Gcaud8535.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8535.t1
Unique Name	Gcaud8535.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_907_length_16250_cov_3.969800	contig	NODE_907_length_16250_cov_3.969800:15139..16143 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6239.Y34B4A.8b
Preferred name	ARHGAP17
PFAMs	BAR,RhoGAP
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K20638,ko:K21067
KEGG Pathway	ko04530,map04530
GOs	GO:0002009,GO:0002165,GO:0002791,GO:0002793,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0005923,GO:0006810,GO:0006886,GO:0006887,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007444,GO:0007478,GO:0007480,GO:0007552,GO:0007560,GO:0008047,GO:0008064,GO:0008104,GO:0008150,GO:0008289,GO:0008582,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010769,GO:0010975,GO:0014069,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0017016,GO:0017048,GO:0017124,GO:0017156,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030036,GO:0030054,GO:0030154,GO:0030234,GO:0030425,GO:0030695,GO:0030832,GO:0030833,GO:0030837,GO:0031252,GO:0031256,GO:0031267,GO:0031333,GO:0031344,GO:0031503,GO:0031594,GO:0032271,GO:0032272,GO:0032279,GO:0032501,GO:0032502,GO:0032535,GO:0032594,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0034613,GO:0035020,GO:0035021,GO:0035107,GO:0035114,GO:0035120,GO:0035218,GO:0035239,GO:0035295,GO:0035418,GO:0036477,GO:0040008,GO:0042886,GO:0042995,GO:0043005,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043197,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043296,GO:0043547,GO:0044087,GO:0044089,GO:0044093,GO:0044309,GO:0044424,GO:0044425,GO:0044444,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045595,GO:0045664,GO:0045887,GO:0045927,GO:0046578,GO:0046580,GO:0046903,GO:0046907,GO:0048365,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048786,GO:0048814,GO:0048856,GO:0048869,GO:0050708,GO:0050714,GO:0050767,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051056,GO:0051058,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051493,GO:0051494,GO:0051641,GO:0051649,GO:0051668,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0060284,GO:0060429,GO:0060562,GO:0060589,GO:0060998,GO:0061001,GO:0061024,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070160,GO:0070201,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090066,GO:0090087,GO:0090150,GO:0097120,GO:0097435,GO:0097447,GO:0097458,GO:0098772,GO:0098793,GO:0098794,GO:0098876,GO:0098877,GO:0098886,GO:0098887,GO:0098916,GO:0098969,GO:0098984,GO:0099010,GO:0099072,GO:0099175,GO:0099536,GO:0099537,GO:0099563,GO:0099572,GO:0099632,GO:0099637,GO:0099638,GO:0099639,GO:0110053,GO:0120025,GO:0120035,GO:0120038,GO:1900144,GO:1902531,GO:1902532,GO:1902903,GO:1902904,GO:1903530,GO:1903532,GO:1903539,GO:1903540,GO:1904396,GO:1904398,GO:1904951,GO:1990126,GO:1990255,GO:1990778,GO:2000026,GO:2001284
Evalue	7.6e-05
EggNOG OGs	KOG4270@1\|root,KOG4270@2759\|Eukaryota,38B57@33154\|Opisthokonta,3BEGF@33208\|Metazoa,3CRF0@33213\|Bilateria,40D4F@6231\|Nematoda,1KYY7@119089\|Chromadorea,40UFP@6236\|Rhabditida
Description	GTPase-activator protein for Rho-like GTPases
COG category	T
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8535	Gcaud8535	Gracilaria caudata M_176_S67 male	gene	NODE_907_length_16250_cov_3.969800 15139..16143 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8535.t1.stop1	Gcaud8535.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_907_length_16250_cov_3.969800 15139..15141 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8535.t1.CDS1	Gcaud8535.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_907_length_16250_cov_3.969800 15139..16143 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8535.t1.exon1	Gcaud8535.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_907_length_16250_cov_3.969800 15139..16143 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8535.t1.start1	Gcaud8535.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_907_length_16250_cov_3.969800 16141..16143 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8535.t1	Gcaud8535.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_907_length_16250_cov_3.969800 15139..16143 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_907_length_16250_cov_3.969800:15139..16143-
coding sequence from alignment at NODE_907_length_16250_cov_3.969800:15139..16143-

mRNA sequence

>Gcaud8535.t1 ID=Gcaud8535.t1|Name=Gcaud8535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
MAMAGLHTDALGEPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNA
FMRMQPAANQARQTPHSLAPTSLPSRRPSSQYDAPVEPGCLCFGSSKPSR
RPPTRHVSSHVTRPRREYYPDNLSVQPERHPWTPHMEWLILSCIDFLELN
GLGERTLFAVSAVDDLVRNMHVDIGASLPSNTDPHVAAGVIKAQIRHANE
PLVAKDCLRAYIESQPSADAQGASPLRTAASYRESHLARTVDATARISSR
KRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALL
MLGKITAFVMNMIEDARVFDENLCQKISELQSST*

spliced messenger RNA

>Gcaud8535.t1 ID=Gcaud8535.t1|Name=Gcaud8535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:15139..16143- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATGGCCGGTCTGCACACCGATGCGCTCGGCGAGCCCGCCATCGT
GCGTCAGGAGGATATGATGGCGGGCATGATGGGCGGCGGTGGAACTGGCA
TTGTCGACAACGGCACCAGTCTCATTGCGCGCGCGGAGGCGCTCAACGCC
TTCATGAGGATGCAACCGGCCGCCAATCAGGCCAGACAGACGCCCCATTC
TCTTGCGCCAACCTCCCTACCGTCGCGCCGTCCCTCCTCCCAATACGACG
CGCCCGTGGAGCCTGGCTGTCTTTGTTTCGGATCTTCTAAACCGTCGAGA
CGTCCGCCTACGCGTCATGTGTCCAGTCATGTCACGCGCCCGAGAAGAGA
GTATTACCCGGATAACCTGTCCGTGCAACCGGAACGTCATCCGTGGACAC
CGCACATGGAATGGCTCATTCTGTCGTGCATCGACTTTCTGGAGCTCAAC
GGTCTGGGTGAACGCACCTTGTTTGCCGTCAGCGCCGTCGACGATCTGGT
GCGCAACATGCACGTCGACATTGGCGCAAGTCTTCCGTCAAACACCGATC
CGCACGTCGCGGCCGGCGTCATCAAGGCGCAGATCCGCCACGCGAACGAA
CCGCTCGTGGCCAAGGACTGTCTGCGCGCGTACATCGAGTCACAGCCCTC
AGCCGACGCGCAGGGCGCCTCACCGCTGAGAACCGCCGCATCGTATCGCG
AGTCGCATCTCGCGCGCACGGTGGACGCCACTGCTCGCATTTCGTCGCGG
AAGCGGGCGTACATTCTGGCCAGGTTTATGAGGTTGTTGGGGCGCGTTTC
GGCCAACGTGGAGGTGTCCAAGATGAATGCGCATTGTCTGGCCAAATGCG
TGGCGCCTTCCATGCTGCACTGGGACCCTAATTCTAGCTTTGCTTTGCTT
ATGCTGGGAAAGATTACCGCGTTTGTGATGAACATGATTGAGGATGCAAG
GGTGTTTGACGAGAATCTGTGTCAAAAGATATCGGAGCTGCAGTCGAGCA
CGTAG

protein sequence of Gcaud8535.t1

>Gcaud8535.t1 ID=Gcaud8535.t1|Name=Gcaud8535.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MAMAGLHTDALGEPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNA
FMRMQPAANQARQTPHSLAPTSLPSRRPSSQYDAPVEPGCLCFGSSKPSR
RPPTRHVSSHVTRPRREYYPDNLSVQPERHPWTPHMEWLILSCIDFLELN
GLGERTLFAVSAVDDLVRNMHVDIGASLPSNTDPHVAAGVIKAQIRHANE
PLVAKDCLRAYIESQPSADAQGASPLRTAASYRESHLARTVDATARISSR
KRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALL
MLGKITAFVMNMIEDARVFDENLCQKISELQSST*

mRNA from alignment at NODE_907_length_16250_cov_3.969800:15139..16143-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8535.t1 ID=Gcaud8535.t1|Name=Gcaud8535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:15139..16143- (Gracilaria caudata M_176_S67 male)
ATGGCCATGGCCGGTCTGCACACCGATGCGCTCGGCGAGCCCGCCATCGT
GCGTCAGGAGGATATGATGGCGGGCATGATGGGCGGCGGTGGAACTGGCA
TTGTCGACAACGGCACCAGTCTCATTGCGCGCGCGGAGGCGCTCAACGCC
TTCATGAGGATGCAACCGGCCGCCAATCAGGCCAGACAGACGCCCCATTC
TCTTGCGCCAACCTCCCTACCGTCGCGCCGTCCCTCCTCCCAATACGACG
CGCCCGTGGAGCCTGGCTGTCTTTGTTTCGGATCTTCTAAACCGTCGAGA
CGTCCGCCTACGCGTCATGTGTCCAGTCATGTCACGCGCCCGAGAAGAGA
GTATTACCCGGATAACCTGTCCGTGCAACCGGAACGTCATCCGTGGACAC
CGCACATGGAATGGCTCATTCTGTCGTGCATCGACTTTCTGGAGCTCAAC
GGTCTGGGTGAACGCACCTTGTTTGCCGTCAGCGCCGTCGACGATCTGGT
GCGCAACATGCACGTCGACATTGGCGCAAGTCTTCCGTCAAACACCGATC
CGCACGTCGCGGCCGGCGTCATCAAGGCGCAGATCCGCCACGCGAACGAA
CCGCTCGTGGCCAAGGACTGTCTGCGCGCGTACATCGAGTCACAGCCCTC
AGCCGACGCGCAGGGCGCCTCACCGCTGAGAACCGCCGCATCGTATCGCG
AGTCGCATCTCGCGCGCACGGTGGACGCCACTGCTCGCATTTCGTCGCGG
AAGCGGGCGTACATTCTGGCCAGGTTTATGAGGTTGTTGGGGCGCGTTTC
GGCCAACGTGGAGGTGTCCAAGATGAATGCGCATTGTCTGGCCAAATGCG
TGGCGCCTTCCATGCTGCACTGGGACCCTAATTCTAGCTTTGCTTTGCTT
ATGCTGGGAAAGATTACCGCGTTTGTGATGAACATGATTGAGGATGCAAG
GGTGTTTGACGAGAATCTGTGTCAAAAGATATCGGAGCTGCAGTCGAGCA
CGTAG

Coding sequence (CDS) from alignment at NODE_907_length_16250_cov_3.969800:15139..16143-

>Gcaud8535.t1 ID=Gcaud8535.t1|Name=Gcaud8535.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:15139..16143- (Gracilaria caudata M_176_S67 male)
ATGGCCATGGCCGGTCTGCACACCGATGCGCTCGGCGAGCCCGCCATCGT
GCGTCAGGAGGATATGATGGCGGGCATGATGGGCGGCGGTGGAACTGGCA
TTGTCGACAACGGCACCAGTCTCATTGCGCGCGCGGAGGCGCTCAACGCC
TTCATGAGGATGCAACCGGCCGCCAATCAGGCCAGACAGACGCCCCATTC
TCTTGCGCCAACCTCCCTACCGTCGCGCCGTCCCTCCTCCCAATACGACG
CGCCCGTGGAGCCTGGCTGTCTTTGTTTCGGATCTTCTAAACCGTCGAGA
CGTCCGCCTACGCGTCATGTGTCCAGTCATGTCACGCGCCCGAGAAGAGA
GTATTACCCGGATAACCTGTCCGTGCAACCGGAACGTCATCCGTGGACAC
CGCACATGGAATGGCTCATTCTGTCGTGCATCGACTTTCTGGAGCTCAAC
GGTCTGGGTGAACGCACCTTGTTTGCCGTCAGCGCCGTCGACGATCTGGT
GCGCAACATGCACGTCGACATTGGCGCAAGTCTTCCGTCAAACACCGATC
CGCACGTCGCGGCCGGCGTCATCAAGGCGCAGATCCGCCACGCGAACGAA
CCGCTCGTGGCCAAGGACTGTCTGCGCGCGTACATCGAGTCACAGCCCTC
AGCCGACGCGCAGGGCGCCTCACCGCTGAGAACCGCCGCATCGTATCGCG
AGTCGCATCTCGCGCGCACGGTGGACGCCACTGCTCGCATTTCGTCGCGG
AAGCGGGCGTACATTCTGGCCAGGTTTATGAGGTTGTTGGGGCGCGTTTC
GGCCAACGTGGAGGTGTCCAAGATGAATGCGCATTGTCTGGCCAAATGCG
TGGCGCCTTCCATGCTGCACTGGGACCCTAATTCTAGCTTTGCTTTGCTT
ATGCTGGGAAAGATTACCGCGTTTGTGATGAACATGATTGAGGATGCAAG
GGTGTTTGACGAGAATCTGTGTCAAAAGATATCGGAGCTGCAGTCGAGCA
CGTAG