Gcaud8531.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8531.t1
Unique Name	Gcaud8531.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_907_length_16250_cov_3.969800	contig	NODE_907_length_16250_cov_3.969800:5461..6348 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G764
Preferred name	TAB2
PFAMs	DUF1092
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009639,GO:0009640,GO:0009657,GO:0009658,GO:0009704,GO:0009791,GO:0009987,GO:0010467,GO:0015979,GO:0016043,GO:0019538,GO:0019684,GO:0022607,GO:0032501,GO:0032502,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048564,GO:0048856,GO:0050896,GO:0065003,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue	2.47e-78
EggNOG OGs	2CDXI@1\|root,2QVJR@2759\|Eukaryota
Description	photosystem I assembly
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8531	Gcaud8531	Gracilaria caudata M_176_S67 male	gene	NODE_907_length_16250_cov_3.969800 5461..6348 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8531.t1.stop1	Gcaud8531.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_907_length_16250_cov_3.969800 5461..5463 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8531.t1.CDS1	Gcaud8531.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_907_length_16250_cov_3.969800 5461..6348 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8531.t1.exon1	Gcaud8531.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_907_length_16250_cov_3.969800 5461..6348 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8531.t1.start1	Gcaud8531.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_907_length_16250_cov_3.969800 6346..6348 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8531.t1	Gcaud8531.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_907_length_16250_cov_3.969800 5461..6348 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_907_length_16250_cov_3.969800:5461..6348-
coding sequence from alignment at NODE_907_length_16250_cov_3.969800:5461..6348-

mRNA sequence

>Gcaud8531.t1 ID=Gcaud8531.t1|Name=Gcaud8531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=296bp
MVCRSQLPVPLAPRTSDIWELDFYSRPVVGLDGKKLWELIITDSQATFEH
VEAIPNSLVNSRELRKRVQAVIDAARTKPTTIRFFRSQMFNMINIALSQM
DVQVAPSRRTYALYQLLKYRQQNVYKNMPGFKQSLLSTTSIFTSLDMNVA
QPLPDALRCDSFAFGDLPLGQLKQFFADADADDYFGDACLVDGELRDDVP
VPGMIIFSKRAKALSAWISGTELAFIRVAFEKQQILLECGLSTVYKFAQI
SADLKQDVRNFQQAKEHTNGTHFLAVQTDQQADEVEGMWLLSELL*

spliced messenger RNA

>Gcaud8531.t1 ID=Gcaud8531.t1|Name=Gcaud8531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:5461..6348- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTGTCGCAGTCAGCTGCCGGTGCCGCTGGCGCCGCGCACGTCCGA
CATCTGGGAGCTCGATTTTTACTCGCGCCCAGTGGTGGGGTTGGACGGCA
AGAAGCTGTGGGAGCTCATCATCACCGACTCGCAGGCCACCTTCGAGCAC
GTGGAGGCCATTCCCAACTCGCTCGTGAATTCGCGCGAGTTGCGCAAGCG
CGTGCAGGCGGTGATCGACGCTGCGCGCACAAAGCCCACCACCATTCGCT
TCTTCCGCTCGCAGATGTTCAACATGATCAACATCGCGCTGTCGCAGATG
GACGTGCAGGTGGCGCCGTCGCGAAGAACGTACGCGCTGTACCAGCTGCT
CAAGTACCGTCAGCAGAACGTGTACAAGAACATGCCCGGCTTCAAGCAGT
CGCTGCTGAGCACCACCTCCATTTTCACGTCGCTGGACATGAACGTGGCG
CAGCCGTTGCCGGACGCGCTGCGCTGCGACAGTTTTGCGTTCGGCGACTT
GCCGCTGGGGCAGCTCAAGCAGTTCTTCGCCGACGCTGACGCCGATGATT
ACTTTGGCGACGCGTGTCTGGTGGACGGCGAGCTGCGGGACGACGTGCCG
GTGCCCGGCATGATCATCTTCTCCAAGCGCGCCAAGGCGCTGTCAGCATG
GATCAGTGGCACCGAGTTGGCGTTTATAAGAGTTGCATTCGAAAAGCAAC
AAATCCTGTTGGAGTGTGGTCTAAGTACGGTGTACAAGTTCGCACAAATC
AGCGCAGACCTCAAACAAGACGTACGCAACTTCCAGCAAGCTAAAGAGCA
CACCAACGGAACGCACTTCCTCGCCGTGCAGACCGACCAGCAGGCCGACG
AGGTGGAAGGAATGTGGCTCCTCTCCGAGCTACTATGA

protein sequence of Gcaud8531.t1

>Gcaud8531.t1 ID=Gcaud8531.t1|Name=Gcaud8531.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=296bp
MVCRSQLPVPLAPRTSDIWELDFYSRPVVGLDGKKLWELIITDSQATFEH
VEAIPNSLVNSRELRKRVQAVIDAARTKPTTIRFFRSQMFNMINIALSQM
DVQVAPSRRTYALYQLLKYRQQNVYKNMPGFKQSLLSTTSIFTSLDMNVA
QPLPDALRCDSFAFGDLPLGQLKQFFADADADDYFGDACLVDGELRDDVP
VPGMIIFSKRAKALSAWISGTELAFIRVAFEKQQILLECGLSTVYKFAQI
SADLKQDVRNFQQAKEHTNGTHFLAVQTDQQADEVEGMWLLSELL*

mRNA from alignment at NODE_907_length_16250_cov_3.969800:5461..6348-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8531.t1 ID=Gcaud8531.t1|Name=Gcaud8531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:5461..6348- (Gracilaria caudata M_176_S67 male)
ATGGTGTGTCGCAGTCAGCTGCCGGTGCCGCTGGCGCCGCGCACGTCCGA
CATCTGGGAGCTCGATTTTTACTCGCGCCCAGTGGTGGGGTTGGACGGCA
AGAAGCTGTGGGAGCTCATCATCACCGACTCGCAGGCCACCTTCGAGCAC
GTGGAGGCCATTCCCAACTCGCTCGTGAATTCGCGCGAGTTGCGCAAGCG
CGTGCAGGCGGTGATCGACGCTGCGCGCACAAAGCCCACCACCATTCGCT
TCTTCCGCTCGCAGATGTTCAACATGATCAACATCGCGCTGTCGCAGATG
GACGTGCAGGTGGCGCCGTCGCGAAGAACGTACGCGCTGTACCAGCTGCT
CAAGTACCGTCAGCAGAACGTGTACAAGAACATGCCCGGCTTCAAGCAGT
CGCTGCTGAGCACCACCTCCATTTTCACGTCGCTGGACATGAACGTGGCG
CAGCCGTTGCCGGACGCGCTGCGCTGCGACAGTTTTGCGTTCGGCGACTT
GCCGCTGGGGCAGCTCAAGCAGTTCTTCGCCGACGCTGACGCCGATGATT
ACTTTGGCGACGCGTGTCTGGTGGACGGCGAGCTGCGGGACGACGTGCCG
GTGCCCGGCATGATCATCTTCTCCAAGCGCGCCAAGGCGCTGTCAGCATG
GATCAGTGGCACCGAGTTGGCGTTTATAAGAGTTGCATTCGAAAAGCAAC
AAATCCTGTTGGAGTGTGGTCTAAGTACGGTGTACAAGTTCGCACAAATC
AGCGCAGACCTCAAACAAGACGTACGCAACTTCCAGCAAGCTAAAGAGCA
CACCAACGGAACGCACTTCCTCGCCGTGCAGACCGACCAGCAGGCCGACG
AGGTGGAAGGAATGTGGCTCCTCTCCGAGCTACTATGA

Coding sequence (CDS) from alignment at NODE_907_length_16250_cov_3.969800:5461..6348-

>Gcaud8531.t1 ID=Gcaud8531.t1|Name=Gcaud8531.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=888bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:5461..6348- (Gracilaria caudata M_176_S67 male)
ATGGTGTGTCGCAGTCAGCTGCCGGTGCCGCTGGCGCCGCGCACGTCCGA
CATCTGGGAGCTCGATTTTTACTCGCGCCCAGTGGTGGGGTTGGACGGCA
AGAAGCTGTGGGAGCTCATCATCACCGACTCGCAGGCCACCTTCGAGCAC
GTGGAGGCCATTCCCAACTCGCTCGTGAATTCGCGCGAGTTGCGCAAGCG
CGTGCAGGCGGTGATCGACGCTGCGCGCACAAAGCCCACCACCATTCGCT
TCTTCCGCTCGCAGATGTTCAACATGATCAACATCGCGCTGTCGCAGATG
GACGTGCAGGTGGCGCCGTCGCGAAGAACGTACGCGCTGTACCAGCTGCT
CAAGTACCGTCAGCAGAACGTGTACAAGAACATGCCCGGCTTCAAGCAGT
CGCTGCTGAGCACCACCTCCATTTTCACGTCGCTGGACATGAACGTGGCG
CAGCCGTTGCCGGACGCGCTGCGCTGCGACAGTTTTGCGTTCGGCGACTT
GCCGCTGGGGCAGCTCAAGCAGTTCTTCGCCGACGCTGACGCCGATGATT
ACTTTGGCGACGCGTGTCTGGTGGACGGCGAGCTGCGGGACGACGTGCCG
GTGCCCGGCATGATCATCTTCTCCAAGCGCGCCAAGGCGCTGTCAGCATG
GATCAGTGGCACCGAGTTGGCGTTTATAAGAGTTGCATTCGAAAAGCAAC
AAATCCTGTTGGAGTGTGGTCTAAGTACGGTGTACAAGTTCGCACAAATC
AGCGCAGACCTCAAACAAGACGTACGCAACTTCCAGCAAGCTAAAGAGCA
CACCAACGGAACGCACTTCCTCGCCGTGCAGACCGACCAGCAGGCCGACG
AGGTGGAAGGAATGTGGCTCCTCTCCGAGCTACTATGA