Gcaud1588.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1588.t1
Unique Name	Gcaud1588.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	475

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_916_length_16160_cov_3.715041	contig	NODE_916_length_16160_cov_3.715041:13824..15248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	48698.ENSPFOP00000016027
Preferred name	KLHL7
PFAMs	BACK,BTB,Kelch_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10445
GOs	GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016567,GO:0019538,GO:0031461,GO:0031463,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048471,GO:0070013,GO:0070647,GO:0071704,GO:0071944,GO:1901564,GO:1902494,GO:1990234
Evalue	1.15e-26
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota,39PKU@33154\|Opisthokonta,3BCH9@33208\|Metazoa,3CZDA@33213\|Bilateria,481J1@7711\|Chordata,49038@7742\|Vertebrata,49ZEE@7898\|Actinopterygii
Description	Kelch-like family member 7
COG category	T
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1588	Gcaud1588	Gracilaria caudata M_176_S67 male	gene	NODE_916_length_16160_cov_3.715041 13824..15248 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1588.t1.start1	Gcaud1588.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_916_length_16160_cov_3.715041 13824..13826 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1588.t1.CDS1	Gcaud1588.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_916_length_16160_cov_3.715041 13824..15248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1588.t1.exon1	Gcaud1588.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_916_length_16160_cov_3.715041 13824..15248 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1588.t1.stop1	Gcaud1588.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_916_length_16160_cov_3.715041 15246..15248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1588.t1	Gcaud1588.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_916_length_16160_cov_3.715041 13824..15248 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_916_length_16160_cov_3.715041:13824..15248+
coding sequence from alignment at NODE_916_length_16160_cov_3.715041:13824..15248+

mRNA sequence

>Gcaud1588.t1 ID=Gcaud1588.t1|Name=Gcaud1588.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MDNQRVPSTTVTLPLARRSCSPRLQQPIKRRRDANSAHISMAGECTIGGH
LDAPAHLRCVLANMLQDPQLHSLCDVVLIVQDERFPAHRAVLAAVSTVFK
AMFTNSMKERSSPEIELRSLDKRAWRMAMQYIYHAQLDIHDEATALLLLA
TARMYQLERLECFVENFLVSRVCMQNCFSLLHQAQQYELNALQAACYRAM
EDNFEAISMSPAFVQCPFSLLKRVISSGALMVKSEIFVFEAILRWVNGEE
KQRSEHLEELLQQLRLDKLSDSQLAQIGRSAIVFKSESFRQQIFDRLTRQ
RSDEQVEQALQSACHLKPRRRDAKVFSFCHLQRAITRMPAADEEEIVRTP
WALDEQSGILWRLKIYPRGYGKAKELFLSMYVQARSANQHRLDVTAKFDI
FLINRKDTTQTISFSSSHHFTEVSDHWGFHRFLQLSQMRNTSLGYLEEES
DSLLLGATLYMPGSAKDKSCCTST*

spliced messenger RNA

>Gcaud1588.t1 ID=Gcaud1588.t1|Name=Gcaud1588.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:13824..15248+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAATCAAAGGGTGCCGTCTACCACCGTAACGCTCCCACTCGCTCG
TCGCTCGTGTTCGCCGCGTCTTCAACAGCCTATCAAGCGTCGTCGCGACG
CCAACAGCGCCCACATCTCCATGGCCGGTGAATGTACCATCGGCGGACAT
CTGGACGCGCCCGCGCATCTACGTTGTGTGCTTGCCAACATGCTACAGGA
CCCGCAGCTACACTCTCTTTGTGACGTGGTGCTCATTGTACAGGATGAAC
GCTTCCCGGCGCACCGCGCAGTACTGGCGGCTGTGTCCACTGTGTTCAAG
GCCATGTTCACCAACTCTATGAAGGAGCGAAGCTCACCGGAGATTGAGCT
GCGTTCTCTGGATAAGCGAGCGTGGCGTATGGCCATGCAGTATATTTATC
ATGCGCAGTTGGATATTCATGACGAGGCTACTGCGTTGTTATTGTTGGCC
ACTGCTAGAATGTATCAACTGGAACGGTTGGAATGCTTTGTGGAGAACTT
TTTGGTGTCGCGCGTGTGCATGCAAAACTGCTTCTCATTGTTGCACCAGG
CGCAACAGTATGAGCTGAATGCGTTGCAGGCGGCTTGTTACCGCGCTATG
GAGGACAATTTTGAGGCCATTTCGATGTCGCCCGCGTTTGTACAGTGCCC
GTTTTCGTTGTTGAAGCGCGTTATCTCGAGCGGCGCGCTCATGGTGAAGA
GTGAGATTTTTGTGTTTGAAGCGATTTTGAGATGGGTGAACGGTGAGGAG
AAACAACGGAGTGAACATTTGGAGGAACTGCTTCAACAGCTTCGACTGGA
CAAACTGTCCGATTCGCAACTGGCGCAGATTGGACGCTCGGCGATTGTGT
TCAAGTCGGAGTCGTTTCGACAACAGATATTCGATAGACTTACCAGACAA
CGTAGCGATGAGCAGGTGGAACAGGCTCTTCAAAGCGCGTGTCATCTCAA
ACCTCGTCGACGTGATGCTAAGGTGTTTTCGTTCTGTCACTTGCAGCGCG
CCATCACAAGAATGCCGGCAGCAGACGAAGAAGAGATTGTACGGACTCCC
TGGGCACTCGACGAACAAAGTGGCATCTTGTGGCGTCTAAAGATCTATCC
GAGAGGCTATGGAAAGGCGAAGGAGCTTTTCTTGTCCATGTACGTGCAGG
CTCGAAGCGCCAATCAACATCGTCTGGATGTGACGGCCAAATTCGACATC
TTTCTGATCAATCGGAAGGATACTACGCAAACGATTTCATTCTCGTCTTC
ACACCATTTCACGGAGGTGAGTGACCATTGGGGGTTCCATCGGTTCTTGC
AGTTGTCGCAGATGAGAAATACGTCACTGGGTTATCTGGAGGAGGAGAGC
GATTCGTTGTTGCTGGGCGCCACGCTTTACATGCCTGGTTCAGCGAAGGA
CAAGTCGTGTTGTACTTCCACATGA

protein sequence of Gcaud1588.t1

>Gcaud1588.t1 ID=Gcaud1588.t1|Name=Gcaud1588.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MDNQRVPSTTVTLPLARRSCSPRLQQPIKRRRDANSAHISMAGECTIGGH
LDAPAHLRCVLANMLQDPQLHSLCDVVLIVQDERFPAHRAVLAAVSTVFK
AMFTNSMKERSSPEIELRSLDKRAWRMAMQYIYHAQLDIHDEATALLLLA
TARMYQLERLECFVENFLVSRVCMQNCFSLLHQAQQYELNALQAACYRAM
EDNFEAISMSPAFVQCPFSLLKRVISSGALMVKSEIFVFEAILRWVNGEE
KQRSEHLEELLQQLRLDKLSDSQLAQIGRSAIVFKSESFRQQIFDRLTRQ
RSDEQVEQALQSACHLKPRRRDAKVFSFCHLQRAITRMPAADEEEIVRTP
WALDEQSGILWRLKIYPRGYGKAKELFLSMYVQARSANQHRLDVTAKFDI
FLINRKDTTQTISFSSSHHFTEVSDHWGFHRFLQLSQMRNTSLGYLEEES
DSLLLGATLYMPGSAKDKSCCTST*

mRNA from alignment at NODE_916_length_16160_cov_3.715041:13824..15248+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1588.t1 ID=Gcaud1588.t1|Name=Gcaud1588.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:13824..15248+ (Gracilaria caudata M_176_S67 male)
ATGGACAATCAAAGGGTGCCGTCTACCACCGTAACGCTCCCACTCGCTCG
TCGCTCGTGTTCGCCGCGTCTTCAACAGCCTATCAAGCGTCGTCGCGACG
CCAACAGCGCCCACATCTCCATGGCCGGTGAATGTACCATCGGCGGACAT
CTGGACGCGCCCGCGCATCTACGTTGTGTGCTTGCCAACATGCTACAGGA
CCCGCAGCTACACTCTCTTTGTGACGTGGTGCTCATTGTACAGGATGAAC
GCTTCCCGGCGCACCGCGCAGTACTGGCGGCTGTGTCCACTGTGTTCAAG
GCCATGTTCACCAACTCTATGAAGGAGCGAAGCTCACCGGAGATTGAGCT
GCGTTCTCTGGATAAGCGAGCGTGGCGTATGGCCATGCAGTATATTTATC
ATGCGCAGTTGGATATTCATGACGAGGCTACTGCGTTGTTATTGTTGGCC
ACTGCTAGAATGTATCAACTGGAACGGTTGGAATGCTTTGTGGAGAACTT
TTTGGTGTCGCGCGTGTGCATGCAAAACTGCTTCTCATTGTTGCACCAGG
CGCAACAGTATGAGCTGAATGCGTTGCAGGCGGCTTGTTACCGCGCTATG
GAGGACAATTTTGAGGCCATTTCGATGTCGCCCGCGTTTGTACAGTGCCC
GTTTTCGTTGTTGAAGCGCGTTATCTCGAGCGGCGCGCTCATGGTGAAGA
GTGAGATTTTTGTGTTTGAAGCGATTTTGAGATGGGTGAACGGTGAGGAG
AAACAACGGAGTGAACATTTGGAGGAACTGCTTCAACAGCTTCGACTGGA
CAAACTGTCCGATTCGCAACTGGCGCAGATTGGACGCTCGGCGATTGTGT
TCAAGTCGGAGTCGTTTCGACAACAGATATTCGATAGACTTACCAGACAA
CGTAGCGATGAGCAGGTGGAACAGGCTCTTCAAAGCGCGTGTCATCTCAA
ACCTCGTCGACGTGATGCTAAGGTGTTTTCGTTCTGTCACTTGCAGCGCG
CCATCACAAGAATGCCGGCAGCAGACGAAGAAGAGATTGTACGGACTCCC
TGGGCACTCGACGAACAAAGTGGCATCTTGTGGCGTCTAAAGATCTATCC
GAGAGGCTATGGAAAGGCGAAGGAGCTTTTCTTGTCCATGTACGTGCAGG
CTCGAAGCGCCAATCAACATCGTCTGGATGTGACGGCCAAATTCGACATC
TTTCTGATCAATCGGAAGGATACTACGCAAACGATTTCATTCTCGTCTTC
ACACCATTTCACGGAGGTGAGTGACCATTGGGGGTTCCATCGGTTCTTGC
AGTTGTCGCAGATGAGAAATACGTCACTGGGTTATCTGGAGGAGGAGAGC
GATTCGTTGTTGCTGGGCGCCACGCTTTACATGCCTGGTTCAGCGAAGGA
CAAGTCGTGTTGTACTTCCACATGA

Coding sequence (CDS) from alignment at NODE_916_length_16160_cov_3.715041:13824..15248+

>Gcaud1588.t1 ID=Gcaud1588.t1|Name=Gcaud1588.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:13824..15248+ (Gracilaria caudata M_176_S67 male)
ATGGACAATCAAAGGGTGCCGTCTACCACCGTAACGCTCCCACTCGCTCG
TCGCTCGTGTTCGCCGCGTCTTCAACAGCCTATCAAGCGTCGTCGCGACG
CCAACAGCGCCCACATCTCCATGGCCGGTGAATGTACCATCGGCGGACAT
CTGGACGCGCCCGCGCATCTACGTTGTGTGCTTGCCAACATGCTACAGGA
CCCGCAGCTACACTCTCTTTGTGACGTGGTGCTCATTGTACAGGATGAAC
GCTTCCCGGCGCACCGCGCAGTACTGGCGGCTGTGTCCACTGTGTTCAAG
GCCATGTTCACCAACTCTATGAAGGAGCGAAGCTCACCGGAGATTGAGCT
GCGTTCTCTGGATAAGCGAGCGTGGCGTATGGCCATGCAGTATATTTATC
ATGCGCAGTTGGATATTCATGACGAGGCTACTGCGTTGTTATTGTTGGCC
ACTGCTAGAATGTATCAACTGGAACGGTTGGAATGCTTTGTGGAGAACTT
TTTGGTGTCGCGCGTGTGCATGCAAAACTGCTTCTCATTGTTGCACCAGG
CGCAACAGTATGAGCTGAATGCGTTGCAGGCGGCTTGTTACCGCGCTATG
GAGGACAATTTTGAGGCCATTTCGATGTCGCCCGCGTTTGTACAGTGCCC
GTTTTCGTTGTTGAAGCGCGTTATCTCGAGCGGCGCGCTCATGGTGAAGA
GTGAGATTTTTGTGTTTGAAGCGATTTTGAGATGGGTGAACGGTGAGGAG
AAACAACGGAGTGAACATTTGGAGGAACTGCTTCAACAGCTTCGACTGGA
CAAACTGTCCGATTCGCAACTGGCGCAGATTGGACGCTCGGCGATTGTGT
TCAAGTCGGAGTCGTTTCGACAACAGATATTCGATAGACTTACCAGACAA
CGTAGCGATGAGCAGGTGGAACAGGCTCTTCAAAGCGCGTGTCATCTCAA
ACCTCGTCGACGTGATGCTAAGGTGTTTTCGTTCTGTCACTTGCAGCGCG
CCATCACAAGAATGCCGGCAGCAGACGAAGAAGAGATTGTACGGACTCCC
TGGGCACTCGACGAACAAAGTGGCATCTTGTGGCGTCTAAAGATCTATCC
GAGAGGCTATGGAAAGGCGAAGGAGCTTTTCTTGTCCATGTACGTGCAGG
CTCGAAGCGCCAATCAACATCGTCTGGATGTGACGGCCAAATTCGACATC
TTTCTGATCAATCGGAAGGATACTACGCAAACGATTTCATTCTCGTCTTC
ACACCATTTCACGGAGGTGAGTGACCATTGGGGGTTCCATCGGTTCTTGC
AGTTGTCGCAGATGAGAAATACGTCACTGGGTTATCTGGAGGAGGAGAGC
GATTCGTTGTTGCTGGGCGCCACGCTTTACATGCCTGGTTCAGCGAAGGA
CAAGTCGTGTTGTACTTCCACATGA