Gcaud8626.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8626.t1
Unique Name	Gcaud8626.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	482

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_901_length_16318_cov_4.606212	contig	NODE_901_length_16318_cov_4.606212:12082..13527 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8626	Gcaud8626	Gracilaria caudata M_176_S67 male	gene	NODE_901_length_16318_cov_4.606212 12082..13527 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8626.t1.start1	Gcaud8626.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_901_length_16318_cov_4.606212 12082..12084 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8626.t1.CDS1	Gcaud8626.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_901_length_16318_cov_4.606212 12082..13527 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8626.t1.exon1	Gcaud8626.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_901_length_16318_cov_4.606212 12082..13527 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8626.t1.stop1	Gcaud8626.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_901_length_16318_cov_4.606212 13525..13527 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8626.t1	Gcaud8626.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_901_length_16318_cov_4.606212 12082..13527 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_901_length_16318_cov_4.606212:12082..13527+
coding sequence from alignment at NODE_901_length_16318_cov_4.606212:12082..13527+

mRNA sequence

>Gcaud8626.t1 ID=Gcaud8626.t1|Name=Gcaud8626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=482bp
MITIRFGSGVVAAFIFLVFELLVFPALLYTTSKTASLFLYWHASKGNDVQ
VSQMKFPLWNEGLSRHQRSHVLLLVVRIILVTIPVYLETRLISRDEPELV
TRNIQTALIPQPADDWFDYQSQAGEDIIELRNLGLETYFACTHMEEDGWV
WAKVANVTLLDGFRQEIRCVSSTQTPIYRLEEEVIDFLGDTDTENITLTV
SMNEGLVKDFPSELVLHGTVEDARPNDEAFRITKVRNLNDTDLDCFFADS
VKTAISRPSNGVRPIEWRGWCQRVQGQMVEFYSLGVELDEIRMSEEFSVS
GAIRTRNGTFDTSVKHRGNFEFKDRILLNAQHLTNVYPGFADSARASDVA
RQVLYSMARNVSVAVQSGRVLHRTEIGADVLVITVAEVAVVVVFTLLMEV
GSRTVWKGVQEPNTVEGLSRFWAQSEALWTAKKRKGGDKWVTLQLCKHGS
DGGGRLLLEPVRARRADEEFGGSDSQRTESD*

spliced messenger RNA

>Gcaud8626.t1 ID=Gcaud8626.t1|Name=Gcaud8626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_901_length_16318_cov_4.606212:12082..13527+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACGATCCGGTTCGGAAGTGGAGTGGTCGCTGCTTTCATCTTTCT
CGTCTTCGAACTTTTGGTGTTTCCCGCATTGCTCTACACCACATCAAAAA
CCGCGTCGCTCTTCCTGTACTGGCATGCAAGCAAGGGAAATGACGTACAG
GTTTCGCAAATGAAGTTTCCCCTATGGAACGAAGGACTTAGTCGTCACCA
GCGCTCACATGTACTTCTACTCGTTGTCCGGATTATTCTCGTTACTATTC
CAGTCTACCTGGAGACAAGACTCATCTCCCGTGATGAACCAGAACTGGTC
ACAAGGAACATTCAGACGGCTCTTATACCACAACCAGCAGATGATTGGTT
CGACTATCAAAGCCAAGCTGGGGAGGACATTATTGAGCTGCGAAATCTTG
GGCTGGAGACATATTTCGCGTGCACGCACATGGAAGAAGACGGGTGGGTA
TGGGCAAAGGTTGCTAATGTTACGTTGCTTGACGGATTTCGACAAGAGAT
ACGTTGTGTAAGTAGCACGCAGACGCCAATTTACCGACTTGAGGAGGAGG
TTATCGATTTTCTCGGAGACACCGACACGGAAAATATTACTTTGACAGTT
TCCATGAATGAGGGCCTTGTGAAAGACTTTCCATCGGAACTTGTGTTGCA
CGGAACCGTAGAAGATGCGAGACCGAATGACGAAGCGTTCCGGATCACGA
AGGTTAGGAACTTGAACGACACAGATTTGGACTGTTTCTTCGCCGACAGT
GTCAAAACAGCGATTTCGCGACCGTCGAATGGAGTACGTCCAATTGAATG
GCGAGGCTGGTGTCAAAGAGTGCAAGGACAGATGGTGGAGTTCTACAGCC
TGGGAGTGGAGTTGGATGAGATTCGGATGAGCGAGGAGTTCTCTGTGAGC
GGCGCGATCCGCACCAGGAATGGAACGTTTGACACAAGCGTCAAGCACCG
CGGGAACTTTGAGTTCAAGGACCGAATTCTGCTTAACGCACAGCACTTGA
CGAATGTGTATCCAGGGTTTGCTGATTCTGCGCGGGCGTCGGACGTTGCC
AGACAAGTGTTGTACTCGATGGCCAGAAATGTGAGCGTGGCTGTTCAGTC
GGGTCGGGTGCTGCATCGGACAGAGATAGGGGCGGATgtgttggtgatta
cggtggctgaggttgcggtggtggttgtgttcacgctgctgatggaggtg
gGCTCGAGAACAGTGTGGAAGGGTGTGCAAGAACCGAATACTGTGGAAGG
GCTGTCGCGGTTCTGGGCGCAATCTGAGGCACTGTGGACGGCGAAGAAAC
GGAAAGGTGGGGATAAGTGGGTTACTTTGCAGTTGTGCAAACACGGGAGT
GACGGAGGGGGGCGCTTGCTGCTTGAGCCGGTGAGGGCAAGACGCGCGGA
CGAGGAGTTTGGCGGCAGCGATTCGCAGCGAACGGAGTCGGATTAG

protein sequence of Gcaud8626.t1

>Gcaud8626.t1 ID=Gcaud8626.t1|Name=Gcaud8626.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=482bp
MITIRFGSGVVAAFIFLVFELLVFPALLYTTSKTASLFLYWHASKGNDVQ
VSQMKFPLWNEGLSRHQRSHVLLLVVRIILVTIPVYLETRLISRDEPELV
TRNIQTALIPQPADDWFDYQSQAGEDIIELRNLGLETYFACTHMEEDGWV
WAKVANVTLLDGFRQEIRCVSSTQTPIYRLEEEVIDFLGDTDTENITLTV
SMNEGLVKDFPSELVLHGTVEDARPNDEAFRITKVRNLNDTDLDCFFADS
VKTAISRPSNGVRPIEWRGWCQRVQGQMVEFYSLGVELDEIRMSEEFSVS
GAIRTRNGTFDTSVKHRGNFEFKDRILLNAQHLTNVYPGFADSARASDVA
RQVLYSMARNVSVAVQSGRVLHRTEIGADVLVITVAEVAVVVVFTLLMEV
GSRTVWKGVQEPNTVEGLSRFWAQSEALWTAKKRKGGDKWVTLQLCKHGS
DGGGRLLLEPVRARRADEEFGGSDSQRTESD*

mRNA from alignment at NODE_901_length_16318_cov_4.606212:12082..13527+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8626.t1 ID=Gcaud8626.t1|Name=Gcaud8626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_901_length_16318_cov_4.606212:12082..13527+ (Gracilaria caudata M_176_S67 male)
ATGATCACGATCCGGTTCGGAAGTGGAGTGGTCGCTGCTTTCATCTTTCT
CGTCTTCGAACTTTTGGTGTTTCCCGCATTGCTCTACACCACATCAAAAA
CCGCGTCGCTCTTCCTGTACTGGCATGCAAGCAAGGGAAATGACGTACAG
GTTTCGCAAATGAAGTTTCCCCTATGGAACGAAGGACTTAGTCGTCACCA
GCGCTCACATGTACTTCTACTCGTTGTCCGGATTATTCTCGTTACTATTC
CAGTCTACCTGGAGACAAGACTCATCTCCCGTGATGAACCAGAACTGGTC
ACAAGGAACATTCAGACGGCTCTTATACCACAACCAGCAGATGATTGGTT
CGACTATCAAAGCCAAGCTGGGGAGGACATTATTGAGCTGCGAAATCTTG
GGCTGGAGACATATTTCGCGTGCACGCACATGGAAGAAGACGGGTGGGTA
TGGGCAAAGGTTGCTAATGTTACGTTGCTTGACGGATTTCGACAAGAGAT
ACGTTGTGTAAGTAGCACGCAGACGCCAATTTACCGACTTGAGGAGGAGG
TTATCGATTTTCTCGGAGACACCGACACGGAAAATATTACTTTGACAGTT
TCCATGAATGAGGGCCTTGTGAAAGACTTTCCATCGGAACTTGTGTTGCA
CGGAACCGTAGAAGATGCGAGACCGAATGACGAAGCGTTCCGGATCACGA
AGGTTAGGAACTTGAACGACACAGATTTGGACTGTTTCTTCGCCGACAGT
GTCAAAACAGCGATTTCGCGACCGTCGAATGGAGTACGTCCAATTGAATG
GCGAGGCTGGTGTCAAAGAGTGCAAGGACAGATGGTGGAGTTCTACAGCC
TGGGAGTGGAGTTGGATGAGATTCGGATGAGCGAGGAGTTCTCTGTGAGC
GGCGCGATCCGCACCAGGAATGGAACGTTTGACACAAGCGTCAAGCACCG
CGGGAACTTTGAGTTCAAGGACCGAATTCTGCTTAACGCACAGCACTTGA
CGAATGTGTATCCAGGGTTTGCTGATTCTGCGCGGGCGTCGGACGTTGCC
AGACAAGTGTTGTACTCGATGGCCAGAAATGTGAGCGTGGCTGTTCAGTC
GGGTCGGGTGCTGCATCGGACAGAGATAGGGGCGGATgtgttggtgatta
cggtggctgaggttgcggtggtggttgtgttcacgctgctgatggaggtg
gGCTCGAGAACAGTGTGGAAGGGTGTGCAAGAACCGAATACTGTGGAAGG
GCTGTCGCGGTTCTGGGCGCAATCTGAGGCACTGTGGACGGCGAAGAAAC
GGAAAGGTGGGGATAAGTGGGTTACTTTGCAGTTGTGCAAACACGGGAGT
GACGGAGGGGGGCGCTTGCTGCTTGAGCCGGTGAGGGCAAGACGCGCGGA
CGAGGAGTTTGGCGGCAGCGATTCGCAGCGAACGGAGTCGGATTAG

Coding sequence (CDS) from alignment at NODE_901_length_16318_cov_4.606212:12082..13527+

>Gcaud8626.t1 ID=Gcaud8626.t1|Name=Gcaud8626.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1446bp|location=Sequence derived from alignment at NODE_901_length_16318_cov_4.606212:12082..13527+ (Gracilaria caudata M_176_S67 male)
ATGATCACGATCCGGTTCGGAAGTGGAGTGGTCGCTGCTTTCATCTTTCT
CGTCTTCGAACTTTTGGTGTTTCCCGCATTGCTCTACACCACATCAAAAA
CCGCGTCGCTCTTCCTGTACTGGCATGCAAGCAAGGGAAATGACGTACAG
GTTTCGCAAATGAAGTTTCCCCTATGGAACGAAGGACTTAGTCGTCACCA
GCGCTCACATGTACTTCTACTCGTTGTCCGGATTATTCTCGTTACTATTC
CAGTCTACCTGGAGACAAGACTCATCTCCCGTGATGAACCAGAACTGGTC
ACAAGGAACATTCAGACGGCTCTTATACCACAACCAGCAGATGATTGGTT
CGACTATCAAAGCCAAGCTGGGGAGGACATTATTGAGCTGCGAAATCTTG
GGCTGGAGACATATTTCGCGTGCACGCACATGGAAGAAGACGGGTGGGTA
TGGGCAAAGGTTGCTAATGTTACGTTGCTTGACGGATTTCGACAAGAGAT
ACGTTGTGTAAGTAGCACGCAGACGCCAATTTACCGACTTGAGGAGGAGG
TTATCGATTTTCTCGGAGACACCGACACGGAAAATATTACTTTGACAGTT
TCCATGAATGAGGGCCTTGTGAAAGACTTTCCATCGGAACTTGTGTTGCA
CGGAACCGTAGAAGATGCGAGACCGAATGACGAAGCGTTCCGGATCACGA
AGGTTAGGAACTTGAACGACACAGATTTGGACTGTTTCTTCGCCGACAGT
GTCAAAACAGCGATTTCGCGACCGTCGAATGGAGTACGTCCAATTGAATG
GCGAGGCTGGTGTCAAAGAGTGCAAGGACAGATGGTGGAGTTCTACAGCC
TGGGAGTGGAGTTGGATGAGATTCGGATGAGCGAGGAGTTCTCTGTGAGC
GGCGCGATCCGCACCAGGAATGGAACGTTTGACACAAGCGTCAAGCACCG
CGGGAACTTTGAGTTCAAGGACCGAATTCTGCTTAACGCACAGCACTTGA
CGAATGTGTATCCAGGGTTTGCTGATTCTGCGCGGGCGTCGGACGTTGCC
AGACAAGTGTTGTACTCGATGGCCAGAAATGTGAGCGTGGCTGTTCAGTC
GGGTCGGGTGCTGCATCGGACAGAGATAGGGGCGGATgtgttggtgatta
cggtggctgaggttgcggtggtggttgtgttcacgctgctgatggaggtg
gGCTCGAGAACAGTGTGGAAGGGTGTGCAAGAACCGAATACTGTGGAAGG
GCTGTCGCGGTTCTGGGCGCAATCTGAGGCACTGTGGACGGCGAAGAAAC
GGAAAGGTGGGGATAAGTGGGTTACTTTGCAGTTGTGCAAACACGGGAGT
GACGGAGGGGGGCGCTTGCTGCTTGAGCCGGTGAGGGCAAGACGCGCGGA
CGAGGAGTTTGGCGGCAGCGATTCGCAGCGAACGGAGTCGGATTAG