Gcaud2931.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2931.t1
Unique Name	Gcaud2931.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	581

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_92_length_53089_cov_4.692668	contig	NODE_92_length_53089_cov_4.692668:36296..38038 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708443.1
PFAMs	HMGL-like,LeuA_dimer
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00470,RC02754
KEGG ko	ko:K01649
KEGG Reaction	R01213
KEGG Pathway	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG Module	M00432
Evalue	2.05e-240
EggNOG OGs	COG0119@1\|root,KOG2367@2759\|Eukaryota
EC	2.3.3.13
Description	Belongs to the alpha-IPM synthase homocitrate synthase family
COG category	E
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2931	Gcaud2931	Gracilaria caudata M_176_S67 male	gene	NODE_92_length_53089_cov_4.692668 36296..38038 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2931.t1.stop1	Gcaud2931.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_92_length_53089_cov_4.692668 36296..36298 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2931.t1.CDS1	Gcaud2931.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_92_length_53089_cov_4.692668 36296..38038 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2931.t1.exon1	Gcaud2931.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_92_length_53089_cov_4.692668 36296..38038 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2931.t1.start1	Gcaud2931.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_92_length_53089_cov_4.692668 38036..38038 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2931.t1	Gcaud2931.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_92_length_53089_cov_4.692668 36296..38038 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_92_length_53089_cov_4.692668:36296..38038-
coding sequence from alignment at NODE_92_length_53089_cov_4.692668:36296..38038-

mRNA sequence

>Gcaud2931.t1 ID=Gcaud2931.t1|Name=Gcaud2931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=581bp
MVAPARRRSARVSSATERAASSALIKEQKTVYIYDTTLRDGSQGEGISFT
VPDKIKIAHRLDQFGVHYIEGGWPGSNPKDEAFFAQCKDLRNAKLVAFGS
TRYKGTTCEKDKNVLALLNADTPVVTLVGKAWNTQVTVVLEATLEENLAM
ISETVEFFKLHGKEVMLDAEHFFDGYKADPSYALSCLNAAAQSGVDVLVL
CDTNGGTLPWEIEDITRMVVSEFPSVKIGIHCHNDMELAVSNSIAAVHAG
ASLVQGTVNGFGERTGNANLMSIVPTLQLKMGYNCVGDHLSQLTNVSRYA
DEVANQPHVPSRPYVGSSSFAHKGGLHVAAVLKDANTYQHIDPELVGNER
RILVSELSGRRNIITKAKELGLHPDGDEEDVKDWNARAKSVLQQVKELEN
KGYSFEGAEASLELMLRRTVKGYRPPFELLDFSVSTDNKRVVYGEDQNAT
PRNESVTQASVKLALLGPKDGGDLCPTKVCFEIAEGNGPVDAVNGALQKC
LLPVYKPLRTVSLVDYKVRILDNASGTAAITRVMVEFEDSSNGKRWTTVY
AHPNIIVASVNALMDGFEVAMWDQLPQCIL*

spliced messenger RNA

>Gcaud2931.t1 ID=Gcaud2931.t1|Name=Gcaud2931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1743bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:36296..38038- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGCCTGCCAGACGTAGGTCGGCTCGCGTTTCGTCTGCTACAGA
GCGGGCTGCTTCTTCGGCGCTTATCAAGGAGCAGAAGACAGTGTACATAT
ATGACACAACCTTAAGAGACGGGTCACAGGGTGAGGGAATTTCATTCACT
GTTCCTGATAAGATCAAAATCGCGCATCGCCTTGACCAATTCGGCGTGCA
TTACATCGAGGGAGGGTGGCCGGGCAGCAACCCGAAGGACGAGGCGTTCT
TTGCTCAGTGTAAAGACCTCCGAAATGCCAAATTGGTAGCGTTTGGTAGT
ACGCGCTATAAGGGCACCACCTGCGAGAAGGATAAGAATGTTCTTGCGTT
ACTCAATGCTGATACGCCGGTTGTTACGCTTGTGGGAAAGGCGTGGAACA
CACAGGTTACAGTTGTTCTTGAAGCCACTCTCGAGGAGAATCTCGCCATG
ATTTCAGAAACGGTAGAGTTCTTTAAGCTTCATGGAAAGGAAGTAATGCT
GGATGCTGAGCATTTCTTTGATGGATATAAAGCTGACCCTAGTTATGCCC
TATCGTGTTTGAATGCAGCGGCACAGTCTGGGGTTGATGTGCTCGTTCTG
TGCGATACAAATGGTGGAACTTTGCCGTGGGAGATTGAAGATATTACTCG
AATGGTGGTCTCTGAGTTTCCATCCGTGAAGATTGGTATCCACTGCCATA
ATGATATGGAACTCGCTGTGTCCAATTCGATTGCGGCTGTCCACGCTGGC
GCTTCACTTGTTCAAGGAACAGTAAATGGCTTTGGTGAACGCACAGGCAA
CGCAAACCTGATGAGCATTGTGCCAACTCTCCAACTCAAAATGGGTTACA
ACTGTGTTGGGGATCACTTGTCACAGTTGACCAATGTATCGAGGTATGCA
GATGAAGTGGCAAACCAGCCACACGTTCCCAGTCGGCCGTATGTGGGCTC
ATCCAGTTTTGCACACAAGGGAGGACTTCATGTGGCAGCCGTGCTTAAGG
ACGCTAACACTTACCAGCACATTGACCCGGAGCTCGTTGGGAACGAGCGA
CGTATCCTCGTCTCTGAGTTGTCTGGAAGGCGGAATATCATTACAAAGGC
GAAAGAGCTTGGGTTGCATCCGGATGGAGATGAAGAAGATGTCAAAGATT
GGAATGCGCGTGCAAAATCTGTACTGCAGCAGGTTAAAGAGCTGGAAAAC
AAAGGCTACAGCTTCGAGGGCGCCGAAGCAAGCCTAGAACTGATGTTGAG
ACGCACTGTGAAAGGATATAGACCACCGTTTGAACTGCTTGACTTCTCTG
TCTCAACTGATAATAAGCGCGTCGTATATGGAGAAGACCAGAATGCGACG
CCTAGAAATGAGTCAGTTACACAGGCTTCAGTGAAACTTGCGTTATTGGG
ACCAAAGGATGGTGGCGATCTGTGTCCTACGAAGGTATGTTTTGAGATTG
CGGAAGGAAATGGTCCTGTAGATGCGGTGAACGGCGCGCTTCAGAAATGT
CTTCTCCCTGTGTACAAGCCGTTGAGAACAGTATCTTTAGTCGATTACAA
GGTGCGCATTCTCGATAATGCAAGTGGGACAGCTGCCATAACTCGAGTAA
TGGTGGAGTTTGAAGATTCGTCTAACGGGAAGAGATGGACGACTGTGTAC
GCCCATCCTAATATCATTGTAGCTTCTGTGAACGCTTTGATGGATGGATT
TGAGGTGGCCATGTGGGATCAATTGCCTCAGTGCATCTTGTAG

protein sequence of Gcaud2931.t1

>Gcaud2931.t1 ID=Gcaud2931.t1|Name=Gcaud2931.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=581bp
MVAPARRRSARVSSATERAASSALIKEQKTVYIYDTTLRDGSQGEGISFT
VPDKIKIAHRLDQFGVHYIEGGWPGSNPKDEAFFAQCKDLRNAKLVAFGS
TRYKGTTCEKDKNVLALLNADTPVVTLVGKAWNTQVTVVLEATLEENLAM
ISETVEFFKLHGKEVMLDAEHFFDGYKADPSYALSCLNAAAQSGVDVLVL
CDTNGGTLPWEIEDITRMVVSEFPSVKIGIHCHNDMELAVSNSIAAVHAG
ASLVQGTVNGFGERTGNANLMSIVPTLQLKMGYNCVGDHLSQLTNVSRYA
DEVANQPHVPSRPYVGSSSFAHKGGLHVAAVLKDANTYQHIDPELVGNER
RILVSELSGRRNIITKAKELGLHPDGDEEDVKDWNARAKSVLQQVKELEN
KGYSFEGAEASLELMLRRTVKGYRPPFELLDFSVSTDNKRVVYGEDQNAT
PRNESVTQASVKLALLGPKDGGDLCPTKVCFEIAEGNGPVDAVNGALQKC
LLPVYKPLRTVSLVDYKVRILDNASGTAAITRVMVEFEDSSNGKRWTTVY
AHPNIIVASVNALMDGFEVAMWDQLPQCIL*

mRNA from alignment at NODE_92_length_53089_cov_4.692668:36296..38038-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2931.t1 ID=Gcaud2931.t1|Name=Gcaud2931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1743bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:36296..38038- (Gracilaria caudata M_176_S67 male)
ATGGTTGCGCCTGCCAGACGTAGGTCGGCTCGCGTTTCGTCTGCTACAGA
GCGGGCTGCTTCTTCGGCGCTTATCAAGGAGCAGAAGACAGTGTACATAT
ATGACACAACCTTAAGAGACGGGTCACAGGGTGAGGGAATTTCATTCACT
GTTCCTGATAAGATCAAAATCGCGCATCGCCTTGACCAATTCGGCGTGCA
TTACATCGAGGGAGGGTGGCCGGGCAGCAACCCGAAGGACGAGGCGTTCT
TTGCTCAGTGTAAAGACCTCCGAAATGCCAAATTGGTAGCGTTTGGTAGT
ACGCGCTATAAGGGCACCACCTGCGAGAAGGATAAGAATGTTCTTGCGTT
ACTCAATGCTGATACGCCGGTTGTTACGCTTGTGGGAAAGGCGTGGAACA
CACAGGTTACAGTTGTTCTTGAAGCCACTCTCGAGGAGAATCTCGCCATG
ATTTCAGAAACGGTAGAGTTCTTTAAGCTTCATGGAAAGGAAGTAATGCT
GGATGCTGAGCATTTCTTTGATGGATATAAAGCTGACCCTAGTTATGCCC
TATCGTGTTTGAATGCAGCGGCACAGTCTGGGGTTGATGTGCTCGTTCTG
TGCGATACAAATGGTGGAACTTTGCCGTGGGAGATTGAAGATATTACTCG
AATGGTGGTCTCTGAGTTTCCATCCGTGAAGATTGGTATCCACTGCCATA
ATGATATGGAACTCGCTGTGTCCAATTCGATTGCGGCTGTCCACGCTGGC
GCTTCACTTGTTCAAGGAACAGTAAATGGCTTTGGTGAACGCACAGGCAA
CGCAAACCTGATGAGCATTGTGCCAACTCTCCAACTCAAAATGGGTTACA
ACTGTGTTGGGGATCACTTGTCACAGTTGACCAATGTATCGAGGTATGCA
GATGAAGTGGCAAACCAGCCACACGTTCCCAGTCGGCCGTATGTGGGCTC
ATCCAGTTTTGCACACAAGGGAGGACTTCATGTGGCAGCCGTGCTTAAGG
ACGCTAACACTTACCAGCACATTGACCCGGAGCTCGTTGGGAACGAGCGA
CGTATCCTCGTCTCTGAGTTGTCTGGAAGGCGGAATATCATTACAAAGGC
GAAAGAGCTTGGGTTGCATCCGGATGGAGATGAAGAAGATGTCAAAGATT
GGAATGCGCGTGCAAAATCTGTACTGCAGCAGGTTAAAGAGCTGGAAAAC
AAAGGCTACAGCTTCGAGGGCGCCGAAGCAAGCCTAGAACTGATGTTGAG
ACGCACTGTGAAAGGATATAGACCACCGTTTGAACTGCTTGACTTCTCTG
TCTCAACTGATAATAAGCGCGTCGTATATGGAGAAGACCAGAATGCGACG
CCTAGAAATGAGTCAGTTACACAGGCTTCAGTGAAACTTGCGTTATTGGG
ACCAAAGGATGGTGGCGATCTGTGTCCTACGAAGGTATGTTTTGAGATTG
CGGAAGGAAATGGTCCTGTAGATGCGGTGAACGGCGCGCTTCAGAAATGT
CTTCTCCCTGTGTACAAGCCGTTGAGAACAGTATCTTTAGTCGATTACAA
GGTGCGCATTCTCGATAATGCAAGTGGGACAGCTGCCATAACTCGAGTAA
TGGTGGAGTTTGAAGATTCGTCTAACGGGAAGAGATGGACGACTGTGTAC
GCCCATCCTAATATCATTGTAGCTTCTGTGAACGCTTTGATGGATGGATT
TGAGGTGGCCATGTGGGATCAATTGCCTCAGTGCATCTTGTAG

Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:36296..38038-

>Gcaud2931.t1 ID=Gcaud2931.t1|Name=Gcaud2931.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1743bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:36296..38038- (Gracilaria caudata M_176_S67 male)
ATGGTTGCGCCTGCCAGACGTAGGTCGGCTCGCGTTTCGTCTGCTACAGA
GCGGGCTGCTTCTTCGGCGCTTATCAAGGAGCAGAAGACAGTGTACATAT
ATGACACAACCTTAAGAGACGGGTCACAGGGTGAGGGAATTTCATTCACT
GTTCCTGATAAGATCAAAATCGCGCATCGCCTTGACCAATTCGGCGTGCA
TTACATCGAGGGAGGGTGGCCGGGCAGCAACCCGAAGGACGAGGCGTTCT
TTGCTCAGTGTAAAGACCTCCGAAATGCCAAATTGGTAGCGTTTGGTAGT
ACGCGCTATAAGGGCACCACCTGCGAGAAGGATAAGAATGTTCTTGCGTT
ACTCAATGCTGATACGCCGGTTGTTACGCTTGTGGGAAAGGCGTGGAACA
CACAGGTTACAGTTGTTCTTGAAGCCACTCTCGAGGAGAATCTCGCCATG
ATTTCAGAAACGGTAGAGTTCTTTAAGCTTCATGGAAAGGAAGTAATGCT
GGATGCTGAGCATTTCTTTGATGGATATAAAGCTGACCCTAGTTATGCCC
TATCGTGTTTGAATGCAGCGGCACAGTCTGGGGTTGATGTGCTCGTTCTG
TGCGATACAAATGGTGGAACTTTGCCGTGGGAGATTGAAGATATTACTCG
AATGGTGGTCTCTGAGTTTCCATCCGTGAAGATTGGTATCCACTGCCATA
ATGATATGGAACTCGCTGTGTCCAATTCGATTGCGGCTGTCCACGCTGGC
GCTTCACTTGTTCAAGGAACAGTAAATGGCTTTGGTGAACGCACAGGCAA
CGCAAACCTGATGAGCATTGTGCCAACTCTCCAACTCAAAATGGGTTACA
ACTGTGTTGGGGATCACTTGTCACAGTTGACCAATGTATCGAGGTATGCA
GATGAAGTGGCAAACCAGCCACACGTTCCCAGTCGGCCGTATGTGGGCTC
ATCCAGTTTTGCACACAAGGGAGGACTTCATGTGGCAGCCGTGCTTAAGG
ACGCTAACACTTACCAGCACATTGACCCGGAGCTCGTTGGGAACGAGCGA
CGTATCCTCGTCTCTGAGTTGTCTGGAAGGCGGAATATCATTACAAAGGC
GAAAGAGCTTGGGTTGCATCCGGATGGAGATGAAGAAGATGTCAAAGATT
GGAATGCGCGTGCAAAATCTGTACTGCAGCAGGTTAAAGAGCTGGAAAAC
AAAGGCTACAGCTTCGAGGGCGCCGAAGCAAGCCTAGAACTGATGTTGAG
ACGCACTGTGAAAGGATATAGACCACCGTTTGAACTGCTTGACTTCTCTG
TCTCAACTGATAATAAGCGCGTCGTATATGGAGAAGACCAGAATGCGACG
CCTAGAAATGAGTCAGTTACACAGGCTTCAGTGAAACTTGCGTTATTGGG
ACCAAAGGATGGTGGCGATCTGTGTCCTACGAAGGTATGTTTTGAGATTG
CGGAAGGAAATGGTCCTGTAGATGCGGTGAACGGCGCGCTTCAGAAATGT
CTTCTCCCTGTGTACAAGCCGTTGAGAACAGTATCTTTAGTCGATTACAA
GGTGCGCATTCTCGATAATGCAAGTGGGACAGCTGCCATAACTCGAGTAA
TGGTGGAGTTTGAAGATTCGTCTAACGGGAAGAGATGGACGACTGTGTAC
GCCCATCCTAATATCATTGTAGCTTCTGTGAACGCTTTGATGGATGGATT
TGAGGTGGCCATGTGGGATCAATTGCCTCAGTGCATCTTGTAG