Gcaud7578.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7578.t1
Unique NameGcaud7578.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length156
Homology
BLAST of Gcaud7578.t1 vs. uniprot
Match: A0A2V3J095_9FLOR (Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J095_9FLOR)

HSP 1 Score: 164 bits (414), Expect = 1.260e-44
Identity = 86/158 (54.43%), Postives = 107/158 (67.72%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLK--KPTGQDFKNQLLRYFDACLKEPERQDVLDAIDKYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQEFVEETREASVAVCQFSSLGSIQQKWLEEEFHETLFASKRVMRSKRPKHDVDQEIQFVYP 156
            MI QDWD KTQGAY+RDFP  E  S        +DF++QL +YF   L    + +VL +I +YDFSSAGVALVTS+PG + G     YG LRL+ +LQ+ V+   E SVAVCQFSSLGSIQ+ WLEE+FH+ LFA+KR   +K+ KH  D  IQ V P
Sbjct:  256 MIPQDWDSKTQGAYIRDFPMKEQQSSTPFNNENEDFESQLYQYFSRSLNGSIKVEVLASIQRYDFSSAGVALVTSVPGTYHGTQTNGYGCLRLKMLLQKHVDFVNEDSVAVCQFSSLGSIQKVWLEEDFHDVLFANKRFPSTKKKKHSED--IQLVLP 411          
BLAST of Gcaud7578.t1 vs. uniprot
Match: R7Q7T1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7T1_CHOCR)

HSP 1 Score: 152 bits (383), Expect = 4.040e-40
Identity = 85/166 (51.20%), Postives = 108/166 (65.06%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKME--------HHSLKKPTGQD-FKNQLLRYFDACLKEPERQDVLDAIDKYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQ-EFVEETREASVAVCQFSSLGSIQQKWLEEEFHETLFASKRVMRSKRPKHDVDQEIQFVYP 156
            M+ +DW YK QGAYVRDFP +         H +++ PT +D FK QL RYF   L    +++V  +I KYDFSSAGVAL+ S+PGVH+G  +  +G+ RLR +L+ E        SVAVCQFSSLGSIQQKWLEEEF ETLF S+    S +P +    EI+ VYP
Sbjct:  281 MVPRDWYYKVQGAYVRDFPLINQGTDLSDSHVNMQSPTDEDDFKTQLDRYFRHALVGDAKEEVTRSIAKYDFSSAGVALIASVPGVHKGPAKMHFGHARLRELLKSEAFTPEDSGSVAVCQFSSLGSIQQKWLEEEFKETLF-SEAAGPSSQPANAHSTEIKLVYP 445          
BLAST of Gcaud7578.t1 vs. uniprot
Match: L8H8X9_ACACA (TyrosylDNA phosphodiesterase-related, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8X9_ACACA)

HSP 1 Score: 100 bits (250), Expect = 7.380e-22
Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPERQDVLDAIDKYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQEFV---EETREASVAVCQFSSLGSIQQKWLEEEFHETLFASKRVMRSKRPKHDVDQEIQFVYP 156
            +IQ+D++ KTQG +++DFPK            DF++ L+ YF     E + Q    ++  YD+S+  VALVTS+PG H       YG++RLR +L       E  R +SVA CQFSS+GS+  KW+EEEF ++L AS     SK+     + +++ V+P
Sbjct:  310 LIQKDYERKTQGIWLQDFPKKRG---------DFEDTLVDYFGHMGNERQLQFQPSSLRHYDYSAVRVALVTSVPGYHSRATLNRYGHMRLRGLLSRVTMPAEIERRSSVA-CQFSSVGSLTAKWVEEEFGQSLMASAGSSDSKK-----EAQVELVWP 453          
BLAST of Gcaud7578.t1 vs. uniprot
Match: A0A4D8YM05_SALSN (Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8YM05_SALSN)

HSP 1 Score: 95.5 bits (236), Expect = 5.800e-20
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPERQDVLDAID----------KYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQEFVEETR-EASVAVCQFSSLGSIQQKWLEE 125
            +I  DW+ KTQG +++DFP  + +S  K  G  F+N L+ Y  A LK PE    L              K+D+SSA V L+ S+PG H G H   +G+++LR+VLQE   E + E S  + QFSSLGS+ +KW+ E
Sbjct:  261 LIYVDWNNKTQGLWMQDFPWKDQNSTSKGCG--FENDLVEYLSA-LKWPEFNANLPTAGNFSINPSFFRKFDYSSAAVRLIASVPGYHSGPHLSKWGHMKLRTVLQECTFENQFEKSNLIYQFSSLGSLDEKWMTE 393          
BLAST of Gcaud7578.t1 vs. uniprot
Match: A0A4D9AN32_SALSN (Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9AN32_SALSN)

HSP 1 Score: 95.5 bits (236), Expect = 5.990e-20
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPERQDVLDAID----------KYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQEFVEETR-EASVAVCQFSSLGSIQQKWLEE 125
            +I  DW+ KTQG +++DFP  + +S  K  G  F+N L+ Y  A LK PE    L              K+D+SSA V L+ S+PG H G H   +G+++LR+VLQE   E + E S  + QFSSLGS+ +KW+ E
Sbjct:  316 LIYVDWNNKTQGLWMQDFPWKDQNSTSKGCG--FENDLVEYLSA-LKWPEFNANLPTAGNFSINPSFFRKFDYSSAAVRLIASVPGYHSGPHLSKWGHMKLRTVLQECTFENQFEKSNLIYQFSSLGSLDEKWMTE 448          
BLAST of Gcaud7578.t1 vs. uniprot
Match: UPI001C27E6C6 (tyrosyl-DNA phosphodiesterase 1-like isoform X1 n=4 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27E6C6)

HSP 1 Score: 94.0 bits (232), Expect = 1.530e-19
Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPERQDVLDAID----------KYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQEFVEETR-EASVAVCQFSSLGSIQQKWLEE 125
            +I  DW+ KTQG +++DFP  + ++  K  G  F+N L+ Y    LK PE    L              K+D+SSA V L+ S+PG H G H   +G+++LR+VLQE + E + E S  + QFSSLGS+ +KW+ E
Sbjct:  111 LIYVDWNNKTQGLWMQDFPWKDQNTTSKGCG--FENDLVEYLST-LKWPEFNANLPTAGSFSINPSFFRKFDYSSAAVRLIASVPGYHSGPHLSKWGHMKLRTVLQECIFENQFEKSNLIYQFSSLGSLDEKWMTE 243          
BLAST of Gcaud7578.t1 vs. uniprot
Match: A0A2Z6MCU3_TRISU (FHA_2 domain-containing protein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2Z6MCU3_TRISU)

HSP 1 Score: 94.0 bits (232), Expect = 1.750e-19
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPERQDVLDAID----------KYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQE--FVEETREASVAVCQFSSLGSIQQKWLEE 125
            +I  DW+ K+QG +++DFP  + HSL K +G  F+N L+ Y  A LK PE    L ++           K+D+S A V L+ S+PG H G     +G+++LRSVLQE  F EE +++ + V QFSSLGS+ +KW+ E
Sbjct:  293 LIYVDWNNKSQGLWMQDFPWKDQHSLSKGSG--FENDLVEYLSA-LKWPEFSVNLPSLGNFSICPSFFKKFDYSDAMVRLIASVPGYHSGNGLKKWGHMKLRSVLQECTFDEEFKKSPL-VYQFSSLGSLDEKWMVE 425          
BLAST of Gcaud7578.t1 vs. uniprot
Match: A0A2G9GE69_9LAMI (Phosphodiesterase I n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GE69_9LAMI)

HSP 1 Score: 91.3 bits (225), Expect = 8.130e-19
Identity = 54/136 (39.71%), Postives = 78/136 (57.35%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPERQDVLDAID----------KYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQEFVEETR-EASVAVCQFSSLGSIQQKWLEE 125
            +I  DW+ KTQG +++DFP  + +S     G +F+N L+ Y    LK PE    L  I           K+D+SSA V L+ S+PG H G     +G+++LR+VLQE   E + E S  + QFSSLGS+ +KW+ E
Sbjct:   18 LIYVDWNNKTQGLWMQDFPWKDQNSASN--GSEFENDLVDYLST-LKWPEFNVNLPDIGNFCINPRFFKKFDYSSAAVRLIASVPGYHSGSSLSKWGHMKLRTVLQECTFEKQFEKSPLIYQFSSLGSLDEKWMSE 150          
BLAST of Gcaud7578.t1 vs. uniprot
Match: A0A834ZNP9_9MAGN (FHA_2 domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZNP9_9MAGN)

HSP 1 Score: 92.0 bits (227), Expect = 9.730e-19
Identity = 54/136 (39.71%), Postives = 84/136 (61.76%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPE---RQDVLDAID-------KYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQEFV-EETREASVAVCQFSSLGSIQQKWLEE 125
            +I  DW+ K+QG +++DFP  + + + K  G  F+N L+ Y  A LK PE      +L  ++       K+D+SSA V LV S+PG H+G +   +G+++LR+VLQE+V E+  + S    QFSSLGS+ +KW+ E
Sbjct:  326 LIHVDWNNKSQGLWMQDFPWKDQNDMNKRCG--FENDLIDYL-AILKWPEFSVNVPILGNVNINSSFFKKFDYSSASVRLVASVPGYHKGPNLNKWGHMKLRTVLQEYVFEKEFKKSPLAYQFSSLGSLDEKWMAE 458          
BLAST of Gcaud7578.t1 vs. uniprot
Match: A0A200QL22_9MAGN (Tyrosyl-DNA phosphodiesterase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QL22_9MAGN)

HSP 1 Score: 91.3 bits (225), Expect = 1.800e-18
Identity = 56/137 (40.88%), Postives = 81/137 (59.12%), Query Frame = 0
Query:    1 MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPERQDVLDAID----------KYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQE--FVEETREASVAVCQFSSLGSIQQKWLEE 125
            +I  DW+ K+QG +++DFP  +   L K  G  F+N L+ Y  A LK PE    L  I           K+D+SSA V L+ S+PG H G     +G+++LRSVLQE  F +E +++ + V QFSSLGS+ +KW+ E
Sbjct:  325 LIHVDWNNKSQGLWMQDFPWKDQKDLNKGCG--FENDLVDYLSA-LKWPELSVTLPVIGNVKINSSFFKKFDYSSAAVRLIASVPGYHTGPKLKKWGHMKLRSVLQECSFDKEFQKSPI-VYQFSSLGSLNEKWMAE 457          
The following BLAST results are available for this feature:
BLAST of Gcaud7578.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J095_9FLOR1.260e-4454.43Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Gracilario... [more]
R7Q7T1_CHOCR4.040e-4051.20Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
L8H8X9_ACACA7.380e-2238.36TyrosylDNA phosphodiesterase-related, putative n=1... [more]
A0A4D8YM05_SALSN5.800e-2041.18Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Salvia spl... [more]
A0A4D9AN32_SALSN5.990e-2041.18Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Salvia spl... [more]
UPI001C27E6C61.530e-1939.71tyrosyl-DNA phosphodiesterase 1-like isoform X1 n=... [more]
A0A2Z6MCU3_TRISU1.750e-1941.61FHA_2 domain-containing protein n=2 Tax=Trifolium ... [more]
A0A2G9GE69_9LAMI8.130e-1939.71Phosphodiesterase I n=1 Tax=Handroanthus impetigin... [more]
A0A834ZNP9_9MAGN9.730e-1939.71FHA_2 domain-containing protein n=1 Tax=Tetracentr... [more]
A0A200QL22_9MAGN1.800e-1840.88Tyrosyl-DNA phosphodiesterase n=1 Tax=Macleaya cor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.870.10Endonuclease Chain Acoord: 68..156
e-value: 9.4E-15
score: 56.7
NoneNo IPR availableGENE3D3.30.870.10Endonuclease Chain Acoord: 1..66
e-value: 4.3E-13
score: 51.1
NoneNo IPR availablePANTHERPTHR12415:SF0TYROSYL-DNA PHOSPHODIESTERASE 1coord: 1..156
NoneNo IPR availableSUPERFAMILY56024Phospholipase D/nucleasecoord: 1..92
NoneNo IPR availableSUPERFAMILY56024Phospholipase D/nucleasecoord: 68..156
IPR010347Tyrosyl-DNA phosphodiesterase IPFAMPF06087Tyr-DNA_phosphocoord: 1..156
e-value: 2.9E-27
score: 95.6
IPR010347Tyrosyl-DNA phosphodiesterase IPANTHERPTHR12415TYROSYL-DNA PHOSPHODIESTERASE 1coord: 1..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_9157_length_654_cov_9.312611contigNODE_9157_length_654_cov_9.312611:2..468 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7578.t1Gcaud7578.t1Gracilaria caudata M_176_S67 malemRNANODE_9157_length_654_cov_9.312611 2..468 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7578.t1 ID=Gcaud7578.t1|Name=Gcaud7578.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=156bp
MIQQDWDYKTQGAYVRDFPKMEHHSLKKPTGQDFKNQLLRYFDACLKEPE
RQDVLDAIDKYDFSSAGVALVTSIPGVHEGEHRFWYGNLRLRSVLQEFVE
ETREASVAVCQFSSLGSIQQKWLEEEFHETLFASKRVMRSKRPKHDVDQE
IQFVYP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010347Tdp1