Gcaud2920.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2920.t1
Unique NameGcaud2920.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_92_length_53089_cov_4.692668contigNODE_92_length_53089_cov_4.692668:3642..4100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_08956T0
PFAMsUQ_con
Max annot lvl4751|Fungi
KEGG koko:K06688
KEGG Pathwayko04120,map04120
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010948,GO:0010965,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031625,GO:0032270,GO:0032436,GO:0032446,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1903052,GO:1903364,GO:1903504,GO:1905818,GO:1905820,GO:2001252
Evalue1.19e-56
EggNOG OGsCOG5078@1|root,KOG0421@2759|Eukaryota,38MK7@33154|Opisthokonta,3P359@4751|Fungi
EC2.3.2.23
DescriptionBelongs to the ubiquitin-conjugating enzyme family
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2920Gcaud2920Gracilaria caudata M_176_S67 malegeneNODE_92_length_53089_cov_4.692668 3642..4100 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2920.t1.stop1Gcaud2920.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_92_length_53089_cov_4.692668 3642..3644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2920.t1.CDS1Gcaud2920.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 3642..4100 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2920.t1.exon1Gcaud2920.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 3642..4100 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2920.t1.start1Gcaud2920.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_92_length_53089_cov_4.692668 4098..4100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2920.t1Gcaud2920.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_92_length_53089_cov_4.692668 3642..4100 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2920.t1 ID=Gcaud2920.t1|Name=Gcaud2920.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=153bp
MVGTAQVTKRLQSDLMGLMTDPIPGISAFPQADNLQQWKGTINPSESSVY
AGMEFSLNMTFPATYPHTAPTVKFETPIFHPNIDMSGNICLDILKERWSP
TYTVSTLLLSIQGLLDTPNNDSPLNNQAAQLWNDREQFLKLAKRRYANLP
LC*
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spliced messenger RNA

>Gcaud2920.t1 ID=Gcaud2920.t1|Name=Gcaud2920.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:3642..4100- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGGTACTGCCCAAGTTACAAAGCGCCTACAGTCCGACTTGATGGG
GTTAATGACCGATCCCATCCCTGGCATCTCCGCGTTTCCACAAGCTGATA
ACCTTCAACAATGGAAAGGCACCATCAATCCCTCCGAATCAAGTGTTTAC
GCTGGCATGGAGTTCTCGCTAAACATGACATTCCCCGCCACGTACCCACA
TACCGCACCTACCGTGAAGTTTGAGACACCAATCTTTCACCCAAATATCG
ACATGAGTGGAAACATCTGTCTGGATATTCTAAAAGAGAGGTGGAGTCCC
ACCTACACCGTTTCCACCTTGTTGCTTTCTATTCAGGGCTTGTTGGACAC
GCCCAACAACGACTCCCCGTTGAACAATCAGGCCGCACAGCTTTGGAATG
ACCGCGAACAATTCCTCAAGCTCGCCAAGAGGAGATACGCAAACTTGCCG
CTTTGTTGA
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protein sequence of Gcaud2920.t1

>Gcaud2920.t1 ID=Gcaud2920.t1|Name=Gcaud2920.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=153bp
MVGTAQVTKRLQSDLMGLMTDPIPGISAFPQADNLQQWKGTINPSESSVY
AGMEFSLNMTFPATYPHTAPTVKFETPIFHPNIDMSGNICLDILKERWSP
TYTVSTLLLSIQGLLDTPNNDSPLNNQAAQLWNDREQFLKLAKRRYANLP
LC*
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mRNA from alignment at NODE_92_length_53089_cov_4.692668:3642..4100-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2920.t1 ID=Gcaud2920.t1|Name=Gcaud2920.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:3642..4100- (Gracilaria caudata M_176_S67 male)
ATGGTTGGTACTGCCCAAGTTACAAAGCGCCTACAGTCCGACTTGATGGG
GTTAATGACCGATCCCATCCCTGGCATCTCCGCGTTTCCACAAGCTGATA
ACCTTCAACAATGGAAAGGCACCATCAATCCCTCCGAATCAAGTGTTTAC
GCTGGCATGGAGTTCTCGCTAAACATGACATTCCCCGCCACGTACCCACA
TACCGCACCTACCGTGAAGTTTGAGACACCAATCTTTCACCCAAATATCG
ACATGAGTGGAAACATCTGTCTGGATATTCTAAAAGAGAGGTGGAGTCCC
ACCTACACCGTTTCCACCTTGTTGCTTTCTATTCAGGGCTTGTTGGACAC
GCCCAACAACGACTCCCCGTTGAACAATCAGGCCGCACAGCTTTGGAATG
ACCGCGAACAATTCCTCAAGCTCGCCAAGAGGAGATACGCAAACTTGCCG
CTTTGTTGA
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Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:3642..4100-

>Gcaud2920.t1 ID=Gcaud2920.t1|Name=Gcaud2920.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=459bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:3642..4100- (Gracilaria caudata M_176_S67 male)
ATGGTTGGTACTGCCCAAGTTACAAAGCGCCTACAGTCCGACTTGATGGG
GTTAATGACCGATCCCATCCCTGGCATCTCCGCGTTTCCACAAGCTGATA
ACCTTCAACAATGGAAAGGCACCATCAATCCCTCCGAATCAAGTGTTTAC
GCTGGCATGGAGTTCTCGCTAAACATGACATTCCCCGCCACGTACCCACA
TACCGCACCTACCGTGAAGTTTGAGACACCAATCTTTCACCCAAATATCG
ACATGAGTGGAAACATCTGTCTGGATATTCTAAAAGAGAGGTGGAGTCCC
ACCTACACCGTTTCCACCTTGTTGCTTTCTATTCAGGGCTTGTTGGACAC
GCCCAACAACGACTCCCCGTTGAACAATCAGGCCGCACAGCTTTGGAATG
ACCGCGAACAATTCCTCAAGCTCGCCAAGAGGAGATACGCAAACTTGCCG
CTTTGTTGA
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