Gcaud8532.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8532.t1
Unique Name	Gcaud8532.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	789

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_907_length_16250_cov_3.969800	contig	NODE_907_length_16250_cov_3.969800:7317..9683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705591.1
PFAMs	PHM7_cyt,RSN1_7TM,RSN1_TM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21989
Evalue	4.17e-80
EggNOG OGs	COG5594@1\|root,KOG1134@2759\|Eukaryota
Description	ion transport
COG category	I
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8532	Gcaud8532	Gracilaria caudata M_176_S67 male	gene	NODE_907_length_16250_cov_3.969800 7317..9683 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8532.t1.start1	Gcaud8532.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_907_length_16250_cov_3.969800 7317..7319 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8532.t1.CDS1	Gcaud8532.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_907_length_16250_cov_3.969800 7317..9683 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8532.t1.exon1	Gcaud8532.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_907_length_16250_cov_3.969800 7317..9683 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8532.t1.stop1	Gcaud8532.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_907_length_16250_cov_3.969800 9681..9683 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8532.t1	Gcaud8532.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_907_length_16250_cov_3.969800 7317..9683 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_907_length_16250_cov_3.969800:7317..9683+
coding sequence from alignment at NODE_907_length_16250_cov_3.969800:7317..9683+

mRNA sequence

>Gcaud8532.t1 ID=Gcaud8532.t1|Name=Gcaud8532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=789bp
MAELDSQTWGLILNLCVGTATVIICLIAFDILRRRVPSVFEARRALNNAR
LRLDYFGNRVYSPPPPSYRLLGWLAPLVRIELDTVAVTHGLDTALFLRYL
RTMAALFLLMFVPAIVLLPVFKTADFLSQTNPDTVGVQMFSLSNVDPNDK
WRFWVVLAMDYLVLIITCHVIYREFQVYTKHRKSYRASSNPANYAIVVQD
IPEQNCSEQAIYEYWNALLPNKIARVFFVRDASKLVTKHQKFWMAVKKRE
RAEWDLHFNEKLHGRRPTHKVGFCSCCRGSSAAVDSINYWAEQQHHYANK
ITLYQQSSNVNLSPPTRAAVIVFTTRRAASDAAQINFARSPNEWRVERAP
EPKSVNWPAFGIPGWQRGIRTTITTFCSMLLVLFWIIPVTFIMSLTNLQQ
LAELEIRGQTPFSFLDGVQDWIPALNGFIESFLPAIILSVFLGLIPTFFR
IFVSISRISSIAKIDMYIRDWYFTFVVFSNFLFVIVAGSLLDKLVEIIQE
PGQAAEFLASSAPKQGAFMMNFILLKALSETPKEILQIGRVVVRAIFLKY
FARTTREKNDVETGSTLFQYYRYYGIAQLIALLGLIYSTIAPFIIPITFV
YFAVMYLVWKYNLCFSLHNDYEDGGRMYGGALYALWLSVFLHFVTMIGIF
GVNENPAQSVLVVLPAVISVVFLFYCRRRFLRVCEHGSVLETQIVVDEQD
GVDMIPDELAAKYLHPGFELLPDPIENLNGVDDKTGDRTPELQEDIELGS
IPVSGKKGLDQPPQNSVSSEEWKDAFGTAPLEENTHPP*

spliced messenger RNA

>Gcaud8532.t1 ID=Gcaud8532.t1|Name=Gcaud8532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2367bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:7317..9683+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAACTGGACAGTCAGACATGGGGTCTCATCCTCAATCTGTGCGT
GGGAACAGCCACCGTCATCATCTGTCTCATCGCCTTCGACATCCTTCGTC
GACGCGTGCCCTCCGTGTTCGAGGCTCGTCGCGCGCTCAACAACGCCCGA
TTACGCCTTGATTACTTTGGCAACCGCGTGTATAGTCCGCCTCCGCCTTC
GTACAGACTGCTTGGATGGCTCGCGCCCCTCGTTCGTATTGAATTGGATA
CCGTTGCCGTTACACACGGTCTCGATACCGCTTTGTTTTTGCGATACTTG
AGAACCATGGCAGCGCTCTTTTTGCTGATGTTTGTCCCGGCTATTGTGCT
TTTGCCTGTATTTAAAACCGCCGATTTTCTGTCGCAGACCAACCCGGATA
CCGTTGGCGTTCAGATGTTTTCGCTGTCCAATGTCGATCCGAACGACAAG
TGGAGGTTTTGGGTGGTGCTTGCCATGGATTATCTCGTGCTCATTATCAC
CTGTCACGTCATCTACCGAGAGTTTCAGGTGTATACAAAGCATCGAAAGA
GTTATCGTGCCTCCAGTAATCCTGCCAATTATGCCATCGTTGTTCAGGAT
ATTCCCGAACAAAATTGTTCCGAACAAGCCATTTATGAATATTGGAACGC
GCTGCTGCCCAACAAGATTGCAAGGGTCTTCTTCGTGCGAGATGCGTCAA
AGCTTGTCACCAAGCATCAAAAGTTTTGGATGGCCGTTAAAAAGAGAGAG
CGAGCCGAGTGGGATCTTCACTTCAATGAAAAACTGCATGGTAGACGACC
TACGCACAAGGTTGGCTTCTGCTCTTGTTGTCGAGGTTCTTCTGCTGCCG
TGGATTCCATAAATTATTGGGCTGAACAGCAACATCATTACGCCAACAAG
ATTACTCTTTATCAACAATCATCCAACGTCAATCTCTCGCCGCCAACCAG
AGCAGCAGTCATCGTGTTTACAACTCGCAGAGCCGCCAGCGACGCCGCGC
AAATAAACTTTGCTCGCAGTCCCAACGAGTGGCGAGTCGAACGTGCCCCG
GAGCCAAAATCTGTCAACTGGCCTGCGTTTGGTATTCCCGGCTGGCAAAG
GGGCATACGAACAACCATTACCACCTTCTGTTCTATGCTTCTCGTATTGT
TTTGGATTATTCCTGTTACCTTCATCATGAGTCTCACTAATCTCCAACAA
CTTGCCGAGCTTGAAATTCGTGGCCAGACTCCGTTTTCGTTCCTGGACGG
CGTTCAGGATTGGATCCCGGCGCTCAATGGTTTCATTGAAAGTTTCTTGC
CAGCTATTATTCTGTCGGTGTTCCTGGGTTTGATACCAACCTTCTTTCGC
ATATTTGTGTCCATATCCAGGATTTCTTCCATTGCTAAGATCGACATGTA
CATCAGGGATTGGTACTTCACTTTTGTGGTGTTCTCAAATTTCCTGTTTG
TCATTGTCGCGGGATCGCTGTTAGACAAGCTTGTTGAAATCATTCAGGAA
CCTGGCCAGGCTGCCGAATTTCTCGCGTCTTCTGCTCCGAAGCAAGGCGC
ATTCATGATGAATTTCATCCTTCTCAAAGCGCTGTCCGAAACGCCCAAAG
AAATCCTTCAGATTGGTCGAGTGGTTGTTCGTGCCATATTCCTCAAGTAC
TTTGCACGTACAACTCGCGAAAAGAATGATGTTGAGACAGGCTCTACGCT
CTTTCAATATTACCGCTATTACGGTATTGCGCAGCTTATCGCTCTTCTTG
GTCTCATATACAGCACGATCGCGCCTTTTATTATTCCTATCACATTTGTG
TACTTTGCTGTCATGTATTTGGTGTGGAAGTACAACTTGTGCTTCTCGCT
GCACAACGACTACGAGGATGGTGGTCGTATGTATGGCGGCGCTCTGTACG
CACTGTGGTTGAGCGTGTTCTTGCATTTTGTGACCATGATTGGAATCTTC
GGCGTGAACGAAAACCCGGCGCAGTCTGTCTTGGTCGTGCTTCCGGCAGT
AATTTCCGTGGTGTTCCTATTTTACTGCCGAAGAAGATTTTTGAGGGTGT
GTGAGCATGGCTCGGTGCTTGAGACTCAGATTGTCGTGGATGAACAAGAC
GGTGTCGATATGATTCCTGATGAACTTGCAGCAAAGTACCTACATCCAGG
CTTTGAACTTCTGCCCGATCCGATTGAGAATCTCAACGGTGTGGACGACA
AGACTGGTGATAGAACTCCCGAATTGCAGGAGGACATAGAGTTGGGGTCG
ATTCCTGTCAGTGGCAAGAAAGGACTGGACCAACCTCCTCAAAACTCGGT
TTCAAGTGAAGAATGGAAAGATGCGTTTGGAACAGCACCTCTTGAGGAGA
ACACCCACCCGCCATGA

protein sequence of Gcaud8532.t1

>Gcaud8532.t1 ID=Gcaud8532.t1|Name=Gcaud8532.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=789bp
MAELDSQTWGLILNLCVGTATVIICLIAFDILRRRVPSVFEARRALNNAR
LRLDYFGNRVYSPPPPSYRLLGWLAPLVRIELDTVAVTHGLDTALFLRYL
RTMAALFLLMFVPAIVLLPVFKTADFLSQTNPDTVGVQMFSLSNVDPNDK
WRFWVVLAMDYLVLIITCHVIYREFQVYTKHRKSYRASSNPANYAIVVQD
IPEQNCSEQAIYEYWNALLPNKIARVFFVRDASKLVTKHQKFWMAVKKRE
RAEWDLHFNEKLHGRRPTHKVGFCSCCRGSSAAVDSINYWAEQQHHYANK
ITLYQQSSNVNLSPPTRAAVIVFTTRRAASDAAQINFARSPNEWRVERAP
EPKSVNWPAFGIPGWQRGIRTTITTFCSMLLVLFWIIPVTFIMSLTNLQQ
LAELEIRGQTPFSFLDGVQDWIPALNGFIESFLPAIILSVFLGLIPTFFR
IFVSISRISSIAKIDMYIRDWYFTFVVFSNFLFVIVAGSLLDKLVEIIQE
PGQAAEFLASSAPKQGAFMMNFILLKALSETPKEILQIGRVVVRAIFLKY
FARTTREKNDVETGSTLFQYYRYYGIAQLIALLGLIYSTIAPFIIPITFV
YFAVMYLVWKYNLCFSLHNDYEDGGRMYGGALYALWLSVFLHFVTMIGIF
GVNENPAQSVLVVLPAVISVVFLFYCRRRFLRVCEHGSVLETQIVVDEQD
GVDMIPDELAAKYLHPGFELLPDPIENLNGVDDKTGDRTPELQEDIELGS
IPVSGKKGLDQPPQNSVSSEEWKDAFGTAPLEENTHPP*

mRNA from alignment at NODE_907_length_16250_cov_3.969800:7317..9683+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8532.t1 ID=Gcaud8532.t1|Name=Gcaud8532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2367bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:7317..9683+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAACTGGACAGTCAGACATGGGGTCTCATCCTCAATCTGTGCGT
GGGAACAGCCACCGTCATCATCTGTCTCATCGCCTTCGACATCCTTCGTC
GACGCGTGCCCTCCGTGTTCGAGGCTCGTCGCGCGCTCAACAACGCCCGA
TTACGCCTTGATTACTTTGGCAACCGCGTGTATAGTCCGCCTCCGCCTTC
GTACAGACTGCTTGGATGGCTCGCGCCCCTCGTTCGTATTGAATTGGATA
CCGTTGCCGTTACACACGGTCTCGATACCGCTTTGTTTTTGCGATACTTG
AGAACCATGGCAGCGCTCTTTTTGCTGATGTTTGTCCCGGCTATTGTGCT
TTTGCCTGTATTTAAAACCGCCGATTTTCTGTCGCAGACCAACCCGGATA
CCGTTGGCGTTCAGATGTTTTCGCTGTCCAATGTCGATCCGAACGACAAG
TGGAGGTTTTGGGTGGTGCTTGCCATGGATTATCTCGTGCTCATTATCAC
CTGTCACGTCATCTACCGAGAGTTTCAGGTGTATACAAAGCATCGAAAGA
GTTATCGTGCCTCCAGTAATCCTGCCAATTATGCCATCGTTGTTCAGGAT
ATTCCCGAACAAAATTGTTCCGAACAAGCCATTTATGAATATTGGAACGC
GCTGCTGCCCAACAAGATTGCAAGGGTCTTCTTCGTGCGAGATGCGTCAA
AGCTTGTCACCAAGCATCAAAAGTTTTGGATGGCCGTTAAAAAGAGAGAG
CGAGCCGAGTGGGATCTTCACTTCAATGAAAAACTGCATGGTAGACGACC
TACGCACAAGGTTGGCTTCTGCTCTTGTTGTCGAGGTTCTTCTGCTGCCG
TGGATTCCATAAATTATTGGGCTGAACAGCAACATCATTACGCCAACAAG
ATTACTCTTTATCAACAATCATCCAACGTCAATCTCTCGCCGCCAACCAG
AGCAGCAGTCATCGTGTTTACAACTCGCAGAGCCGCCAGCGACGCCGCGC
AAATAAACTTTGCTCGCAGTCCCAACGAGTGGCGAGTCGAACGTGCCCCG
GAGCCAAAATCTGTCAACTGGCCTGCGTTTGGTATTCCCGGCTGGCAAAG
GGGCATACGAACAACCATTACCACCTTCTGTTCTATGCTTCTCGTATTGT
TTTGGATTATTCCTGTTACCTTCATCATGAGTCTCACTAATCTCCAACAA
CTTGCCGAGCTTGAAATTCGTGGCCAGACTCCGTTTTCGTTCCTGGACGG
CGTTCAGGATTGGATCCCGGCGCTCAATGGTTTCATTGAAAGTTTCTTGC
CAGCTATTATTCTGTCGGTGTTCCTGGGTTTGATACCAACCTTCTTTCGC
ATATTTGTGTCCATATCCAGGATTTCTTCCATTGCTAAGATCGACATGTA
CATCAGGGATTGGTACTTCACTTTTGTGGTGTTCTCAAATTTCCTGTTTG
TCATTGTCGCGGGATCGCTGTTAGACAAGCTTGTTGAAATCATTCAGGAA
CCTGGCCAGGCTGCCGAATTTCTCGCGTCTTCTGCTCCGAAGCAAGGCGC
ATTCATGATGAATTTCATCCTTCTCAAAGCGCTGTCCGAAACGCCCAAAG
AAATCCTTCAGATTGGTCGAGTGGTTGTTCGTGCCATATTCCTCAAGTAC
TTTGCACGTACAACTCGCGAAAAGAATGATGTTGAGACAGGCTCTACGCT
CTTTCAATATTACCGCTATTACGGTATTGCGCAGCTTATCGCTCTTCTTG
GTCTCATATACAGCACGATCGCGCCTTTTATTATTCCTATCACATTTGTG
TACTTTGCTGTCATGTATTTGGTGTGGAAGTACAACTTGTGCTTCTCGCT
GCACAACGACTACGAGGATGGTGGTCGTATGTATGGCGGCGCTCTGTACG
CACTGTGGTTGAGCGTGTTCTTGCATTTTGTGACCATGATTGGAATCTTC
GGCGTGAACGAAAACCCGGCGCAGTCTGTCTTGGTCGTGCTTCCGGCAGT
AATTTCCGTGGTGTTCCTATTTTACTGCCGAAGAAGATTTTTGAGGGTGT
GTGAGCATGGCTCGGTGCTTGAGACTCAGATTGTCGTGGATGAACAAGAC
GGTGTCGATATGATTCCTGATGAACTTGCAGCAAAGTACCTACATCCAGG
CTTTGAACTTCTGCCCGATCCGATTGAGAATCTCAACGGTGTGGACGACA
AGACTGGTGATAGAACTCCCGAATTGCAGGAGGACATAGAGTTGGGGTCG
ATTCCTGTCAGTGGCAAGAAAGGACTGGACCAACCTCCTCAAAACTCGGT
TTCAAGTGAAGAATGGAAAGATGCGTTTGGAACAGCACCTCTTGAGGAGA
ACACCCACCCGCCATGA

Coding sequence (CDS) from alignment at NODE_907_length_16250_cov_3.969800:7317..9683+

>Gcaud8532.t1 ID=Gcaud8532.t1|Name=Gcaud8532.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2367bp|location=Sequence derived from alignment at NODE_907_length_16250_cov_3.969800:7317..9683+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAACTGGACAGTCAGACATGGGGTCTCATCCTCAATCTGTGCGT
GGGAACAGCCACCGTCATCATCTGTCTCATCGCCTTCGACATCCTTCGTC
GACGCGTGCCCTCCGTGTTCGAGGCTCGTCGCGCGCTCAACAACGCCCGA
TTACGCCTTGATTACTTTGGCAACCGCGTGTATAGTCCGCCTCCGCCTTC
GTACAGACTGCTTGGATGGCTCGCGCCCCTCGTTCGTATTGAATTGGATA
CCGTTGCCGTTACACACGGTCTCGATACCGCTTTGTTTTTGCGATACTTG
AGAACCATGGCAGCGCTCTTTTTGCTGATGTTTGTCCCGGCTATTGTGCT
TTTGCCTGTATTTAAAACCGCCGATTTTCTGTCGCAGACCAACCCGGATA
CCGTTGGCGTTCAGATGTTTTCGCTGTCCAATGTCGATCCGAACGACAAG
TGGAGGTTTTGGGTGGTGCTTGCCATGGATTATCTCGTGCTCATTATCAC
CTGTCACGTCATCTACCGAGAGTTTCAGGTGTATACAAAGCATCGAAAGA
GTTATCGTGCCTCCAGTAATCCTGCCAATTATGCCATCGTTGTTCAGGAT
ATTCCCGAACAAAATTGTTCCGAACAAGCCATTTATGAATATTGGAACGC
GCTGCTGCCCAACAAGATTGCAAGGGTCTTCTTCGTGCGAGATGCGTCAA
AGCTTGTCACCAAGCATCAAAAGTTTTGGATGGCCGTTAAAAAGAGAGAG
CGAGCCGAGTGGGATCTTCACTTCAATGAAAAACTGCATGGTAGACGACC
TACGCACAAGGTTGGCTTCTGCTCTTGTTGTCGAGGTTCTTCTGCTGCCG
TGGATTCCATAAATTATTGGGCTGAACAGCAACATCATTACGCCAACAAG
ATTACTCTTTATCAACAATCATCCAACGTCAATCTCTCGCCGCCAACCAG
AGCAGCAGTCATCGTGTTTACAACTCGCAGAGCCGCCAGCGACGCCGCGC
AAATAAACTTTGCTCGCAGTCCCAACGAGTGGCGAGTCGAACGTGCCCCG
GAGCCAAAATCTGTCAACTGGCCTGCGTTTGGTATTCCCGGCTGGCAAAG
GGGCATACGAACAACCATTACCACCTTCTGTTCTATGCTTCTCGTATTGT
TTTGGATTATTCCTGTTACCTTCATCATGAGTCTCACTAATCTCCAACAA
CTTGCCGAGCTTGAAATTCGTGGCCAGACTCCGTTTTCGTTCCTGGACGG
CGTTCAGGATTGGATCCCGGCGCTCAATGGTTTCATTGAAAGTTTCTTGC
CAGCTATTATTCTGTCGGTGTTCCTGGGTTTGATACCAACCTTCTTTCGC
ATATTTGTGTCCATATCCAGGATTTCTTCCATTGCTAAGATCGACATGTA
CATCAGGGATTGGTACTTCACTTTTGTGGTGTTCTCAAATTTCCTGTTTG
TCATTGTCGCGGGATCGCTGTTAGACAAGCTTGTTGAAATCATTCAGGAA
CCTGGCCAGGCTGCCGAATTTCTCGCGTCTTCTGCTCCGAAGCAAGGCGC
ATTCATGATGAATTTCATCCTTCTCAAAGCGCTGTCCGAAACGCCCAAAG
AAATCCTTCAGATTGGTCGAGTGGTTGTTCGTGCCATATTCCTCAAGTAC
TTTGCACGTACAACTCGCGAAAAGAATGATGTTGAGACAGGCTCTACGCT
CTTTCAATATTACCGCTATTACGGTATTGCGCAGCTTATCGCTCTTCTTG
GTCTCATATACAGCACGATCGCGCCTTTTATTATTCCTATCACATTTGTG
TACTTTGCTGTCATGTATTTGGTGTGGAAGTACAACTTGTGCTTCTCGCT
GCACAACGACTACGAGGATGGTGGTCGTATGTATGGCGGCGCTCTGTACG
CACTGTGGTTGAGCGTGTTCTTGCATTTTGTGACCATGATTGGAATCTTC
GGCGTGAACGAAAACCCGGCGCAGTCTGTCTTGGTCGTGCTTCCGGCAGT
AATTTCCGTGGTGTTCCTATTTTACTGCCGAAGAAGATTTTTGAGGGTGT
GTGAGCATGGCTCGGTGCTTGAGACTCAGATTGTCGTGGATGAACAAGAC
GGTGTCGATATGATTCCTGATGAACTTGCAGCAAAGTACCTACATCCAGG
CTTTGAACTTCTGCCCGATCCGATTGAGAATCTCAACGGTGTGGACGACA
AGACTGGTGATAGAACTCCCGAATTGCAGGAGGACATAGAGTTGGGGTCG
ATTCCTGTCAGTGGCAAGAAAGGACTGGACCAACCTCCTCAAAACTCGGT
TTCAAGTGAAGAATGGAAAGATGCGTTTGGAACAGCACCTCTTGAGGAGA
ACACCCACCCGCCATGA