Gcaud8530.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8530.t1
Unique NameGcaud8530.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length415
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_907_length_16250_cov_3.969800contigNODE_907_length_16250_cov_3.969800:4072..5413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ08907
Preferred nameGSTL1
PFAMsGST_C_2,GST_N_3
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
GOsGO:0003674,GO:0003824,GO:0004364,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010731,GO:0016740,GO:0016765,GO:0019538,GO:0034641,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0050896,GO:0051186,GO:0071704,GO:1901564
Evalue1.34e-62
EggNOG OGsKOG0406@1|root,KOG0406@2759|Eukaryota,37HSB@33090|Viridiplantae,3G7QW@35493|Streptophyta
EC2.5.1.18
Descriptionglutathione s-transferase
COG categoryO
BRITEko00000,ko00001,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8530Gcaud8530Gracilaria caudata M_176_S67 malegeneNODE_907_length_16250_cov_3.969800 4072..5413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8530.t1Gcaud8530.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_907_length_16250_cov_3.969800 4072..5413 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8530.t1.start1Gcaud8530.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_907_length_16250_cov_3.969800 4072..4074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8530.t1.CDS1Gcaud8530.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_907_length_16250_cov_3.969800 4072..4714 +
Gcaud8530.t1.CDS2Gcaud8530.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_907_length_16250_cov_3.969800 4812..5413 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8530.t1.exon1Gcaud8530.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_907_length_16250_cov_3.969800 4072..4714 +
Gcaud8530.t1.exon2Gcaud8530.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_907_length_16250_cov_3.969800 4812..5413 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8530.t1.intron1Gcaud8530.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_907_length_16250_cov_3.969800 4715..4811 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8530.t1.stop1Gcaud8530.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_907_length_16250_cov_3.969800 5411..5413 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8530.t1 ID=Gcaud8530.t1|Name=Gcaud8530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=415bp
MADTLASPLAVPSWHALSQLTIPQDYVNGPNFMTPTRELQSLRLFGQKEA
DVRLVLYRDHAAWCPYCHKVQLLIEAKRIPYLIKKINMSCYGSKPQEFLK
KVPSGLLPVIELDGKVITESMDIMFLLEDNFQTPYKKMIPTDDNDMMQSF
HRYLRLERVFIGAWLSSLRGSMAMLPRGMEAVHQTLDIIDKSLGEYAGPF
FYPGEEPSFVDINFSTVFERARASLKYWRSVDISEGRPNLAKWFYHWDKW
QPALLTRSDDWTHIGALPPQIGPVKFTPNRLAMSYSVETARTKYVMNDGP
EGKMMRNIAAATMCRHASLVVKDAIRGGKVGEKDHAYVDVAFRIMANALF
EPDLLEVLEDTVREQVPRDSWKHVGDAIRFERARCCSPRDMPLLAMQQFC
GVINWLLRTLAQEL*
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spliced messenger RNA

>Gcaud8530.t1 ID=Gcaud8530.t1|Name=Gcaud8530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:4072..5413+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATACGCTTGCCTCGCCGCTGGCGGTGCCGTCGTGGCACGCGCT
GTCGCAGCTCACCATTCCGCAGGACTATGTGAACGGCCCCAACTTCATGA
CGCCCACCAGGGAGCTGCAGTCGCTCAGGCTGTTTGGCCAGAAGGAGGCC
GACGTGCGCCTCGTCCTGTACAGGGATCACGCCGCGTGGTGTCCGTACTG
CCACAAGGTGCAGCTGCTCATCGAGGCCAAGCGAATCCCCTACCTCATCA
AGAAGATCAACATGAGCTGTTACGGATCAAAACCGCAGGAGTTCCTCAAG
AAGGTGCCGTCCGGTCTGCTGCCCGTCATTGAATTGGACGGCAAGGTCAT
CACCGAGTCCATGGACATCATGTTTCTGCTGGAGGACAACTTCCAGACGC
CGTACAAGAAGATGATTCCCACCGATGACAACGATATGATGCAATCGTTT
CACAGGTACCTGCGACTCGAGCGCGTGTTTATCGGCGCTTGGCTGTCGTC
CTTGCGTGGCAGCATGGCAATGCTCCCTCGCGGAATGGAAGCCGTGCACC
AGACGCTCGACATCATTGACAAGTCTCTCGGTGAGTACGCCGGGCCCTTC
TTCTACCCCGGCGAGGAGCCGTCGTTTGTAGACATCAATTTCTCCACGGT
GTTTGAAAGAGCGCGTGCCTCTCTCAAGTACTGGAGAAGTGTGGACATCT
CGGAGGGAAGACCAAACCTGGCCAAATGGTTCTACCACTGGGACAAATGG
CAGCCGGCACTTCTCACGCGCAGCGATGATTGGACGCACATCGGAGCACT
TCCCCCGCAGATCGGGCCCGTGAAGTTCACGCCAAACCGGCTGGCAATGT
CGTACTCGGTGGAAACAGCTCGCACCAAGTACGTGATGAACGACGGACCG
GAAGGGAAGATGATGCGCAACATTGCGGCCGCAACCATGTGCAGACACGC
GTCGCTGGTGGTCAAGGACGCCATTCGCGGCGGCAAAGTGGGCGAGAAGG
ACCACGCGTACGTGGATGTGGCGTTCAGAATCATGGCCAACGCGCTGTTC
GAGCCCGACCTGCTGGAGGTGCTGGAGGACACGGTGCGCGAGCAGGTGCC
GCGCGACAGCTGGAAGCACGTCGGCGACGCCATTCGCTTCGAGCGCGCGC
GGTGCTGCTCGCCGAGGGACATGCCTCTTCTGGCAATGCAACAGTTTTGC
GGGGTGATCAACTGGCTGCTTCGCACGCTTGCTCAGGAGCTGTGA
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protein sequence of Gcaud8530.t1

>Gcaud8530.t1 ID=Gcaud8530.t1|Name=Gcaud8530.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=415bp
MADTLASPLAVPSWHALSQLTIPQDYVNGPNFMTPTRELQSLRLFGQKEA
DVRLVLYRDHAAWCPYCHKVQLLIEAKRIPYLIKKINMSCYGSKPQEFLK
KVPSGLLPVIELDGKVITESMDIMFLLEDNFQTPYKKMIPTDDNDMMQSF
HRYLRLERVFIGAWLSSLRGSMAMLPRGMEAVHQTLDIIDKSLGEYAGPF
FYPGEEPSFVDINFSTVFERARASLKYWRSVDISEGRPNLAKWFYHWDKW
QPALLTRSDDWTHIGALPPQIGPVKFTPNRLAMSYSVETARTKYVMNDGP
EGKMMRNIAAATMCRHASLVVKDAIRGGKVGEKDHAYVDVAFRIMANALF
EPDLLEVLEDTVREQVPRDSWKHVGDAIRFERARCCSPRDMPLLAMQQFC
GVINWLLRTLAQEL*
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mRNA from alignment at NODE_907_length_16250_cov_3.969800:4072..5413+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8530.t1 ID=Gcaud8530.t1|Name=Gcaud8530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1342bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:4072..5413+ (Gracilaria caudata M_176_S67 male)
ATGGCCGATACGCTTGCCTCGCCGCTGGCGGTGCCGTCGTGGCACGCGCT
GTCGCAGCTCACCATTCCGCAGGACTATGTGAACGGCCCCAACTTCATGA
CGCCCACCAGGGAGCTGCAGTCGCTCAGGCTGTTTGGCCAGAAGGAGGCC
GACGTGCGCCTCGTCCTGTACAGGGATCACGCCGCGTGGTGTCCGTACTG
CCACAAGGTGCAGCTGCTCATCGAGGCCAAGCGAATCCCCTACCTCATCA
AGAAGATCAACATGAGCTGTTACGGATCAAAACCGCAGGAGTTCCTCAAG
AAGGTGCCGTCCGGTCTGCTGCCCGTCATTGAATTGGACGGCAAGGTCAT
CACCGAGTCCATGGACATCATGTTTCTGCTGGAGGACAACTTCCAGACGC
CGTACAAGAAGATGATTCCCACCGATGACAACGATATGATGCAATCGTTT
CACAGGTACCTGCGACTCGAGCGCGTGTTTATCGGCGCTTGGCTGTCGTC
CTTGCGTGGCAGCATGGCAATGCTCCCTCGCGGAATGGAAGCCGTGCACC
AGACGCTCGACATCATTGACAAGTCTCTCGGTGAGTACGCCGGGCCCTTC
TTCTACCCCGGCGAGGAGCCGTCGTTTGTAGACATCAATTTCTGTACGTT
GTGCTGTTGATTGTTCCTGCCTGCTCGCTAGCGCAAACATTTTTGGGCGT
TCTGTATTCTAACCTTGTTTGTGAACGTTACTAAACGCAGCCACGGTGTT
TGAAAGAGCGCGTGCCTCTCTCAAGTACTGGAGAAGTGTGGACATCTCGG
AGGGAAGACCAAACCTGGCCAAATGGTTCTACCACTGGGACAAATGGCAG
CCGGCACTTCTCACGCGCAGCGATGATTGGACGCACATCGGAGCACTTCC
CCCGCAGATCGGGCCCGTGAAGTTCACGCCAAACCGGCTGGCAATGTCGT
ACTCGGTGGAAACAGCTCGCACCAAGTACGTGATGAACGACGGACCGGAA
GGGAAGATGATGCGCAACATTGCGGCCGCAACCATGTGCAGACACGCGTC
GCTGGTGGTCAAGGACGCCATTCGCGGCGGCAAAGTGGGCGAGAAGGACC
ACGCGTACGTGGATGTGGCGTTCAGAATCATGGCCAACGCGCTGTTCGAG
CCCGACCTGCTGGAGGTGCTGGAGGACACGGTGCGCGAGCAGGTGCCGCG
CGACAGCTGGAAGCACGTCGGCGACGCCATTCGCTTCGAGCGCGCGCGGT
GCTGCTCGCCGAGGGACATGCCTCTTCTGGCAATGCAACAGTTTTGCGGG
GTGATCAACTGGCTGCTTCGCACGCTTGCTCAGGAGCTGTGA
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Coding sequence (CDS) from alignment at NODE_907_length_16250_cov_3.969800:4072..5413+

>Gcaud8530.t1 ID=Gcaud8530.t1|Name=Gcaud8530.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1245bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:4072..5413+ (Gracilaria caudata M_176_S67 male)
ATGGCCGATACGCTTGCCTCGCCGCTGGCGGTGCCGTCGTGGCACGCGCT
GTCGCAGCTCACCATTCCGCAGGACTATGTGAACGGCCCCAACTTCATGA
CGCCCACCAGGGAGCTGCAGTCGCTCAGGCTGTTTGGCCAGAAGGAGGCC
GACGTGCGCCTCGTCCTGTACAGGGATCACGCCGCGTGGTGTCCGTACTG
CCACAAGGTGCAGCTGCTCATCGAGGCCAAGCGAATCCCCTACCTCATCA
AGAAGATCAACATGAGCTGTTACGGATCAAAACCGCAGGAGTTCCTCAAG
AAGGTGCCGTCCGGTCTGCTGCCCGTCATTGAATTGGACGGCAAGGTCAT
CACCGAGTCCATGGACATCATGTTTCTGCTGGAGGACAACTTCCAGACGC
CGTACAAGAAGATGATTCCCACCGATGACAACGATATGATGCAATCGTTT
CACAGGTACCTGCGACTCGAGCGCGTGTTTATCGGCGCTTGGCTGTCGTC
CTTGCGTGGCAGCATGGCAATGCTCCCTCGCGGAATGGAAGCCGTGCACC
AGACGCTCGACATCATTGACAAGTCTCTCGGTGAGTACGCCGGGCCCTTC
TTCTACCCCGGCGAGGAGCCGTCGTTTGTAGACATCAATTTCTCCACGGT
GTTTGAAAGAGCGCGTGCCTCTCTCAAGTACTGGAGAAGTGTGGACATCT
CGGAGGGAAGACCAAACCTGGCCAAATGGTTCTACCACTGGGACAAATGG
CAGCCGGCACTTCTCACGCGCAGCGATGATTGGACGCACATCGGAGCACT
TCCCCCGCAGATCGGGCCCGTGAAGTTCACGCCAAACCGGCTGGCAATGT
CGTACTCGGTGGAAACAGCTCGCACCAAGTACGTGATGAACGACGGACCG
GAAGGGAAGATGATGCGCAACATTGCGGCCGCAACCATGTGCAGACACGC
GTCGCTGGTGGTCAAGGACGCCATTCGCGGCGGCAAAGTGGGCGAGAAGG
ACCACGCGTACGTGGATGTGGCGTTCAGAATCATGGCCAACGCGCTGTTC
GAGCCCGACCTGCTGGAGGTGCTGGAGGACACGGTGCGCGAGCAGGTGCC
GCGCGACAGCTGGAAGCACGTCGGCGACGCCATTCGCTTCGAGCGCGCGC
GGTGCTGCTCGCCGAGGGACATGCCTCTTCTGGCAATGCAACAGTTTTGC
GGGGTGATCAACTGGCTGCTTCGCACGCTTGCTCAGGAGCTGTGA
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