Gcaud2082.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2082.t1
Unique NameGcaud2082.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length494
Homology
BLAST of Gcaud2082.t1 vs. uniprot
Match: A0A2V3ITF6_9FLOR (JmjC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITF6_9FLOR)

HSP 1 Score: 558 bits (1438), Expect = 6.620e-195
Identity = 266/435 (61.15%), Postives = 341/435 (78.39%), Query Frame = 0
Query:   45 MQMLLNDEDTYETFFSHNFERHALHVDDSYRSNRAVWMRMHRRFIPNHDIDNLLNMSSRTFSLTIPTDLELTRYNSSSLVHEHLPPGRAPDLLTIQDFFRDGFELVLHRMQMRSATIARFADSLSAFWHVSVEPSLHFCPPTSSTKHVQHPRAATLRNGELFIVVLDGELVASVHEAAHEFPLPYETGHNSHNILSSIQNPSPKTISLDEGDVLYVPRGSAVYFVARGSPALYLSFHIRTDEIPATMVLRSMLSVAQKRSEGPLGEFAATHLHWSDVVDCAIRVAHNVVPPLRRFFPLSGAIVDALEDAGKPVGQDVAVDVLQKFVVSAVNTFFDPFVTAITEGDVNVEDSLLRWAKQISRERHDSSSYRQAKEMFRLCLDWLGRQSEAPSDGISQLALDWFTAMEAKRKPELEERYYAFQAQRIEEDKVEDDLI 479
            M +LL+DEDTYETFFS+NFE H++HVDDSYRS+R+ WM++HRRFIPNHDID LLN SS+    +I  D++LTR+NS   V E+L PG+AP L T+Q +F++GFEL+L+RM +RS+ +ARFADSLS+FWHV VE SLHFCPP+SS KH   P AATLR GE F+VVLD EL A VHE    FPL  +   ++H+ILS ++NPSP+T +LDEGD+LYVPRGSA   VAR +PALY+SFH+RTDE+PA+ VL+S+   AQKRSEGPL +FA   L W+DVV C IR+AH ++ PLRRF PLSG I +ALEDAGKP GQ+VAVDVLQKFVV+AV+  FDPF+ A+ + +++V+D+L  WA  +   +  S +Y QAKEMF+LC+DWLGRQS+AP+DG+SQL L WF+ +E +R+ E +ER  AF  Q I+ED  EDDLI
Sbjct:    1 MNLLLHDEDTYETFFSYNFEHHSMHVDDSYRSDRSKWMKIHRRFIPNHDIDKLLNTSSQMLPFSISADVQLTRFNSGKFVREYLAPGKAPALPTLQSYFKEGFELILNRMHLRSSGVARFADSLSSFWHVRVESSLHFCPPSSSMKHSSDPLAATLRAGETFVVVLDDELAAYVHEDVQSFPLLDDLATDAHSILSRVRNPSPRTFALDEGDMLYVPRGSAFNIVARNTPALYISFHVRTDELPASSVLQSISRAAQKRSEGPLDQFATPQLPWTDVVSCTIRLAHELISPLRRFLPLSGGISEALEDAGKPTGQEVAVDVLQKFVVAAVDALFDPFIEAVAQKEIDVDDALFSWANDLFIRKESSVTYGQAKEMFKLCMDWLGRQSDAPNDGVSQLILTWFSELEERRRIEYKERISAFSIQGIQED-AEDDLI 434          
BLAST of Gcaud2082.t1 vs. uniprot
Match: A0A5J4Z3C1_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3C1_PORPP)

HSP 1 Score: 72.0 bits (175), Expect = 9.600e-10
Identity = 74/304 (24.34%), Postives = 118/304 (38.82%), Query Frame = 0
Query:   58 FFSHNFERHALHVDDSYRSN--RAVWMRMHRRFIPNHDIDNLLNMSSRTFSLTIPT----DLELTRYNSSS----LVHEHLPPGRAPD----------LLTIQDFFRDG-FELVLHRMQMRSATIARFADSLSAFWHVSVEPSLHFCPPTSSTKHVQHPRAATLRNGELFIVVLDGELVASVHEAAHEFPLPYETGHNSHNILSSIQNPSPK--TISLDEGDVLYVPRGSAVYFVARGSPALYLSFHIRTDEIPATMVLRSMLSVAQKRSEGPLGEFAATHLHWSDVVDCAIRVAHNVVPPLRR 338
            ++  +F+ H L V    RS   R  WM+ +RRF+P  ++  +L  +   F    P     D++L+ +        +  E+   G   +          L  IQ  FR G +EL + R + RSA +A     L   + V V   + F P   +T  +           + F+V  DG     +++   E P    + H    +  +     P   T++L EGDV+YVPRG  V    R +  +++   +   E      L  ML         PLG+   T+    D    A        P LRR
Sbjct:   51 WWEEDFQTHPLVVQLGSRSGEERVRWMKKYRRFVPGDNLQQVLGKNRSAFERHAPIKYRQDVQLSMWEGLDRMVVIADENYLTGAGAEQEASAELQVPLEAIQSAFRQGKYELQVFRAEYRSAELAELCVQLEKLFGVPVSAEISFLPLDYATPILSSA-------ADRFLVAFDGRFQLDLYKPVIELP----SRHLEVPVRPATGEDEPPFLTVTLKEGDVVYVPRGWGVRATTRRTFGIFVDISVHVYESMVVDALTQMLEDIMM----PLGQDFETYFDTGDNEASASDDDEASTPHLRR 339          
The following BLAST results are available for this feature:
BLAST of Gcaud2082.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITF6_9FLOR6.620e-19561.15JmjC domain-containing protein n=1 Tax=Gracilariop... [more]
A0A5J4Z3C1_PORPP9.600e-1024.34Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.650Cupincoord: 36..285
e-value: 7.9E-14
score: 53.5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..493
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 202..282

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_906_length_16253_cov_4.271192contigNODE_906_length_16253_cov_4.271192:9053..10534 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2082.t1Gcaud2082.t1Gracilaria caudata M_176_S67 malemRNANODE_906_length_16253_cov_4.271192 9053..10534 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2082.t1 ID=Gcaud2082.t1|Name=Gcaud2082.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=494bp
MLTLITLVLAPVLCLATIDKHPSSKCKVKLPSPTITSRPPHLPAMQMLLN
DEDTYETFFSHNFERHALHVDDSYRSNRAVWMRMHRRFIPNHDIDNLLNM
SSRTFSLTIPTDLELTRYNSSSLVHEHLPPGRAPDLLTIQDFFRDGFELV
LHRMQMRSATIARFADSLSAFWHVSVEPSLHFCPPTSSTKHVQHPRAATL
RNGELFIVVLDGELVASVHEAAHEFPLPYETGHNSHNILSSIQNPSPKTI
SLDEGDVLYVPRGSAVYFVARGSPALYLSFHIRTDEIPATMVLRSMLSVA
QKRSEGPLGEFAATHLHWSDVVDCAIRVAHNVVPPLRRFFPLSGAIVDAL
EDAGKPVGQDVAVDVLQKFVVSAVNTFFDPFVTAITEGDVNVEDSLLRWA
KQISRERHDSSSYRQAKEMFRLCLDWLGRQSEAPSDGISQLALDWFTAME
AKRKPELEERYYAFQAQRIEEDKVEDDLICSEEEDFCSLASTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin_sf