Gcaud10239.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10239.t1
Unique Name	Gcaud10239.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1210_length_12620_cov_4.526778	contig	NODE_1210_length_12620_cov_4.526778:9317..11382 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	568076.XP_007823090.1
PFAMs	SNF
Max annot lvl	4751\|Fungi
KEGG ko	ko:K05034
KEGG TC	2.A.22.3.2
KEGG Pathway	ko04727,map04727
Evalue	4.87e-218
EggNOG OGs	COG0733@1\|root,KOG3660@2759\|Eukaryota,38G22@33154\|Opisthokonta,3NYFJ@4751\|Fungi,3QNAC@4890\|Ascomycota,211DN@147550\|Sordariomycetes,3TCRZ@5125\|Hypocreales
Description	Sodium:neurotransmitter symporter family
COG category	T
BRITE	ko00000,ko00001,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10239	Gcaud10239	Gracilaria caudata M_176_S67 male	gene	NODE_1210_length_12620_cov_4.526778 9317..11382 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10239.t1	Gcaud10239.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1210_length_12620_cov_4.526778 9317..11382 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10239.t1.stop1	Gcaud10239.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1210_length_12620_cov_4.526778 9317..9319 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10239.t1.CDS1	Gcaud10239.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1210_length_12620_cov_4.526778 9317..9727 -
Gcaud10239.t1.CDS2	Gcaud10239.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1210_length_12620_cov_4.526778 9829..11382 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10239.t1.exon1	Gcaud10239.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1210_length_12620_cov_4.526778 9317..9727 -
Gcaud10239.t1.exon2	Gcaud10239.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1210_length_12620_cov_4.526778 9829..11382 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10239.t1.intron1	Gcaud10239.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1210_length_12620_cov_4.526778 9728..9828 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10239.t1.start1	Gcaud10239.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1210_length_12620_cov_4.526778 11380..11382 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1210_length_12620_cov_4.526778:9317..11382-
coding sequence from alignment at NODE_1210_length_12620_cov_4.526778:9317..11382-

mRNA sequence

>Gcaud10239.t1 ID=Gcaud10239.t1|Name=Gcaud10239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=655bp
MDKLKSTLRLLVPTVHRAEDGREQWPSRLSFILASMGLAVGIGNLLRYPS
IAYNNLGVQWFIPYVMALLFVGIPLLLLEISIGQAYRGGGVVAFNRISYR
LRGLGLSVVYVGYTIATYYVVILAWAMVFFRHSFSSPLPWTGGANQLEDF
FFNRVIRNVVSTDANGQNIYEGTGVIGETIGWTMLIWLLVYLSIFKGVSL
TGRIVYFSMLFPLAMLLVITIRAVTLENAGRGIRLYIATWNGSKLGDGQI
WKDAVGQIFFSIGTGFGSFIAYASYNSKYANAVQDSLIIAFSNSFYEVVA
GFAAFGVIGFLDLPTDRTLSTFTLAFLTYPQALAQLPGSNAWSVIFFLTI
VILGIDSAFGLLEGMVTVLADTDWGNRVPRWVLVFIVTLSATLLSIMYTT
QFGLYSLDAVDKWFNELALILSMWVQCAGVTSLYRYKDVVSQTGLVAIAV
ANGSYLLAMLLLVVLGHVVSAGVGVIVFVVVLVGGTLASVILSKDPEIPS
PWGKSKYADRLWWLSCYSGEQLRRDLNVIVGRGRNWKIPALWAPMLRWLT
APVLLVILSFSYQDFIVGEPPRSQDPLHIYGFVIAHLVALFLIAGIVAPR
ILDVFISNEKKEDHLLQYETGPGEVLGDSKSLPLDADEKVASKPDEKHVD
AVTT*

spliced messenger RNA

>Gcaud10239.t1 ID=Gcaud10239.t1|Name=Gcaud10239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at NODE_1210_length_12620_cov_4.526778:9317..11382- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAAGCTCAAGAGCACTCTTCGCTTACTTGTGCCCACTGTGCATCG
TGCGGAAGATGGACGTGAACAATGGCCTTCCCGCTTGTCTTTTATTCTGG
CCTCCATGGGGCTTGCGGTGGGTATTGGCAATCTTCTCCGATACCCATCT
ATTGCATATAATAATCTAGGCGTGCAGTGGTTTATTCCATATGTTATGGC
TTTGCTGTTTGTTGGTATTCCACTCCTACTGCTTGAAATATCAATCGGAC
AAGCATATCGCGGAGGAGGTGTGGTTGCATTTAACCGCATCTCCTATCGC
CTTCGCGGTCTCGGTCTCTCCGTGGTGTACGTTGGTTACACCATTGCCAC
CTATTATGTAGTCATTCTTGCTTGGGCTATGGTGTTTTTCAGACATAGTT
TCAGCTCTCCGTTACCATGGACCGGTGGCGCCAACCAACTGGAAGACTTT
TTCTTCAACAGAGTCATACGAAATGTGGTATCCACAGATGCCAATGGACA
AAATATATATGAAGGCACCGGAGTTATAGGAGAAACAATTGGTTGGACAA
TGCTAATATGGCTCCTCGTCTACCTCAGCATCTTCAAAGGTGTTAGTCTG
ACAGGGAGGATTGTGTACTTTTCTATGCTGTTCCCTCTTGCCATGTTACT
CGTAATCACAATACGTGCCGTCACACTCGAAAACGCTGGTCGCGGCATTC
GTCTGTATATTGCCACATGGAATGGATCTAAGCTTGGAGATGGTCAGATT
TGGAAGGACGCTGTAGGGCAGATATTCTTCAGTATTGGAACTGGTTTTGG
TTCTTTCATTGCATATGCAAGTTATAACAGCAAGTATGCCAACGCCGTAC
AGGATTCGCTTATAATCGCGTTCTCCAACTCATTTTACGAAGTAGTCGCT
GGTTTCGCTGCTTTCGGCGTTATCGGGTTTCTTGATCTCCCGACGGATAG
GACACTTAGCACGTTCACCCTTGCCTTTTTAACATATCCACAAGCTTTGG
CACAGTTGCCGGGTAGTAATGCATGGTCTGTAATTTTCTTTCTTACGATC
GTCATTCTTGGTATCGATTCTGCCTTTGGCTTGCTTGAGGGCATGGTTAC
AGTGCTCGCCGATACTGACTGGGGGAATCGAGTTCCAAGATGGGTGCTAG
TTTTCATTGTGACGCTCTCTGCGACCCTCTTAAGCATCATGTACACTACC
CAGTTTGGATTATATTCACTCGATGCGGTTGACAAATGGTTCAACGAACT
GGCTTTAATTCTTTCTATGTGGGTTCAGTGTGCGGGAGTAACTTCTCTAT
ATCGTTACAAAGATGTCGTTTCTCAAACCGGACTCGTGGCGATCGCAGTG
GCAAATGGCTCGTATTTACTTGCCATGCTTTTGCTTGTGGTTCTTGGGCA
CGTGGTTAGTGCAGGGGTTGGCGTAATTGTTTTCGTCGTGGTGTTAGTTG
GTGGGACTTTGGCCAGCGTGATCTTGTCCAAAGATCCCGAGATTCCGAGC
CCTTGGGGTAAGTCAAAATATGCGGATAGATTGTGGTGGCTGTCGTGTTA
TTCAGGGGAACAACTTCGAAGAGACCTTAACGTTATCGTTGGTAGAGGCA
GGAATTGGAAGATTCCCGCTTTGTGGGCACCAATGCTGCGTTGGCTCACT
GCGCCAGTGCTGCTTGTAATATTGTCATTTTCGTACCAGGATTTCATTGT
CGGAGAGCCCCCTCGCAGTCAAGACCCCCTTCATATTTACGGGTTCGTTA
TTGCTCATTTAGTGGCACTGTTTCTTATTGCGGGTATCGTTGCTCCGAGG
ATTCTCGACGTATTCATTTCTAATGAGAAGAAGGAGGACCACTTGCTGCA
GTACGAAACAGGACCTGGGGAAGTCCTCGGCGACAGTAAGTCTTTGCCAC
TAGATGCTGACGAGAAAGTGGCGAGCAAACCTGATGAAAAACATGTTGAT
GCAGTTACAACCTAG

protein sequence of Gcaud10239.t1

>Gcaud10239.t1 ID=Gcaud10239.t1|Name=Gcaud10239.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=655bp
MDKLKSTLRLLVPTVHRAEDGREQWPSRLSFILASMGLAVGIGNLLRYPS
IAYNNLGVQWFIPYVMALLFVGIPLLLLEISIGQAYRGGGVVAFNRISYR
LRGLGLSVVYVGYTIATYYVVILAWAMVFFRHSFSSPLPWTGGANQLEDF
FFNRVIRNVVSTDANGQNIYEGTGVIGETIGWTMLIWLLVYLSIFKGVSL
TGRIVYFSMLFPLAMLLVITIRAVTLENAGRGIRLYIATWNGSKLGDGQI
WKDAVGQIFFSIGTGFGSFIAYASYNSKYANAVQDSLIIAFSNSFYEVVA
GFAAFGVIGFLDLPTDRTLSTFTLAFLTYPQALAQLPGSNAWSVIFFLTI
VILGIDSAFGLLEGMVTVLADTDWGNRVPRWVLVFIVTLSATLLSIMYTT
QFGLYSLDAVDKWFNELALILSMWVQCAGVTSLYRYKDVVSQTGLVAIAV
ANGSYLLAMLLLVVLGHVVSAGVGVIVFVVVLVGGTLASVILSKDPEIPS
PWGKSKYADRLWWLSCYSGEQLRRDLNVIVGRGRNWKIPALWAPMLRWLT
APVLLVILSFSYQDFIVGEPPRSQDPLHIYGFVIAHLVALFLIAGIVAPR
ILDVFISNEKKEDHLLQYETGPGEVLGDSKSLPLDADEKVASKPDEKHVD
AVTT*

mRNA from alignment at NODE_1210_length_12620_cov_4.526778:9317..11382-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10239.t1 ID=Gcaud10239.t1|Name=Gcaud10239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2066bp|location=Sequence derived from alignment at NODE_1210_length_12620_cov_4.526778:9317..11382- (Gracilaria caudata M_176_S67 male)
ATGGATAAGCTCAAGAGCACTCTTCGCTTACTTGTGCCCACTGTGCATCG
TGCGGAAGATGGACGTGAACAATGGCCTTCCCGCTTGTCTTTTATTCTGG
CCTCCATGGGGCTTGCGGTGGGTATTGGCAATCTTCTCCGATACCCATCT
ATTGCATATAATAATCTAGGCGTGCAGTGGTTTATTCCATATGTTATGGC
TTTGCTGTTTGTTGGTATTCCACTCCTACTGCTTGAAATATCAATCGGAC
AAGCATATCGCGGAGGAGGTGTGGTTGCATTTAACCGCATCTCCTATCGC
CTTCGCGGTCTCGGTCTCTCCGTGGTGTACGTTGGTTACACCATTGCCAC
CTATTATGTAGTCATTCTTGCTTGGGCTATGGTGTTTTTCAGACATAGTT
TCAGCTCTCCGTTACCATGGACCGGTGGCGCCAACCAACTGGAAGACTTT
TTCTTCAACAGAGTCATACGAAATGTGGTATCCACAGATGCCAATGGACA
AAATATATATGAAGGCACCGGAGTTATAGGAGAAACAATTGGTTGGACAA
TGCTAATATGGCTCCTCGTCTACCTCAGCATCTTCAAAGGTGTTAGTCTG
ACAGGGAGGATTGTGTACTTTTCTATGCTGTTCCCTCTTGCCATGTTACT
CGTAATCACAATACGTGCCGTCACACTCGAAAACGCTGGTCGCGGCATTC
GTCTGTATATTGCCACATGGAATGGATCTAAGCTTGGAGATGGTCAGATT
TGGAAGGACGCTGTAGGGCAGATATTCTTCAGTATTGGAACTGGTTTTGG
TTCTTTCATTGCATATGCAAGTTATAACAGCAAGTATGCCAACGCCGTAC
AGGATTCGCTTATAATCGCGTTCTCCAACTCATTTTACGAAGTAGTCGCT
GGTTTCGCTGCTTTCGGCGTTATCGGGTTTCTTGATCTCCCGACGGATAG
GACACTTAGCACGTTCACCCTTGCCTTTTTAACATATCCACAAGCTTTGG
CACAGTTGCCGGGTAGTAATGCATGGTCTGTAATTTTCTTTCTTACGATC
GTCATTCTTGGTATCGATTCTGCCTTTGGCTTGCTTGAGGGCATGGTTAC
AGTGCTCGCCGATACTGACTGGGGGAATCGAGTTCCAAGATGGGTGCTAG
TTTTCATTGTGACGCTCTCTGCGACCCTCTTAAGCATCATGTACACTACC
CAGTTTGGATTATATTCACTCGATGCGGTTGACAAATGGTTCAACGAACT
GGCTTTAATTCTTTCTATGTGGGTTCAGTGTGCGGGAGTAACTTCTCTAT
ATCGTTACAAAGATGTCGTTTCTCAAACCGGACTCGTGGCGATCGCAGTG
GCAAATGGCTCGTATTTACTTGCCATGCTTTTGCTTGTGGTTCTTGGGCA
CGTGGTTAGTGCAGGGGTTGGCGTAATTGTTTTCGTCGTGGTGTTAGTTG
GTGGGACTTTGGCCAGCGTGATCTTGTCCAAAGATCCCGAGATTCCGAGC
CCTTGGGGTAAGTCAAAATATGCGGATAGATTGTGGTGGCTGTCGTGTTA
TTCAGTAAGTTTGTCTCTCAAGTTGCTTCACACCAATGCTGCTTCGACTA
GAATGCTAACTACGGAGAGCGAAACTTCTTCCTTGCACCTCTTTATCGCG
TACAGGGGGAACAACTTCGAAGAGACCTTAACGTTATCGTTGGTAGAGGC
AGGAATTGGAAGATTCCCGCTTTGTGGGCACCAATGCTGCGTTGGCTCAC
TGCGCCAGTGCTGCTTGTAATATTGTCATTTTCGTACCAGGATTTCATTG
TCGGAGAGCCCCCTCGCAGTCAAGACCCCCTTCATATTTACGGGTTCGTT
ATTGCTCATTTAGTGGCACTGTTTCTTATTGCGGGTATCGTTGCTCCGAG
GATTCTCGACGTATTCATTTCTAATGAGAAGAAGGAGGACCACTTGCTGC
AGTACGAAACAGGACCTGGGGAAGTCCTCGGCGACAGTAAGTCTTTGCCA
CTAGATGCTGACGAGAAAGTGGCGAGCAAACCTGATGAAAAACATGTTGA
TGCAGTTACAACCTAG

Coding sequence (CDS) from alignment at NODE_1210_length_12620_cov_4.526778:9317..11382-

>Gcaud10239.t1 ID=Gcaud10239.t1|Name=Gcaud10239.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1965bp|location=Sequence derived from alignment at NODE_1210_length_12620_cov_4.526778:9317..11382- (Gracilaria caudata M_176_S67 male)
ATGGATAAGCTCAAGAGCACTCTTCGCTTACTTGTGCCCACTGTGCATCG
TGCGGAAGATGGACGTGAACAATGGCCTTCCCGCTTGTCTTTTATTCTGG
CCTCCATGGGGCTTGCGGTGGGTATTGGCAATCTTCTCCGATACCCATCT
ATTGCATATAATAATCTAGGCGTGCAGTGGTTTATTCCATATGTTATGGC
TTTGCTGTTTGTTGGTATTCCACTCCTACTGCTTGAAATATCAATCGGAC
AAGCATATCGCGGAGGAGGTGTGGTTGCATTTAACCGCATCTCCTATCGC
CTTCGCGGTCTCGGTCTCTCCGTGGTGTACGTTGGTTACACCATTGCCAC
CTATTATGTAGTCATTCTTGCTTGGGCTATGGTGTTTTTCAGACATAGTT
TCAGCTCTCCGTTACCATGGACCGGTGGCGCCAACCAACTGGAAGACTTT
TTCTTCAACAGAGTCATACGAAATGTGGTATCCACAGATGCCAATGGACA
AAATATATATGAAGGCACCGGAGTTATAGGAGAAACAATTGGTTGGACAA
TGCTAATATGGCTCCTCGTCTACCTCAGCATCTTCAAAGGTGTTAGTCTG
ACAGGGAGGATTGTGTACTTTTCTATGCTGTTCCCTCTTGCCATGTTACT
CGTAATCACAATACGTGCCGTCACACTCGAAAACGCTGGTCGCGGCATTC
GTCTGTATATTGCCACATGGAATGGATCTAAGCTTGGAGATGGTCAGATT
TGGAAGGACGCTGTAGGGCAGATATTCTTCAGTATTGGAACTGGTTTTGG
TTCTTTCATTGCATATGCAAGTTATAACAGCAAGTATGCCAACGCCGTAC
AGGATTCGCTTATAATCGCGTTCTCCAACTCATTTTACGAAGTAGTCGCT
GGTTTCGCTGCTTTCGGCGTTATCGGGTTTCTTGATCTCCCGACGGATAG
GACACTTAGCACGTTCACCCTTGCCTTTTTAACATATCCACAAGCTTTGG
CACAGTTGCCGGGTAGTAATGCATGGTCTGTAATTTTCTTTCTTACGATC
GTCATTCTTGGTATCGATTCTGCCTTTGGCTTGCTTGAGGGCATGGTTAC
AGTGCTCGCCGATACTGACTGGGGGAATCGAGTTCCAAGATGGGTGCTAG
TTTTCATTGTGACGCTCTCTGCGACCCTCTTAAGCATCATGTACACTACC
CAGTTTGGATTATATTCACTCGATGCGGTTGACAAATGGTTCAACGAACT
GGCTTTAATTCTTTCTATGTGGGTTCAGTGTGCGGGAGTAACTTCTCTAT
ATCGTTACAAAGATGTCGTTTCTCAAACCGGACTCGTGGCGATCGCAGTG
GCAAATGGCTCGTATTTACTTGCCATGCTTTTGCTTGTGGTTCTTGGGCA
CGTGGTTAGTGCAGGGGTTGGCGTAATTGTTTTCGTCGTGGTGTTAGTTG
GTGGGACTTTGGCCAGCGTGATCTTGTCCAAAGATCCCGAGATTCCGAGC
CCTTGGGGTAAGTCAAAATATGCGGATAGATTGTGGTGGCTGTCGTGTTA
TTCAGGGGAACAACTTCGAAGAGACCTTAACGTTATCGTTGGTAGAGGCA
GGAATTGGAAGATTCCCGCTTTGTGGGCACCAATGCTGCGTTGGCTCACT
GCGCCAGTGCTGCTTGTAATATTGTCATTTTCGTACCAGGATTTCATTGT
CGGAGAGCCCCCTCGCAGTCAAGACCCCCTTCATATTTACGGGTTCGTTA
TTGCTCATTTAGTGGCACTGTTTCTTATTGCGGGTATCGTTGCTCCGAGG
ATTCTCGACGTATTCATTTCTAATGAGAAGAAGGAGGACCACTTGCTGCA
GTACGAAACAGGACCTGGGGAAGTCCTCGGCGACAGTAAGTCTTTGCCAC
TAGATGCTGACGAGAAAGTGGCGAGCAAACCTGATGAAAAACATGTTGAT
GCAGTTACAACCTAG