig	NODE_1220_length_12432_cov_4.237420:10601..12373 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3838	Gcaud3838	Gracilaria caudata M_176_S67 male	gene	NODE_1220_length_12432_cov_4.237420 10601..12373 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3838.t1.stop1	Gcaud3838.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1220_length_12432_cov_4.237420 10601..10603 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3838.t1.CDS1	Gcaud3838.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1220_length_12432_cov_4.237420 10601..12373 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3838.t1.exon1	Gcaud3838.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1220_length_12432_cov_4.237420 10601..12373 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3838.t1.start1	Gcaud3838.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1220_length_12432_cov_4.237420 12371..12373 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3838.t1	Gcaud3838.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1220_length_12432_cov_4.237420 10601..12373 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1220_length_12432_cov_4.237420:10601..12373-
coding sequence from alignment at NODE_1220_length_12432_cov_4.237420:10601..12373-

mRNA sequence

>Gcaud3838.t1 ID=Gcaud3838.t1|Name=Gcaud3838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp
MQHQSAWVATEPEPAPIFASLEAALAPPPLHPHHHFNNTSSPTTTIVTVS
SPTSSPPHHSVRTAEQLWQLQQLLSPSPSPTTRTKPVDALGPSCLIALYF
TTLTRTLLRNRAIPIRARLSFLAPQLHYKFTQLINGKWKNVPTVQLPYSS
LCRAGNWLTARIGLQQPSFKNAKDALQSTLTHAWQTRNWLCVVSLLGEGD
LAMADLLECDAVAGKPLATPAQFLGRLNCHKGAPDIRRDVDGALSARRAL
NEVLEMLGLRAVSVSAGMFRRVVSPAWKQRCPYVSTHSRPNCCSFYEGGY
FKKLMSHSQLYGDSAAFSVQEVLEGLDEVIKLWNNPGGMCVREAKCAAGL
RYNVDKSFQSGVRSYVKARFLREAPSVIDQLRMQEQHTYQSVKNLLRIKR
AKYFRCREQLDVIEVTVEDLVPRFSSTVGPTMPTMPSSDLGFQSFTQQPP
PPPPPPLPPPSAPAEHLHFHGPGTIPLQQMYAGEDAIGMMTPQALSIAAA
KKRKRPEFEEGLCPTTPREQKRKHAHLSLKRKEAAETALRRYLDERRAVC
SRLQDLLDHTQRHGESCNCPDIGDVAAPGEFPTSANTPVA*

spliced messenger RNA

>Gcaud3838.t1 ID=Gcaud3838.t1|Name=Gcaud3838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at NODE_1220_length_12432_cov_4.237420:10601..12373- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCATCAGTCTGCTTGGGTCGCCACAGAGCCTGAGCCTGCCCCGAT
TTTCGCCTCACTGGAAGCTGCCTTAGCTCCTCCCCCTCTGCACCCCCACC
ACCACTTCAATAACACTTCCAGCCCCACCACCACCATCGTCACCGTCTCA
TCCCCGACCTCATCCCCTCCTCATCACTCTGTGCGCACTGCAGAGCAGCT
GTGGCAGCTTCAGCAGCTGCTCAGTCCCAGCCCCTCACCGACTACGCGCA
CCAAGCCAGTTGATGCGCTGGGCCCTTCATGTCTCATTGCTCTGTACTTC
ACAACACTCACCAGAACCCTGTTGAGGAACCGCGCCATCCCAATTCGAGC
ACGCCTCTCCTTCTTGGCACCGCAGCTGCACTACAAGTTCACGCAGCTCA
TCAATGGAAAGTGGAAGAATGTCCCCACAGTCCAATTGCCCTACTCTTCG
CTGTGCCGCGCTGGCAATTGGTTGACAGCTCGTATCGGTCTGCAGCAGCC
GAGCTTTAAGAACGCAAAGGACGCCCTGCAGTCCACTTTGACCCATGCCT
GGCAGACCCGCAATTGGTTGTGTGTGGTAAGTCTGCTGGGTGAAGGAGAT
CTCGCCATGGCCGATTTGCTCGAGTGTGATGCTGTCGCTGGTAAACCGCT
AGCGACGCCTGCTCAGTTCTTGGGCCGTCTCAACTGTCACAAGGGGGCCC
CGGATATTCGTCGCGATGTCGACGGTGCCCTGTCGGCCCGCCGTGCTCTG
AATGAGGTCCTAGAAATGTTGGGACTCAGGGCCGTATCTGTCAGCGCTGG
CATGTTCCGCCGCGTCGTATCTCCAGCTTGGAAGCAGCGTTGTCCTTATG
TATCCACCCATTCCCGCCCAAATTGCTGTTCCTTCTATGAGGGAGGTTAT
TTCAAAAAGCTCATGTCGCATTCTCAATTGTATGGCGACTCGGCAGCCTT
TTCTGTTCAAGAGGTGCTTGAGGGACTGGATGAGGTAATCAAGTTATGGA
ACAACCCAGGTGGAATGTGTGTTCGTGAGGCCAAGTGTGCGGCTGGCCTT
CGTTACAACGTGGACAAGAGTTTCCAATCTGGAGTCAGGAGTTATGTGAA
AGCCAGATTTCTGAGGGAAGCCCCATCTGTCATCGATCAGCTACGTATGC
AGGAGCAGCATACGTATCAGAGCGTCAAGAATCTACTGCGCATCAAACGC
GCCAAATATTTCAGATGTCGAGAGCAATTGGACGTCATCGAGGTTACCGT
GGAGGATCTCGTTCCTCGTTTCAGTTCGACAGTTGGACCTACAATGCCTA
CAATGCCATCGTCAGATTTAGGCTTTCAATCGTTTACACAACAACCGCCG
CCACCACCACCACCACCCCTGCCACCACCATCAGCCCCGGCTGAGCACCT
TCATTTTCATGGACCTGGTACTATTCCACTGCAGCAGATGTACGCGGGGG
AGGATGCCATCGGAATGATGACTCCGCAAGCCCTCAGTATAGCTGCAGCA
AAGAAACGCAAACGCCCTGAATTCGAAGAAGGTCTGTGTCCGACTACGCC
TCGTGAACAGAAGAGGAAACATGCCCACCTGTCATTGAAGCGCAAGGAAG
CAGCCGAGACTGCTCTTAGGCGGTATCTGGATGAGCGACGAGCAGTTTGC
TCTCGATTGCAGGATTTGTTGGACCATACTCAACGGCATGGAGAAAGCTG
CAATTGTCCCGACATAGGCGATGTCGCTGCGCCCGGAGAGTTTCCCACTT
CTGCGAATACACCAGTTGCCTAA

protein sequence of Gcaud3838.t1

>Gcaud3838.t1 ID=Gcaud3838.t1|Name=Gcaud3838.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=591bp
MQHQSAWVATEPEPAPIFASLEAALAPPPLHPHHHFNNTSSPTTTIVTVS
SPTSSPPHHSVRTAEQLWQLQQLLSPSPSPTTRTKPVDALGPSCLIALYF
TTLTRTLLRNRAIPIRARLSFLAPQLHYKFTQLINGKWKNVPTVQLPYSS
LCRAGNWLTARIGLQQPSFKNAKDALQSTLTHAWQTRNWLCVVSLLGEGD
LAMADLLECDAVAGKPLATPAQFLGRLNCHKGAPDIRRDVDGALSARRAL
NEVLEMLGLRAVSVSAGMFRRVVSPAWKQRCPYVSTHSRPNCCSFYEGGY
FKKLMSHSQLYGDSAAFSVQEVLEGLDEVIKLWNNPGGMCVREAKCAAGL
RYNVDKSFQSGVRSYVKARFLREAPSVIDQLRMQEQHTYQSVKNLLRIKR
AKYFRCREQLDVIEVTVEDLVPRFSSTVGPTMPTMPSSDLGFQSFTQQPP
PPPPPPLPPPSAPAEHLHFHGPGTIPLQQMYAGEDAIGMMTPQALSIAAA
KKRKRPEFEEGLCPTTPREQKRKHAHLSLKRKEAAETALRRYLDERRAVC
SRLQDLLDHTQRHGESCNCPDIGDVAAPGEFPTSANTPVA*

mRNA from alignment at NODE_1220_length_12432_cov_4.237420:10601..12373-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3838.t1 ID=Gcaud3838.t1|Name=Gcaud3838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at NODE_1220_length_12432_cov_4.237420:10601..12373- (Gracilaria caudata M_176_S67 male)
ATGCAGCATCAGTCTGCTTGGGTCGCCACAGAGCCTGAGCCTGCCCCGAT
TTTCGCCTCACTGGAAGCTGCCTTAGCTCCTCCCCCTCTGCACCCCCACC
ACCACTTCAATAACACTTCCAGCCCCACCACCACCATCGTCACCGTCTCA
TCCCCGACCTCATCCCCTCCTCATCACTCTGTGCGCACTGCAGAGCAGCT
GTGGCAGCTTCAGCAGCTGCTCAGTCCCAGCCCCTCACCGACTACGCGCA
CCAAGCCAGTTGATGCGCTGGGCCCTTCATGTCTCATTGCTCTGTACTTC
ACAACACTCACCAGAACCCTGTTGAGGAACCGCGCCATCCCAATTCGAGC
ACGCCTCTCCTTCTTGGCACCGCAGCTGCACTACAAGTTCACGCAGCTCA
TCAATGGAAAGTGGAAGAATGTCCCCACAGTCCAATTGCCCTACTCTTCG
CTGTGCCGCGCTGGCAATTGGTTGACAGCTCGTATCGGTCTGCAGCAGCC
GAGCTTTAAGAACGCAAAGGACGCCCTGCAGTCCACTTTGACCCATGCCT
GGCAGACCCGCAATTGGTTGTGTGTGGTAAGTCTGCTGGGTGAAGGAGAT
CTCGCCATGGCCGATTTGCTCGAGTGTGATGCTGTCGCTGGTAAACCGCT
AGCGACGCCTGCTCAGTTCTTGGGCCGTCTCAACTGTCACAAGGGGGCCC
CGGATATTCGTCGCGATGTCGACGGTGCCCTGTCGGCCCGCCGTGCTCTG
AATGAGGTCCTAGAAATGTTGGGACTCAGGGCCGTATCTGTCAGCGCTGG
CATGTTCCGCCGCGTCGTATCTCCAGCTTGGAAGCAGCGTTGTCCTTATG
TATCCACCCATTCCCGCCCAAATTGCTGTTCCTTCTATGAGGGAGGTTAT
TTCAAAAAGCTCATGTCGCATTCTCAATTGTATGGCGACTCGGCAGCCTT
TTCTGTTCAAGAGGTGCTTGAGGGACTGGATGAGGTAATCAAGTTATGGA
ACAACCCAGGTGGAATGTGTGTTCGTGAGGCCAAGTGTGCGGCTGGCCTT
CGTTACAACGTGGACAAGAGTTTCCAATCTGGAGTCAGGAGTTATGTGAA
AGCCAGATTTCTGAGGGAAGCCCCATCTGTCATCGATCAGCTACGTATGC
AGGAGCAGCATACGTATCAGAGCGTCAAGAATCTACTGCGCATCAAACGC
GCCAAATATTTCAGATGTCGAGAGCAATTGGACGTCATCGAGGTTACCGT
GGAGGATCTCGTTCCTCGTTTCAGTTCGACAGTTGGACCTACAATGCCTA
CAATGCCATCGTCAGATTTAGGCTTTCAATCGTTTACACAACAACCGCCG
CCACCACCACCACCACCCCTGCCACCACCATCAGCCCCGGCTGAGCACCT
TCATTTTCATGGACCTGGTACTATTCCACTGCAGCAGATGTACGCGGGGG
AGGATGCCATCGGAATGATGACTCCGCAAGCCCTCAGTATAGCTGCAGCA
AAGAAACGCAAACGCCCTGAATTCGAAGAAGGTCTGTGTCCGACTACGCC
TCGTGAACAGAAGAGGAAACATGCCCACCTGTCATTGAAGCGCAAGGAAG
CAGCCGAGACTGCTCTTAGGCGGTATCTGGATGAGCGACGAGCAGTTTGC
TCTCGATTGCAGGATTTGTTGGACCATACTCAACGGCATGGAGAAAGCTG
CAATTGTCCCGACATAGGCGATGTCGCTGCGCCCGGAGAGTTTCCCACTT
CTGCGAATACACCAGTTGCCTAA

Coding sequence (CDS) from alignment at NODE_1220_length_12432_cov_4.237420:10601..12373-

>Gcaud3838.t1 ID=Gcaud3838.t1|Name=Gcaud3838.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1773bp|location=Sequence derived from alignment at NODE_1220_length_12432_cov_4.237420:10601..12373- (Gracilaria caudata M_176_S67 male)
ATGCAGCATCAGTCTGCTTGGGTCGCCACAGAGCCTGAGCCTGCCCCGAT
TTTCGCCTCACTGGAAGCTGCCTTAGCTCCTCCCCCTCTGCACCCCCACC
ACCACTTCAATAACACTTCCAGCCCCACCACCACCATCGTCACCGTCTCA
TCCCCGACCTCATCCCCTCCTCATCACTCTGTGCGCACTGCAGAGCAGCT
GTGGCAGCTTCAGCAGCTGCTCAGTCCCAGCCCCTCACCGACTACGCGCA
CCAAGCCAGTTGATGCGCTGGGCCCTTCATGTCTCATTGCTCTGTACTTC
ACAACACTCACCAGAACCCTGTTGAGGAACCGCGCCATCCCAATTCGAGC
ACGCCTCTCCTTCTTGGCACCGCAGCTGCACTACAAGTTCACGCAGCTCA
TCAATGGAAAGTGGAAGAATGTCCCCACAGTCCAATTGCCCTACTCTTCG
CTGTGCCGCGCTGGCAATTGGTTGACAGCTCGTATCGGTCTGCAGCAGCC
GAGCTTTAAGAACGCAAAGGACGCCCTGCAGTCCACTTTGACCCATGCCT
GGCAGACCCGCAATTGGTTGTGTGTGGTAAGTCTGCTGGGTGAAGGAGAT
CTCGCCATGGCCGATTTGCTCGAGTGTGATGCTGTCGCTGGTAAACCGCT
AGCGACGCCTGCTCAGTTCTTGGGCCGTCTCAACTGTCACAAGGGGGCCC
CGGATATTCGTCGCGATGTCGACGGTGCCCTGTCGGCCCGCCGTGCTCTG
AATGAGGTCCTAGAAATGTTGGGACTCAGGGCCGTATCTGTCAGCGCTGG
CATGTTCCGCCGCGTCGTATCTCCAGCTTGGAAGCAGCGTTGTCCTTATG
TATCCACCCATTCCCGCCCAAATTGCTGTTCCTTCTATGAGGGAGGTTAT
TTCAAAAAGCTCATGTCGCATTCTCAATTGTATGGCGACTCGGCAGCCTT
TTCTGTTCAAGAGGTGCTTGAGGGACTGGATGAGGTAATCAAGTTATGGA
ACAACCCAGGTGGAATGTGTGTTCGTGAGGCCAAGTGTGCGGCTGGCCTT
CGTTACAACGTGGACAAGAGTTTCCAATCTGGAGTCAGGAGTTATGTGAA
AGCCAGATTTCTGAGGGAAGCCCCATCTGTCATCGATCAGCTACGTATGC
AGGAGCAGCATACGTATCAGAGCGTCAAGAATCTACTGCGCATCAAACGC
GCCAAATATTTCAGATGTCGAGAGCAATTGGACGTCATCGAGGTTACCGT
GGAGGATCTCGTTCCTCGTTTCAGTTCGACAGTTGGACCTACAATGCCTA
CAATGCCATCGTCAGATTTAGGCTTTCAATCGTTTACACAACAACCGCCG
CCACCACCACCACCACCCCTGCCACCACCATCAGCCCCGGCTGAGCACCT
TCATTTTCATGGACCTGGTACTATTCCACTGCAGCAGATGTACGCGGGGG
AGGATGCCATCGGAATGATGACTCCGCAAGCCCTCAGTATAGCTGCAGCA
AAGAAACGCAAACGCCCTGAATTCGAAGAAGGTCTGTGTCCGACTACGCC
TCGTGAACAGAAGAGGAAACATGCCCACCTGTCATTGAAGCGCAAGGAAG
CAGCCGAGACTGCTCTTAGGCGGTATCTGGATGAGCGACGAGCAGTTTGC
TCTCGATTGCAGGATTTGTTGGACCATACTCAACGGCATGGAGAAAGCTG
CAATTGTCCCGACATAGGCGATGTCGCTGCGCCCGGAGAGTTTCCCACTT
CTGCGAATACACCAGTTGCCTAA